Prupe.4G050000_v2.0.a1

cellular response to nitrogen starvation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
2386633 .. 2388451
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G050000.1_v2.0.a1.CDS.6

Sequence Viewer

Length: 570 bp
ATGGCAGAAGAATGCTCTTCCAGGAATGATTGTTCTCAGGAAAGTAGGCAAGCTGAAGAGAAGAAGCCGGTCAAAGTGGAGAATGCTGCAGGGACAGGGAGTGAATTTGATGGCACTGACAGCGACGAGAAGAAAAATGTTCCGTTAGCAAAAAAAAGCAGAAAACGAAAGTATTGCATATGGGCCATTGCTTGCTTAGACAATTGGAATAAGAGAGGCTGGAGGAGGAACGGAAAAAAAAGTTTGGAAGGTGCCGATTTGAGGGAGAAGTATCCACTTTGTATACCTGTGAGTGTAGAGAAGGATGCAGGGAGTGACATTCCGGACATTAACATGAAGAAATTCCTTATCCCTTCTGATATGCTTCTTAGAAAATTTGTTCGGTTTTTACGGGGTTATAGCAAAAAGCCCATGTTTGTCTTTTTCAAGAACACTACTCAACCTCCCACTGGTGTCTTGATGTCTGCAATCGATGAGGAAAATAAGGATAGCGATGGATATCTTCACGTGATTTACAGTGGGAATGATCATTTGAGTGGATTGTTTGAAGAGCTCAAGTTATCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

190

Amino Acids

21.46

Weight (kDa)

8.71

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 283
AccIII TCCGGA 1 cut(s) 322
AcsI RAATTY 3 cut(s) 104, 341, 374
AcuI CTGAAG 1 cut(s) 75
AcvI CACGTG 1 cut(s) 508
AfiI CCNNNNNNNGG 2 cut(s) 261, 449
AgsI TTSAA 2 cut(s) 427, 548
AjnI CCWGG 1 cut(s) 20
AloI GAACNNNNNNTCC 2 cut(s) 16, 48
AluBI AGCT 2 cut(s) 53, 553
AluI AGCT 2 cut(s) 53, 553
Alw21I GWGCWC 1 cut(s) 555
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 3 cut(s) 104, 341, 374
Asp700I GAANNNNTTC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 555
BbrPI CACGTG 1 cut(s) 508
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 73
BccI CCATC 2 cut(s) 104, 488
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciT130I CCWGG 1 cut(s) 22
BciVI GTATCC 1 cut(s) 282
BclI TGATCA 1 cut(s) 526
BfmI CTRYAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 282
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 295
BpmI CTGGAG 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 539
Bsa29I ATCGAT 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 449
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 498
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 1 cut(s) 22
BseCI ATCGAT 1 cut(s) 471
BseGI GGATG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 2 cut(s) 261, 449
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 2 cut(s) 68, 323
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 261, 449
BsmFI GGGAC 1 cut(s) 106
BsmI GAATGC 2 cut(s) 17, 88
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 555
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 1 cut(s) 526
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 1 cut(s) 471
BspEI TCCGGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 91
BspQI GCTCTTC 2 cut(s) 22, 543
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 67
BssMI GATC 1 cut(s) 526
BssNAI GTATAC 1 cut(s) 284
Bst1107I GTATAC 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 3 cut(s) 22, 51, 543
BstBAI YACGTR 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 51, 193
BstDEI CTNAG 3 cut(s) 36, 196, 368
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 1 cut(s) 529
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 471
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 185
BsuTUI ATCGAT 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 3 cut(s) 114, 447, 523
Cac8I GCNNGC 2 cut(s) 51, 193
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 183
ClaI ATCGAT 1 cut(s) 471
CviAII CATG 2 cut(s) 334, 412
CviJI RGCY 6 cut(s) 53, 67, 185, 219, 409, 553
CviKI_1 RGCY 6 cut(s) 53, 67, 185, 219, 409, 553
DdeI CTNAG 3 cut(s) 36, 196, 368
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
Eam1104I CTCTTC 3 cut(s) 22, 51, 543
EarI CTCTTC 3 cut(s) 22, 51, 543
Ecl136II GAGCTC 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 555
Eco32I GATATC 1 cut(s) 500
Eco53kI GAGCTC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 75
Eco72I CACGTG 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 20
EcoRV GATATC 1 cut(s) 500
EcoT38I GRGCYC 1 cut(s) 555
FaeI CATG 2 cut(s) 337, 415
FaiI YATR 8 cut(s) 179, 181, 284, 335, 362, 399, 413, 568
FaqI GGGAC 1 cut(s) 106
FatI CATG 2 cut(s) 333, 411
FauNDI CATATG 1 cut(s) 179
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 68, 323
Hin1II CATG 2 cut(s) 337, 415
HpaII CCGG 2 cut(s) 68, 323
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 4 cut(s) 38, 323, 427, 457
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 242, 295, 363
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 4 cut(s) 89, 177, 308, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 3 cut(s) 36, 196, 368
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 2 cut(s) 337, 415
Kpn2I TCCGGA 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 1 cut(s) 526
LguI GCTCTTC 2 cut(s) 22, 543
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 295
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 314
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 9 cut(s) 9, 20, 68, 73, 142, 349, 494, 555, 560
MfeI CAATTG 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 4 cut(s) 104, 202, 341, 374
MnlI CCTC 6 cut(s) 209, 216, 219, 255, 453, 469
MroI TCCGGA 1 cut(s) 322
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 2 cut(s) 332, 534
MspI CCGG 2 cut(s) 68, 323
MspR9I CCNGG 1 cut(s) 22
MunI CAATTG 1 cut(s) 202
Mva1269I GAATGC 2 cut(s) 17, 88
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeI CATATG 1 cut(s) 179
NdeII GATC 1 cut(s) 526
NlaIII CATG 2 cut(s) 337, 415
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 314
PciSI GCTCTTC 2 cut(s) 22, 543
PctI GAATGC 2 cut(s) 17, 88
PdmI GAANNNNTTC 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 1 cut(s) 88
PmaCI CACGTG 1 cut(s) 508
PmlI CACGTG 1 cut(s) 508
Ppu21I YACGTR 1 cut(s) 508
Psp124BI GAGCTC 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 20
PspCI CACGTG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 91
RseI CAYNNNNRTG 2 cut(s) 332, 534
SacI GAGCTC 1 cut(s) 555
SapI GCTCTTC 2 cut(s) 22, 543
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 526
Sau96I GGNCC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 1 cut(s) 555
SetI ASST 6 cut(s) 55, 253, 289, 445, 510, 555
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 2 cut(s) 332, 534
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 4 cut(s) 104, 202, 341, 374
SstI GAGCTC 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 1 cut(s) 510
TaqI TCGA 1 cut(s) 471
TasI AATT 4 cut(s) 104, 202, 341, 374
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 3 cut(s) 121, 454, 523
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 350, 555
TspGWI ACGGA 2 cut(s) 132, 246
TspRI CASTG 3 cut(s) 121, 454, 523
XapI RAATTY 3 cut(s) 104, 341, 374
XmiI GTMKAC 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.