Prupe.4G071200_v2.0.a1

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
3489597 .. 3493592
3996 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G071200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1680 bp
ATGGTGAAGCACTACAGGCCTCCCGGCAAGAAAAACGAAGGTAATGCTGCAAGGTTCATCACCAGGTCAAAAGCCATCAAGCAACTTCAAGTCAGTCTACCTCTCTTCAGGAAAGTATGTATTCTGAAGGGGATATTCCCTCGGGAGCCAAAGAAGAAGGTGAAAGGAAATCACCATACTTATTATCACTTAAAGGATGTTTCATACATCCAACATGAACCATTACTCGAGCGCTTGAGAGAGATCAGGGCTTATCAACACAAAGTAAAGAAAGCCGAGGCCAAGAAGAACCCGGATCGTGCTACTCTTCTCAGACAAAGAAGTCCTGCTTACAAATTAGACAAAATTGTTTTGCAGAGGTATCCGAAATTCCTTGATGCTCTTAGAGATTTGGATGACTGTCTCACAATGGTTCACCTCTTTGCCGCCTTACCTGCTATTGAGGGCTGTATTGAAGTGAAACGCATCCATAACTGTCGGAGGTTGGCTCATGAATGGCAGGCTTACATATCTCGTACGCATAGATTGCGTAAAGTCTTTGTATCTGTTAAAGGCATATATTATCAGGCCGAGGTTAAAGGGCAAAAGGTCACATGGTTGGCTCCTCACCCTTTGCAGCAAGTTGTGACGGATGATGATGACTTCAATATCATGCTAAACTTTTTGGAGTTTTACGAGGCTCTTCTTGCCTTTGCGAATTGTCATTTATATCATTCAATAAATGTGAAGTATCCACCCATTCTTGATCCTCGATTGGAAGCTTTAGCAGCAGATCATTATGCTCTATCAAGGTATTTCGATGCAAACTCTCGATCCTCTGCGTGGGATCGCCAAGATTCAAGTTTGTCTGGATCTGGGAAAGTTGAGAGCCAGCAGATTGGGCCTTTGGTGGATGAGTCTGAACCAAGACTTGCCCAACTGCAGCATCAACTCTCCTCAAATGAACCTGGTGCATTGATGCACCTTGTGGAGGATGTTCCAGGTGAGGATGAAGAGGATAATAATACGAGGGAGTGCAAGAAATTCTTCAAAGATATGAAATTTTTCTTGAACCGTGAGGTTTACAGAGATTCTCTGCTTTTTGTCATACCTGCTTTCGGTGGAATTGTTTCCTGGCAAGGAGATGGGGCTCCCTTTGAGGAAGATGATGACAGCATCACCCATCAGATTATTGACAGGCCAAGGCAGGATGGGAAGATCTGTGGTAGAGAATATGTTCACCCACAGTGGGTTTATGATTGTGTAAATGCTCGGATCATTTTACCAACTGGGGATTATTTGGTGGGAAGGGATCCTCCTCCACACTTGTCACCTTTTGTTGACAATGACTCTTTCGAGACCGAAGGTGTTATTAACCCAGCAGAAGCAGAAGCAGAAGCTGCAAGGGAAAAGCGGAAGAAGATGAAGGCTCATGAGAAGCAGCATCATCATGAATTAATTATGGAACTTGAGGGTGTCACAGATTCATCATCTATCTCGAATATAGATAATCTGAGCGCTGATAGGGAAGAATCTGATCATGATTATGAGCAAGTTGAGGAGGATAACAGAATTATGTCTGAAATTGAATGGTCACGTCGGTTCAGGGGGAGTATTGAAAGCATTAGGATAAACAGGCAACGAAAGAAGCGCCTTGATGATGTTATTAGGCAACGGAGGAGAAACCTTAGAAGAACATGA

Protein Analysis

560

Amino Acids

65.12

Weight (kDa)

