Prupe.4G059700_v2.0.a1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
2848562 .. 2849631
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G059700.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 834 bp
ATGGCTTTTACACTTGAATGGAAACTCATGATTTCCATGTTCATAGTGGTTTCGGGGACTTGGGAATCAAAAGCCGCATCCACCACGTTGCATGAAGGTTCAATGGCGATAAAACATGAGCTATGGATGGCTAAGTATGCACGCATTTACGTAGACAATGCAGAAAAGGAAAGGCGTTTCAAGATATTCAAGGAAAATGTGGAGTTCATCGAAAAGTTTAACACCGAAGCTAATCACATTTACAAGTCAGGCCTCAACGAATTCTCAGACCTCACAGATGAAGAATTCACCATGTTTCATGCTGGATACAAACCCACACGCTTATTCAAAAATAGTTCTTTCCACATTGACTGGAGGAACAAAGGAGCTGTCACCCCCGTAAAATTCCAAGGTGTATGTGGAAGTTGCTGGGCATTTACAGCAGTGGCAGATGTGGAGGGAATTACACAAACAAAAACGGGTAGCTTGATCTCACTGTCAGAGCAACAACTAGTGGACTGTTCCAAAAATGGCGTTAACCAAGGAAAGAATGAAACGTGTGACATTGAAAAGAAAAAGAACATCGCTGCCCGTTTCGCTAGCTACGAATCTGTGCCATCAAACAGCGAGGAGGCATTGCAGAAGGCTGTTTCGATGCAACCAGTCACAGCTAGTGTTGAAGGCCGAGGAATGGCATTCCGACATTACTCCAGTGGAGTCTTTTCTGGAGTCGTTGGCTTCCGCGAAAATGAATACGGCATTGAGTATTGGTTGGTGAAGAATTCATGGGGACGGAACTGGGGTGGCTACATTGAGGATTTGCAAAAATGTTGGTTTTCCAGAAGGTCTTTGTAG

Protein Analysis

278

Amino Acids

31.56

Weight (kDa)

