Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0024546

Physical Location & Seq

Genomic Coordinates Reverse (-)

2307494 .. 2310452

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G048300.2_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTGCTAACCCAGAGCTTCTTCCTGCCTGTCTGTTTTAAACCAGAGTTATTTATTTCACAGATTGAGTATAGTGAACGCTTCAGAAAAAGAATGTTGTGGTGTTCACATTGCGGAGTTCTTGTTCCTCCAATGAGAGATGATCTTCAGTTTGTATCATGCAGTGGTTGTGGAAAAGTGCTTATCTATCGAGATGCCAGTACTAGTGAACCTACTTTGGTCAAAAGCTCCGGAAGAAAGGGCAGGAGGGCAGGTTCTTCTTTAACATCGGTTTCAAGTGACAATTCACAGTCGTTTGAAGGTCCTTTAAACGAGGGACTCTGGTCAAAACGTGCTGTCGGTGCCAATCCTGCTATGCTGCTCAAGATCAAGAAACAAGCTCCTAGTTCAAGGAAAAAGTCCAAGGCAATAATTATTCATGCTGGTGATGCCAAAGGACAAAACCCTTTCAGCATAGAGCATGAATCAGACATCTCTGAAAATGACTTCAAATTGAGGCAGGATTATGAAAATGTTAAAGAGGAAGGTGATGGAAGGCCAGCAAATTATAAATCCCACGTTCTGAATCAAGAAAATGTTCATGAATCTACCTATGATGCTGATGATGATGCTGATTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

208

Amino Acids

23.19

Weight (kDa)

6.53

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024546)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G048300_v2.0.a1 Prupe.4G048300_v2.0.a1 Prupe.4G048300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	341
AccIII	TCCGGA	1 cut(s)	230
AciI	CCGC	1 cut(s)	114
AcuI	CTGAAG	2 cut(s)	67, 131
AfaI	GTAC	1 cut(s)	202
AgsI	TTSAA	4 cut(s)	276, 299, 390, 490
AhlI	ACTAGT	1 cut(s)	203
AloI	GAACNNNNNNTCC	4 cut(s)	108, 140, 238, 270
AluBI	AGCT	3 cut(s)	18, 228, 380
AluI	AGCT	3 cut(s)	18, 228, 380
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	4, 358
Asp700I	GAANNNNTTC	1 cut(s)	576
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	437, 539
AvaII	GGWCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	524
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	2 cut(s)	204, 384
BfuAI	ACCTGC	1 cut(s)	242
BisI	GCNGC	2 cut(s)	5, 359
BlsI	GCNGC	2 cut(s)	6, 360
BmcAI	AGTACT	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	343
BmsI	GCATC	4 cut(s)	184, 418, 586, 598
BoxI	GACNNNNGTC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 238, 268
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	538
BshNI	GGYRCC	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	538
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	142, 366
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	538
BspEI	TCCGGA	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	2 cut(s)	142, 366
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	540
BstKTI	GATC	2 cut(s)	145, 369
BstMBI	GATC	2 cut(s)	142, 366
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 350, 428
BstPAI	GACNNNNGTC	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	169
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	540
CciI	TCATGA	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	4 cut(s)	159, 419, 461, 581
CviJI	RGCY	4 cut(s)	18, 228, 380, 538
CviKI_1	RGCY	4 cut(s)	18, 228, 380, 538
CviQI	GTAC	1 cut(s)	201
DpnI	GATC	2 cut(s)	144, 368
DpnII	GATC	2 cut(s)	142, 366
DraI	TTTAAA	2 cut(s)	40, 309
Eco130I	CCWWGG	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	67, 131
EcoO109I	RGGNCCY	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	4 cut(s)	162, 422, 464, 584
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	158, 418, 460, 580
Fnu4HI	GCNGC	2 cut(s)	5, 359
Fsp4HI	GCNGC	2 cut(s)	5, 359
FspBI	CTAG	2 cut(s)	204, 384
GluI	GCNGC	2 cut(s)	5, 359
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	4 cut(s)	162, 422, 464, 584
HinfI	GANTC	4 cut(s)	318, 464, 565, 584
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	437, 539
Hpy166II	GTNNAC	3 cut(s)	77, 107, 209
Hpy188I	TCNGA	4 cut(s)	86, 469, 478, 564
Hpy188III	TCNNGA	6 cut(s)	191, 231, 364, 370, 569, 581
Hpy8I	GTNNAC	3 cut(s)	77, 107, 209
HpyAV	CCTTC	3 cut(s)	293, 518, 528
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	2 cut(s)	331, 558
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 350, 428
HpySE526I	ACGT	2 cut(s)	331, 558
Hsp92II	CATG	4 cut(s)	162, 422, 464, 584
Kpn2I	TCCGGA	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	142, 366
LmnI	GCTCC	2 cut(s)	233, 385
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	4 cut(s)	184, 418, 586, 598
MaeI	CTAG	2 cut(s)	204, 384
MaeII	ACGT	2 cut(s)	331, 558
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	144, 368
MboI	GATC	2 cut(s)	142, 366
MboII	GAAGA	4 cut(s)	13, 137, 246, 249
MluCI	AATT	4 cut(s)	283, 411, 491, 544
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	5 cut(s)	138, 240, 307, 489, 514
MroI	TCCGGA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	4 cut(s)	39, 263, 308, 516
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	341, 350, 428
NdeII	GATC	2 cut(s)	142, 366
NlaIII	CATG	4 cut(s)	162, 422, 464, 584
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	464, 565, 584
PkrI	GCNGC	2 cut(s)	6, 360
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	302
PshAI	GACNNNNGTC	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	4 cut(s)	39, 263, 308, 516
SatI	GCNGC	2 cut(s)	5, 359
Sau3AI	GATC	2 cut(s)	142, 366
Sau96I	GGNCC	1 cut(s)	302
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	312
SfaNI	GCATC	4 cut(s)	184, 418, 586, 598
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	4 cut(s)	283, 411, 491, 544
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	204, 384
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	2 cut(s)	334, 561
TaqI	TCGA	1 cut(s)	190
TasI	AATT	4 cut(s)	283, 411, 491, 544
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	464, 565, 584
Tru1I	TTAA	4 cut(s)	39, 263, 308, 516
Tru9I	TTAA	4 cut(s)	39, 263, 308, 516
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	4, 358
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	5 cut(s)	407, 477, 522, 569, 597
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	2 cut(s)	204, 384
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.