Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2382615 .. 2384822

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G049900.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGTTCGATTGCAAAGAAGGGGTTGCAGCAGTACTTGCTTCAGCATCAGCATCATCGTCTCAGAACTAAGGTCAAATCCCATGTCTCTGTTAATCTCACTTGGGTTGTTTGTGGGGTTTTGTCAGCGATCAGGGACATAGTGTCTCGGAAGCTCACCGGGATTCAGAAACGTCAGTTAAGACGTCTGCTTCTCGAAGTGCTTTTTGGAGCTGTTTATCATGGACCATTTGGGCACTTCCTGCATTTATTACTTGATAAGATTTTCAAGGGGAAGAAGGATTCAAAAACAGTAGCCAAGAAGTTCTGGCCTGTTCTGGGTTGGATAAATCACCAGTATGTGCCACTCCATCTCCGTGTTGTCTTCCACAGCTTGGTCGCTTTTGGCTGGGGAATTTTCCTAAACTTACAAGCAATATATGTGGCATTACCAAGGGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

148

Amino Acids

16.93

Weight (kDa)

10.97

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	317, 373
AgsI	TTSAA	2 cut(s)	268, 285
AhdI	GACNNNNNGTC	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	3 cut(s)	154, 212, 372
AluI	AGCT	3 cut(s)	154, 212, 372
Alw26I	GTCTC	3 cut(s)	65, 91, 150
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	393
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	148, 323
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	65, 91, 150
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	224
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	55, 61
BpiI	GAAGAC	1 cut(s)	355
BpuMI	CCSGG	1 cut(s)	160
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 373
Bse1I	ACTGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	431
BseLI	CCNNNNNNNGG	2 cut(s)	317, 373
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	334
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	387
BshFI	GGCC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	317, 373
BsmAI	GTCTC	3 cut(s)	65, 91, 150
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	1 cut(s)	129
BssNI	GRCGYC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	184
BstAPI	GCANNNNNTGC	2 cut(s)	37, 241
BstDEI	CTNAG	3 cut(s)	62, 69, 438
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	3 cut(s)	65, 91, 150
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 241
BstSCI	CCNGG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	2 cut(s)	83, 221
CviJI	RGCY	7 cut(s)	154, 212, 296, 310, 372, 387, 437
CviKI_1	RGCY	7 cut(s)	154, 212, 296, 310, 372, 387, 437
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	62, 69, 438
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
DriI	GACNNNNNGTC	1 cut(s)	142
Eam1105I	GACNNNNNGTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	86, 224
FaiI	YATR	6 cut(s)	84, 140, 222, 339, 418, 420
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	82, 220
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	86, 224
HinfI	GANTC	2 cut(s)	163, 281
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	148, 323
Hpy188I	TCNGA	3 cut(s)	65, 150, 168
Hpy188III	TCNNGA	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	13, 271
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	172, 184
HpyCH4V	TGCA	3 cut(s)	14, 28, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 241
HpyF3I	CTNAG	3 cut(s)	62, 69, 438
HpySE526I	ACGT	2 cut(s)	172, 184
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	86, 224
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	8 cut(s)	118, 172, 254, 292, 302, 324, 347, 373
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	55, 61
MaeII	ACGT	2 cut(s)	172, 184
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	2 cut(s)	286, 355
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	302
MseI	TTAA	2 cut(s)	93, 179
MslI	CAYNNNNRTG	2 cut(s)	336, 354
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	37, 241
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	2 cut(s)	86, 224
PfeI	GAWTC	2 cut(s)	163, 281
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	336, 354
SaqAI	TTAA	2 cut(s)	93, 179
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	224
ScaI	AGTACT	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	6 cut(s)	75, 156, 175, 187, 214, 374
SfaNI	GCATC	2 cut(s)	55, 61
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	2 cut(s)	336, 354
Sse9I	AATT	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	2 cut(s)	175, 187
TaqI	TCGA	2 cut(s)	8, 195
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	163, 281
Tru1I	TTAA	2 cut(s)	93, 179
Tru9I	TTAA	2 cut(s)	93, 179
TseI	GCWGC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	393
ZraI	GACGTC	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.