8.24

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 321
Acc36I ACCTGC 2 cut(s) 442, 1099
AccI GTMKAC 1 cut(s) 97
AciI CCGC 2 cut(s) 426, 1393
AclWI GGATC 8 cut(s) 303, 740, 807, 834, 859, 1262, 1286, 1299
AcsI RAATTY 3 cut(s) 368, 1022, 1040
AcuI CTGAAG 2 cut(s) 91, 146
AdeI CACNNNGTG 1 cut(s) 967
AfaI GTAC 1 cut(s) 517
AfeI AGCGCT 2 cut(s) 233, 1498
AfiI CCNNNNNNNGG 4 cut(s) 822, 970, 1097, 1228
AgsI TTSAA 9 cut(s) 89, 455, 646, 717, 840, 1030, 1051, 1568, 1598
AjiI CACGTC 1 cut(s) 1577
AjnI CCWGG 4 cut(s) 62, 946, 979, 1112
AluBI AGCT 2 cut(s) 761, 1379
AluI AGCT 2 cut(s) 761, 1379
Alw26I GTCTC 2 cut(s) 407, 1331
AlwI GGATC 8 cut(s) 303, 740, 807, 834, 859, 1262, 1286, 1299
AlwNI CAGNNNCTG 1 cut(s) 1379
Ama87I CYCGRG 2 cut(s) 141, 227
Aor51HI AGCGCT 2 cut(s) 233, 1498
AoxI GGCC 5 cut(s) 17, 279, 567, 881, 1178
ApeKI GCWGC 6 cut(s) 47, 616, 767, 922, 1379, 1420
ApoI RAATTY 3 cut(s) 368, 1022, 1040
AseI ATTAAT 1 cut(s) 1436
Asp700I GAANNNNTTC 4 cut(s) 1025, 1043, 1108, 1215
AspLEI GCGC 3 cut(s) 234, 1499, 1632
AspS9I GGNCC 1 cut(s) 881
AsuC2I CCSGG 2 cut(s) 24, 293
AvaI CYCGRG 2 cut(s) 141, 227
BamHI GGATCC 1 cut(s) 1291
BanII GRGCYC 1 cut(s) 1132
BbvI GCAGC 6 cut(s) 34, 628, 779, 934, 1366, 1432
BccI CCATC 4 cut(s) 83, 1118, 1170, 1184
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 4 cut(s) 64, 948, 981, 1114
BciVI GTATCC 2 cut(s) 372, 741
BclI TGATCA 1 cut(s) 1516
BcnI CCSGG 2 cut(s) 24, 293
BcoDI GTCTC 2 cut(s) 407, 1331
BfmI CTRYAG 2 cut(s) 13, 920
BfoI RGCGCY 3 cut(s) 235, 1500, 1633
BfuAI ACCTGC 2 cut(s) 442, 1099
BfuI GTATCC 2 cut(s) 372, 741
BglII AGATCT 1 cut(s) 1197
BisI GCNGC 7 cut(s) 48, 426, 617, 768, 923, 1380, 1421
BlsI GCNGC 7 cut(s) 49, 427, 618, 769, 924, 1381, 1422
Bme1390I CCNGG 6 cut(s) 24, 64, 293, 948, 981, 1114
BmeT110I CYCGRG 2 cut(s) 141, 227
BmgBI CACGTC 1 cut(s) 1577
BmgT120I GGNCC 1 cut(s) 881
BmiI GGNNCC 4 cut(s) 147, 603, 1131, 1293
BmrFI CCNGG 6 cut(s) 24, 64, 293, 948, 981, 1114
BmrI ACTGGG 1 cut(s) 1278
BmsI GCATC 7 cut(s) 367, 474, 790, 934, 948, 1164, 1432
BmuI ACTGGG 1 cut(s) 1278
BplI GAGNNNNNCTC 2 cut(s) 472, 504
BpuEI CTTGAG 2 cut(s) 256, 1469
BpuMI CCSGG 2 cut(s) 24, 293
BsaI GGTCTC 1 cut(s) 1331
BsaJI CCNNGG 4 cut(s) 140, 276, 570, 1181
Bsc4I CCNNNNNNNGG 4 cut(s) 822, 970, 1097, 1228
Bse1I ACTGG 1 cut(s) 1273
BseBI CCWGG 4 cut(s) 64, 948, 981, 1114
BseDI CCNNGG 4 cut(s) 140, 276, 570, 1181
BseGI GGATG 9 cut(s) 202, 207, 400, 465, 637, 898, 979, 994, 1195
BseLI CCNNNNNNNGG 4 cut(s) 822, 970, 1097, 1228
BseMII CTCAG 2 cut(s) 325, 1484
BseNI ACTGG 1 cut(s) 1273
BseRI GAGGAG 5 cut(s) 594, 925, 1287, 1553, 1672
BseXI GCAGC 6 cut(s) 34, 628, 779, 934, 1366, 1432
BseYI CCCAGC 1 cut(s) 1357
BshFI GGCC 5 cut(s) 19, 281, 569, 883, 1180
BsiHKCI CYCGRG 2 cut(s) 141, 227