7.63

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 723
AciI CCGC 2 cut(s) 75, 721
AcsI RAATTY 4 cut(s) 260, 284, 383, 760
AfiI CCNNNNNNNGG 1 cut(s) 670
AflIII ACRYGT 1 cut(s) 536
AgsI TTSAA 7 cut(s) 17, 102, 181, 190, 328, 548, 659
AhlI ACTAGT 1 cut(s) 490
AluBI AGCT 6 cut(s) 121, 230, 368, 465, 582, 650
AluI AGCT 6 cut(s) 121, 230, 368, 465, 582, 650
AoxI GGCC 2 cut(s) 250, 661
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 4 cut(s) 260, 284, 383, 760
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AsuHPI GGTGA 3 cut(s) 280, 364, 766
AsuNHI GCTAGC 1 cut(s) 578
BbvI GCAGC 1 cut(s) 553
BccI CCATC 2 cut(s) 121, 604
BceAI ACGGC 1 cut(s) 751
BciVI GTATCC 1 cut(s) 299
BcuI ACTAGT 1 cut(s) 490
BfaI CTAG 3 cut(s) 491, 579, 651
BfuI GTATCC 1 cut(s) 299
BisI GCNGC 2 cut(s) 75, 567
BlsI GCNGC 2 cut(s) 76, 568
BmrI ACTGGG 1 cut(s) 787
BmsI GCATC 2 cut(s) 86, 624
BmtI GCTAGC 1 cut(s) 582
BmuI ACTGGG 1 cut(s) 787
BpmI CTGGAG 3 cut(s) 373, 673, 726
BsaAI YACGTR 1 cut(s) 151
BsaJI CCNNGG 3 cut(s) 388, 520, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse1I ACTGG 4 cut(s) 356, 641, 690, 782
Bse3DI GCAATG 1 cut(s) 614
BseDI CCNNGG 3 cut(s) 388, 520, 664
BseGI GGATG 2 cut(s) 77, 132
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 1 cut(s) 614
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 4 cut(s) 356, 641, 690, 782
BseRI GAGGAG 1 cut(s) 623
BseXI GCAGC 1 cut(s) 553
BseYI CCCAGC 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 723
BshFI GGCC 2 cut(s) 252, 663
BslFI GGGAC 2 cut(s) 70, 783
BslI CCNNNNNNNGG 1 cut(s) 670
BsmFI GGGAC 2 cut(s) 70, 783
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 2 cut(s) 252, 663
Bsp143I GATC 1 cut(s) 468
BspACI CCGC 2 cut(s) 75, 721
BspANI GGCC 2 cut(s) 252, 663
BspCNI CTCAG 1 cut(s) 278
BspFNI CGCG 1 cut(s) 723
BspHI TCATGA 1 cut(s) 27
BspOI GCTAGC 1 cut(s) 582
BsrDI GCAATG 1 cut(s) 614
BsrI ACTGG 4 cut(s) 356, 641, 690, 782
BssECI CCNNGG 3 cut(s) 388, 520, 664
BssMI GATC 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 388, 520
Bst4CI ACNGT 2 cut(s) 477, 500
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 142, 580
BstDEI CTNAG 2 cut(s) 132, 265
BstF5I GGATG 2 cut(s) 77, 132
BstFNI CGCG 1 cut(s) 723
BstKTI GATC 1 cut(s) 471
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 3 cut(s) 137, 419, 575
BstSNI TACGTA 1 cut(s) 151
BstUI CGCG 1 cut(s) 723
BstV1I GCAGC 1 cut(s) 553
BsuI GTATCC 1 cut(s) 299
BsuRI GGCC 2 cut(s) 252, 663
BtgZI GCGATG 1 cut(s) 547
BtsCI GGATG 2 cut(s) 77, 132
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 429, 473, 697
Cac8I GCNNGC 2 cut(s) 142, 580
CciI TCATGA 1 cut(s) 27
CviAII CATG 7 cut(s) 28, 37, 92, 116, 292, 299, 765
DdeI CTNAG 2 cut(s) 132, 265
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
Eco105I TACGTA 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 388, 520
Eco147I AGGCCT 1 cut(s) 252
EcoRI GAATTC 3 cut(s) 260, 284, 760
EcoT14I CCWWGG 2 cut(s) 388, 520
ErhI CCWWGG 2 cut(s) 388, 520
FaeI CATG 7 cut(s) 31, 40, 95, 119, 295, 302, 768
FaqI GGGAC 2 cut(s) 70, 783
FatI CATG 7 cut(s) 27, 36, 91, 115, 291, 298, 764
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 2 cut(s) 75, 567
FokI GGATG 2 cut(s) 64, 139
Fsp4HI GCNGC 2 cut(s) 75, 567
FspBI CTAG 3 cut(s) 491, 579, 651
GluI GCNGC 2 cut(s) 75, 567
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 3 cut(s) 373, 673, 726
HaeIII GGCC 2 cut(s) 252, 663
Hin1II CATG 7 cut(s) 31, 40, 95, 119, 295, 302, 768
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 4 cut(s) 65, 587, 696, 708
HpaI GTTAAC 1 cut(s) 517
HphI GGTGA 3 cut(s) 280, 364, 766
Hpy166II GTNNAC 3 cut(s) 154, 496, 517
Hpy188I TCNGA 3 cut(s) 268, 481, 680
Hpy188III TCNNGA 4 cut(s) 28, 181, 705, 819
Hpy8I GTNNAC 3 cut(s) 154, 496, 517
HpyAV CCTTC 4 cut(s) 89, 616, 653, 816
HpyCH4III ACNGT 2 cut(s) 477, 500
HpyCH4IV ACGT 3 cut(s) 86, 150, 536
HpyCH4V TGCA 6 cut(s) 91, 140, 161, 619, 637, 802
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 419, 575
HpyF3I CTNAG 2 cut(s) 132, 265
HpySE526I ACGT 3 cut(s) 86, 150, 536
Hsp92II CATG 7 cut(s) 31, 40, 95, 119, 295, 302, 768
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 8 cut(s) 234, 288, 337, 394, 654, 690, 703, 763
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 2 cut(s) 86, 624
MaeI CTAG 3 cut(s) 491, 579, 651
MaeII ACGT 3 cut(s) 86, 150, 536
MaeIII GTNAC 3 cut(s) 370, 539, 643
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 2 cut(s) 293, 769
MluCI AATT 5 cut(s) 260, 284, 383, 441, 760
MlyI GAGTC 2 cut(s) 705, 717
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 8 cut(s) 263, 281, 348, 430, 601, 604, 659, 787
MseI TTAA 2 cut(s) 219, 516
MslI CAYNNNNRTG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 674
MvnI CGCG 1 cut(s) 723
MwoI GCNNNNNNNGC 3 cut(s) 137, 419, 575
NdeII GATC 1 cut(s) 468
NheI GCTAGC 1 cut(s) 578
NlaIII CATG 7 cut(s) 31, 40, 95, 119, 295, 302, 768
NmeAIII GCCGAG 1 cut(s) 689
NmuCI GTSAC 3 cut(s) 370, 539, 643
PagI TCATGA 1 cut(s) 27
PceI AGGCCT 1 cut(s) 252
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PctI GAATGC 1 cut(s) 674
PfeI GAWTC 2 cut(s) 65, 587
PkrI GCNGC 2 cut(s) 76, 568
PleI GAGTC 2 cut(s) 704, 716
PpsI GAGTC 2 cut(s) 704, 716
Ppu21I YACGTR 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 16
SaqAI TTAA 2 cut(s) 219, 516
SatI GCNGC 2 cut(s) 75, 567
Sau3AI GATC 1 cut(s) 468
SchI GAGTC 2 cut(s) 705, 717
SfaNI GCATC 2 cut(s) 86, 624
SmiMI CAYNNNNRTG 1 cut(s) 16
SnaBI TACGTA 1 cut(s) 151
SpeI ACTAGT 1 cut(s) 490
Sse9I AATT 5 cut(s) 260, 284, 383, 441, 760
SseBI AGGCCT 1 cut(s) 252
SsiI CCGC 2 cut(s) 75, 721
SspMI CTAG 3 cut(s) 491, 579, 651
StuI AGGCCT 1 cut(s) 252
StyI CCWWGG 2 cut(s) 388, 520
TaaI ACNGT 2 cut(s) 477, 500
TaiI ACGT 3 cut(s) 89, 153, 539
TaqI TCGA 2 cut(s) 210, 632
TasI AATT 5 cut(s) 260, 284, 383, 441, 760
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 2 cut(s) 65, 587
Tru1I TTAA 2 cut(s) 219, 516
Tru9I TTAA 2 cut(s) 219, 516
TscAI CASTG 3 cut(s) 429, 480, 697
TseFI GTSAC 3 cut(s) 370, 539, 643
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 3 cut(s) 370, 539, 643
TspDTI ATGAA 8 cut(s) 31, 108, 196, 287, 294, 546, 744, 753
TspGWI ACGGA 1 cut(s) 787
TspRI CASTG 3 cut(s) 429, 480, 697
XapI RAATTY 4 cut(s) 260, 284, 383, 760
XcmI CCANNNNNNNNNTGG 2 cut(s) 43, 395
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 3 cut(s) 491, 579, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.