Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3472018 .. 3475458

Gene Structure 3441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G070800.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAAAAGTGCCAACAATATTGTTCATGATGGTCGTCGTTTTGGTGGATCCAATTCATGGAGCACCACAAGTTCCTTGTTTTTTCATTTTTGGTGATTCATTGGTCGATAATGGCAACAATAACAACCTCCTCACCAGAGCCAAAGTGAACTACCAGCCATACGGGATCGGGATTGATTTTCTCACTGGACCAACCGGAAGGTTTTGCAACGGCCGGACCACCGTTGACATATTAGCTCAACTTCTGGGTTTTGAGAATCTCATCCCACCATTTGCAACTAGCAATAAGGGTCCAGACATTTTAAAAGGACTGAATTATGCATCTGGCGCAACAGGAATTCGAGTCGAAACTGGCTCCCAATTGGGTGGTCATATCAGCTTAGATCAGCAATTACTTAATCACCAAGTCACAGCCATATTATACACGTACAAAAAAAAAAAGAACACAACCTCTCCCGACGAAATTTCGTCGGCACAGGTGCATAGACCTATGCCGACGAAAAAATCTATGCCGACGAAATTTCGTCGGGGGAAACCTAATCCGGCAAATTTCGTCGGCATAGACCTATGCCGACGAAATTTTGTCGCGAGAGTGAACAATATTGGTCAATGTGCTGCTGGCCAAACTCCATGCCAAAATAGGAGTGAATATGTGTTTTGGGATGGATTTCATCCTACTGAGGCCTTGAACCAGATCACTGGAATAAGAACTTACACTGCTTTTGATCCGTCCGATGCTTACCCAATGGGTATCAGCCACCTTGTTCAGCTTAGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

261

Amino Acids

28.58

Weight (kDa)

9.34

Isoelectric Point (pI)

