Prupe.4G066700_v2.0.a1

histone H2A-K13 ubiquitination

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
3218972 .. 3221094
2123 bp
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UTR
Exon/CDS
Intron
Prupe.4G066700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 435 bp
ATGCCTATTTCAGTCAATGGATCGAGTGTGACACTTAACGACTTTACACAAAAGAACTTCCCAGAGGAATTTGCCGAAAGGAAGTTGCAGAATGATACAATGACAAACTTTGGTGTTGATTCGATGCCACTTTTTGTAATGGATGTTGTGCTCCCATTTCACAAGTTTCCACTACGCATTTTTGAACCTCGGTATAGACTTATGGTAAGGAGGATAATGGAAGGCAACCTTCGGATGGGAATGGTTATCACTGATTCTTCAACAGGTTCAATAGCTGAATTTGCTTGTGAAGTGGAAATTACTGAGTTTGCACCACTTCCAGATGGACGTTTCCACTTAGAGGAAATAGCTTGTTTTGTCAAGCTCGAAGAGTACTGGTTAAATCCAACATCGAAGGATTTGATTGAGACTAGAAAAATTTGGAAATATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

145

Amino Acids

16.82

Weight (kDa)

5.09

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 3 cut(s) 68, 278, 417
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 235, 340
AgsI TTSAA 3 cut(s) 185, 261, 270
AluBI AGCT 3 cut(s) 275, 350, 364
AluI AGCT 3 cut(s) 275, 350, 364
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 1 cut(s) 28
ApoI RAATTY 3 cut(s) 68, 278, 417
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 2 cut(s) 229, 317
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 1 cut(s) 411
BmcAI AGTACT 1 cut(s) 374
BmsI GCATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 340
Bse1I ACTGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 148, 240
BseLI CCNNNNNNNGG 2 cut(s) 235, 340
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 235, 340
BsmAI GTCTC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 295
BspPI GGATC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 303, 337
BstF5I GGATG 2 cut(s) 148, 240
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 148, 240
BtsIMutI CAGTG 1 cut(s) 249
Csp6I GTAC 1 cut(s) 373
CviJI RGCY 3 cut(s) 275, 350, 364
CviKI_1 RGCY 3 cut(s) 275, 350, 364
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 303, 337
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
FaiI YATR 2 cut(s) 195, 203
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FokI GGATG 2 cut(s) 155, 247
FspBI CTAG 1 cut(s) 411
HinfI GANTC 2 cut(s) 119, 254
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 215, 239, 388
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 88, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 303, 337
HpySE526I ACGT 1 cut(s) 328
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 75, 249, 333, 361
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 2 cut(s) 249, 380
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 4 cut(s) 68, 278, 297, 417
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 4 cut(s) 58, 198, 204, 334
MseI TTAA 2 cut(s) 36, 380
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 28
PfeI GAWTC 2 cut(s) 119, 254
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 36, 380
Sau3AI GATC 1 cut(s) 20
ScaI AGTACT 1 cut(s) 374
SduI GDGCHC 1 cut(s) 153
SetI ASST 7 cut(s) 190, 231, 268, 277, 331, 352, 366
SfaNI GCATC 1 cut(s) 114
Sse9I AATT 4 cut(s) 68, 278, 297, 417
SspMI CTAG 1 cut(s) 411
TaiI ACGT 1 cut(s) 331
TaqI TCGA 4 cut(s) 23, 122, 366, 392
TasI AATT 4 cut(s) 68, 278, 297, 417
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 2 cut(s) 119, 254
Tru1I TTAA 2 cut(s) 36, 380
Tru9I TTAA 2 cut(s) 36, 380
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspRI CASTG 1 cut(s) 256
XapI RAATTY 3 cut(s) 68, 278, 417
XspI CTAG 1 cut(s) 411
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.