Prupe.4G058500_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
2790204 .. 2791969
1766 bp
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UTR
Exon/CDS
Intron
Prupe.4G058500.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 480 bp
ATGGGGGATTCTATTACATATACCAACAACTCCCTTGGAATTCAATTGGACTGGTTTAAAGAGATTATGCCATATTTATGCAACACATCTTCAACTGAGTCTCTTGGGCTTCCACTGGTACTGCCTTATCTTGAAAGCCTGATCAGTAATCAAACTGTCCAAAACTTTGAAGCGGGTGTGAATTTTGCCGTAATAGGAGCCATGGCGCTCGATGCTTCCTTTCTTGCAACAATGGGAGTTCATAATGCAAGTACCAACAACTTTCTAAGAATTCAACTGGAGTGGTTCAAACAAATGCTGCCATCTTTGTGCAAAACATCTTCAGGCGACTTTCCAATTGGTTGCCTTCCTGCTTATCTAACAAAATATGGGAGTTCAGATAAGAACCAATATGACCCTAAAACTGGCTGCCTAAAATGGTTAAACGAGTTTTCTCAGTACCACAATGAGCAGCTTCAGATAGAACTAAGTCGGATTTGA

Protein Analysis

160

Amino Acids

17.81

Weight (kDa)

4.85

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 173
AcsI RAATTY 3 cut(s) 39, 181, 270
AcuI CTGAAG 2 cut(s) 306, 440
AfaI GTAC 3 cut(s) 120, 253, 440
AfiI CCNNNNNNNGG 1 cut(s) 404
AgsI TTSAA 6 cut(s) 44, 93, 134, 170, 275, 289
AluBI AGCT 1 cut(s) 454
AluI AGCT 1 cut(s) 454
Alw26I GTCTC 1 cut(s) 105
ApeKI GCWGC 3 cut(s) 298, 408, 451
ApoI RAATTY 3 cut(s) 39, 181, 270
AspLEI GCGC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 285, 395, 463
BccI CCATC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 173
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 209
BisI GCNGC 3 cut(s) 299, 409, 452
BlsI GCNGC 3 cut(s) 300, 410, 453
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 34, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse1I ACTGG 4 cut(s) 56, 120, 282, 409
BseDI CCNNGG 2 cut(s) 34, 201
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMII CTCAG 2 cut(s) 87, 449
BseNI ACTGG 4 cut(s) 56, 120, 282, 409
BseXI GCAGC 3 cut(s) 285, 395, 463
BslI CCNNNNNNNGG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 141
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 88, 448
BspLI GGNNCC 1 cut(s) 199
BsrI ACTGG 4 cut(s) 56, 120, 282, 409
BssECI CCNNGG 2 cut(s) 34, 201
BssMI GATC 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 34, 201
Bst4CI ACNGT 1 cut(s) 157
BstDEI CTNAG 4 cut(s) 96, 266, 435, 467
BstDSI CCRYGG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstV1I GCAGC 3 cut(s) 285, 395, 463
BtgI CCRYGG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 113
CfoI GCGC 1 cut(s) 208
Csp6I GTAC 3 cut(s) 119, 252, 439
CspCI CAANNNNNGTGG 2 cut(s) 263, 298
CviAII CATG 1 cut(s) 202
CviJI RGCY 5 cut(s) 109, 138, 200, 408, 454
CviKI_1 RGCY 5 cut(s) 109, 138, 200, 408, 454
CviQI GTAC 3 cut(s) 119, 252, 439
DdeI CTNAG 4 cut(s) 96, 266, 435, 467
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
DraI TTTAAA 1 cut(s) 58
Eco130I CCWWGG 2 cut(s) 34, 201
Eco57I CTGAAG 2 cut(s) 306, 440
EcoRI GAATTC 2 cut(s) 39, 270
EcoT14I CCWWGG 2 cut(s) 34, 201
ErhI CCWWGG 2 cut(s) 34, 201
FaeI CATG 1 cut(s) 205
FaiI YATR 9 cut(s) 19, 21, 68, 73, 79, 203, 243, 369, 393
FatI CATG 1 cut(s) 201
FauI CCCGC 1 cut(s) 166
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 299, 409, 452
Fsp4HI GCNGC 3 cut(s) 299, 409, 452
GlaI GCGC 1 cut(s) 207
GluI GCNGC 3 cut(s) 299, 409, 452
GsuI CTGGAG 1 cut(s) 299
HaeII RGCGCY 1 cut(s) 209
HhaI GCGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 2 cut(s) 8, 98
Hpy188I TCNGA 3 cut(s) 379, 459, 474
Hpy188III TCNNGA 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 81, 227, 248, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 4 cut(s) 96, 266, 435, 467
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 7 cut(s) 37, 101, 152, 263, 309, 363, 390
Lsp1109I GCAGC 3 cut(s) 285, 395, 463
LweI GCATC 1 cut(s) 202
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 2 cut(s) 81, 312
MfeI CAATTG 2 cut(s) 44, 336
MluCI AATT 5 cut(s) 39, 44, 181, 270, 336
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 452
MseI TTAA 2 cut(s) 57, 422
MslI CAYNNNNRTG 2 cut(s) 76, 307
MunI CAATTG 2 cut(s) 44, 336
MwoI GCNNNNNNNGC 1 cut(s) 212
NcoI CCATGG 1 cut(s) 201
NdeII GATC 1 cut(s) 141
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 300, 410, 453
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 3 cut(s) 120, 253, 440
RsaNI GTAC 3 cut(s) 119, 252, 439
RseI CAYNNNNRTG 2 cut(s) 76, 307
SaqAI TTAA 2 cut(s) 57, 422
SatI GCNGC 3 cut(s) 299, 409, 452
Sau3AI GATC 1 cut(s) 141
SchI GAGTC 1 cut(s) 107
SetI ASST 1 cut(s) 456
SfaNI GCATC 1 cut(s) 202
SmiMI CAYNNNNRTG 2 cut(s) 76, 307
Sse9I AATT 5 cut(s) 39, 44, 181, 270, 336
SsiI CCGC 1 cut(s) 173
StyI CCWWGG 2 cut(s) 34, 201
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 210
TasI AATT 5 cut(s) 39, 44, 181, 270, 336
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 57, 422
Tru9I TTAA 2 cut(s) 57, 422
TscAI CASTG 1 cut(s) 120
TseI GCWGC 3 cut(s) 298, 408, 451
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 1 cut(s) 120
XapI RAATTY 3 cut(s) 39, 181, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.