27.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	781
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	1 cut(s)	590
AclWI	GGATC	4 cut(s)	44, 57, 176, 722
AcoI	YGGCCR	2 cut(s)	214, 622
AcsI	RAATTY	5 cut(s)	339, 465, 521, 550, 580
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	1 cut(s)	691
AluBI	AGCT	3 cut(s)	239, 381, 772
AluI	AGCT	3 cut(s)	239, 381, 772
Alw21I	GWGCWC	1 cut(s)	67
AlwI	GGATC	4 cut(s)	44, 57, 176, 722
AoxI	GGCC	3 cut(s)	214, 622, 684
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	5 cut(s)	339, 465, 521, 550, 580
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	191, 219, 293
AsuHPI	GGTGA	3 cut(s)	107, 127, 395
AvaII	GGWCC	3 cut(s)	191, 219, 293
BalI	TGGCCA	1 cut(s)	624
BamHI	GGATCC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	2 cut(s)	25, 659
BceAI	ACGGC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	1 cut(s)	618
BlsI	GCNGC	1 cut(s)	619
Bme18I	GGWCC	3 cut(s)	191, 219, 293
BmgT120I	GGNCC	3 cut(s)	191, 219, 293
BmiI	GGNNCC	3 cut(s)	51, 294, 358
BmsI	GCATC	2 cut(s)	332, 727
Bpu10I	CCTNAGC	1 cut(s)	773
BsaAI	YACGTR	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	193, 358, 706
BseGI	GGATG	3 cut(s)	264, 670, 673
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	3 cut(s)	193, 358, 706
BseRI	GAGGAG	1 cut(s)	122
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	590
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	216, 624, 686
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	198, 217, 545
BslI	CCNNNNNNNGG	1 cut(s)	59
BsnI	GGCC	3 cut(s)	216, 624, 686
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	49, 168, 385, 696, 727
Bsp68I	TCGCGA	1 cut(s)	590
BspANI	GGCC	3 cut(s)	216, 624, 686
BspCNI	CTCAG	1 cut(s)	673
BspFNI	CGCG	1 cut(s)	590
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	51, 294, 358
BspPI	GGATC	4 cut(s)	44, 57, 176, 722
BsrI	ACTGG	3 cut(s)	193, 358, 706
BssMI	GATC	5 cut(s)	49, 168, 385, 696, 727
Bst4CI	ACNGT	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	3 cut(s)	382, 681, 773
BstF5I	GGATG	3 cut(s)	264, 670, 673
BstFNI	CGCG	1 cut(s)	590
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	5 cut(s)	52, 171, 388, 699, 730
BstMBI	GATC	5 cut(s)	49, 168, 385, 696, 727
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	1 cut(s)	604
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	2 cut(s)	368, 701
BstYI	RGATCY	1 cut(s)	49
BstZI	CGGCCG	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	216, 624, 686
BtsCI	GGATG	3 cut(s)	264, 670, 673
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	3 cut(s)	186, 699, 717
BtuMI	TCGCGA	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	622
CciI	TCATGA	1 cut(s)	27
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	191, 219, 293
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	3 cut(s)	28, 59, 633
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	3 cut(s)	382, 681, 773
DpnI	GATC	5 cut(s)	51, 170, 387, 698, 729
DpnII	GATC	5 cut(s)	49, 168, 385, 696, 727
DraI	TTTAAA	1 cut(s)	306
EaeI	YGGCCR	2 cut(s)	214, 622
EagI	CGGCCG	1 cut(s)	214
EclXI	CGGCCG	1 cut(s)	214
Eco147I	AGGCCT	1 cut(s)	686
Eco47I	GGWCC	3 cut(s)	191, 219, 293
Eco52I	CGGCCG	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	339
EcoT22I	ATGCAT	1 cut(s)	325
FaeI	CATG	3 cut(s)	31, 62, 636
FatI	CATG	3 cut(s)	27, 58, 632
Fnu4HI	GCNGC	1 cut(s)	618
FokI	GGATG	3 cut(s)	251, 660, 677
Fsp4HI	GCNGC	1 cut(s)	618
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	618
HaeIII	GGCC	3 cut(s)	216, 624, 686
HapII	CCGG	3 cut(s)	198, 217, 545
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	3 cut(s)	31, 62, 636
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	98, 259, 345
HpaII	CCGG	3 cut(s)	198, 217, 545
HphI	GGTGA	3 cut(s)	107, 127, 395
Hpy166II	GTNNAC	3 cut(s)	151, 229, 598
Hpy188I	TCNGA	1 cut(s)	736
Hpy188III	TCNNGA	5 cut(s)	28, 172, 296, 458, 589
Hpy8I	GTNNAC	3 cut(s)	151, 229, 598
Hpy99I	CGWCG	8 cut(s)	41, 464, 475, 502, 520, 531, 560, 579
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	4 cut(s)	210, 278, 323, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	3 cut(s)	382, 681, 773
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	3 cut(s)	31, 62, 636
HspAI	GCGC	1 cut(s)	330
Kzo9I	GATC	5 cut(s)	49, 168, 385, 696, 727
LmnI	GCTCC	2 cut(s)	62, 362
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	2 cut(s)	332, 727
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	5 cut(s)	51, 170, 387, 698, 729
MboI	GATC	5 cut(s)	49, 168, 385, 696, 727
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	624
MluCI	AATT	9 cut(s)	54, 316, 339, 362, 392, 465, 521, 550, 580
MluNI	TGGCCA	1 cut(s)	624
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	4 cut(s)	140, 143, 463, 676
Mox20I	TGGCCA	1 cut(s)	624
Mph1103I	ATGCAT	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	624
MseI	TTAA	2 cut(s)	305, 399
Msp20I	TGGCCA	1 cut(s)	624
MspI	CCGG	3 cut(s)	198, 217, 545
MunI	CAATTG	1 cut(s)	362
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	5 cut(s)	49, 168, 385, 696, 727
NlaIII	CATG	3 cut(s)	31, 62, 636
NlaIV	GGNNCC	3 cut(s)	51, 294, 358
NmuCI	GTSAC	1 cut(s)	409
NruI	TCGCGA	1 cut(s)	590
NsiI	ATGCAT	1 cut(s)	325
PagI	TCATGA	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	686
PfeI	GAWTC	2 cut(s)	98, 259
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	619
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	429
PsiI	TTATAA	1 cut(s)	781
PspN4I	GGNNCC	3 cut(s)	51, 294, 358
PspPI	GGNCC	3 cut(s)	191, 219, 293
PsuI	RGATCY	1 cut(s)	49
RruI	TCGCGA	1 cut(s)	590
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	305, 399
SatI	GCNGC	1 cut(s)	618
Sau3AI	GATC	5 cut(s)	49, 168, 385, 696, 727
Sau96I	GGNCC	3 cut(s)	191, 219, 293
SchI	GAGTC	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	2 cut(s)	332, 727
SinI	GGWCC	3 cut(s)	191, 219, 293
Sse9I	AATT	9 cut(s)	54, 316, 339, 362, 392, 465, 521, 550, 580
SseBI	AGGCCT	1 cut(s)	686
SspI	AATATT	2 cut(s)	21, 604
SspMI	CTAG	1 cut(s)	282
StuI	AGGCCT	1 cut(s)	686
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	431
TaqI	TCGA	3 cut(s)	108, 343, 348
TasI	AATT	9 cut(s)	54, 316, 339, 362, 392, 465, 521, 550, 580
TfiI	GAWTC	2 cut(s)	98, 259
Tru1I	TTAA	2 cut(s)	305, 399
Tru9I	TTAA	2 cut(s)	305, 399
TscAI	CASTG	3 cut(s)	193, 706, 724
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	5 cut(s)	16, 47, 76, 90, 662
TspGWI	ACGGA	1 cut(s)	720
TspRI	CASTG	3 cut(s)	193, 706, 724
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	3 cut(s)	191, 219, 293
XapI	RAATTY	5 cut(s)	339, 465, 521, 550, 580
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.