BsiSI CCGG 2 cut(s) 24, 293
BsiWI CGTACG 1 cut(s) 515
BslI CCNNNNNNNGG 4 cut(s) 822, 970, 1097, 1228
BsmAI GTCTC 2 cut(s) 407, 1331
BsnI GGCC 5 cut(s) 19, 281, 569, 883, 1180
Bso31I GGTCTC 1 cut(s) 1331
BsoBI CYCGRG 2 cut(s) 141, 227
Bsp1286I GDGCHC 1 cut(s) 1132
BspACI CCGC 2 cut(s) 426, 1393
BspANI GGCC 5 cut(s) 19, 281, 569, 883, 1180
BspCNI CTCAG 2 cut(s) 324, 1485
BspHI TCATGA 4 cut(s) 490, 1411, 1429, 1519
BspLI GGNNCC 4 cut(s) 147, 603, 1131, 1293
BspMAI CTGCAG 1 cut(s) 924
BspMI ACCTGC 2 cut(s) 442, 1099
BspPI GGATC 8 cut(s) 303, 740, 807, 834, 859, 1262, 1286, 1299
BspQI GCTCTTC 1 cut(s) 687
BspTNI GGTCTC 1 cut(s) 1331
BsrI ACTGG 1 cut(s) 1273
BssECI CCNNGG 4 cut(s) 140, 276, 570, 1181
BssT1I CCWWGG 1 cut(s) 1181
Bst2UI CCWGG 4 cut(s) 64, 948, 981, 1114
Bst4CI ACNGT 4 cut(s) 401, 476, 1055, 1227
Bst6I CTCTTC 4 cut(s) 110, 312, 687, 987
BstAPI GCANNNNNTGC 2 cut(s) 526, 1379
BstC8I GCNNGC 2 cut(s) 501, 872
BstDEI CTNAG 4 cut(s) 311, 383, 1493, 1667
BstENI CCTNNNNNAGG 1 cut(s) 968
BstF5I GGATG 9 cut(s) 202, 207, 400, 465, 637, 898, 979, 994, 1195
BstH2I RGCGCY 3 cut(s) 235, 1500, 1633
BstHHI GCGC 3 cut(s) 234, 1499, 1632
BstMAI GTCTC 2 cut(s) 407, 1331
BstMWI GCNNNNNNNGC 7 cut(s) 16, 434, 526, 686, 767, 880, 1379
BstNI CCWGG 4 cut(s) 64, 948, 981, 1114
BstSCI CCNGG 6 cut(s) 22, 62, 291, 946, 979, 1112
BstSFI CTRYAG 2 cut(s) 13, 920
BstV1I GCAGC 6 cut(s) 34, 628, 779, 934, 1366, 1432
BstX2I RGATCY 3 cut(s) 851, 1197, 1291
BstXI CCANNNNNNTGG 1 cut(s) 878
BstYI RGATCY 3 cut(s) 851, 1197, 1291
BsuI GTATCC 2 cut(s) 372, 741
BsuRI GGCC 5 cut(s) 19, 281, 569, 883, 1180
BtrI CACGTC 1 cut(s) 1577
BtsCI GGATG 9 cut(s) 202, 207, 400, 465, 637, 898, 979, 994, 1195
BtsIMutI CAGTG 1 cut(s) 1232
BveI ACCTGC 2 cut(s) 442, 1099
Cac8I GCNNGC 2 cut(s) 501, 872
CaiI CAGNNNCTG 1 cut(s) 1379
CciI TCATGA 4 cut(s) 490, 1411, 1429, 1519
CfoI GCGC 3 cut(s) 234, 1499, 1632
Cfr13I GGNCC 1 cut(s) 881
CsiI ACCWGGT 2 cut(s) 62, 946
Csp6I GTAC 1 cut(s) 516
CviAII CATG 8 cut(s) 215, 491, 594, 652, 1412, 1430, 1520, 1677
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 4 cut(s) 311, 383, 1493, 1667
DraIII CACNNNGTG 1 cut(s) 967
DrdI GACNNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 4 cut(s) 110, 312, 687, 987
EarI CTCTTC 4 cut(s) 110, 312, 687, 987
Eco130I CCWWGG 1 cut(s) 1181
Eco147I AGGCCT 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 1132
Eco31I GGTCTC 1 cut(s) 1331
Eco47III AGCGCT 2 cut(s) 233, 1498
Eco57I CTGAAG 2 cut(s) 91, 146
Eco88I CYCGRG 2 cut(s) 141, 227
EcoNI CCTNNNNNAGG 1 cut(s) 968
EcoRII CCWGG 4 cut(s) 62, 946, 979, 1112
EcoT14I CCWWGG 1 cut(s) 1181
EcoT38I GRGCYC 1 cut(s) 1132
ErhI CCWWGG 1 cut(s) 1181
FaeI CATG 8 cut(s) 218, 494, 597, 655, 1415, 1433, 1523, 1680
FalI AAGNNNNNCTT 4 cut(s) 313, 345, 1010, 1042
FatI CATG 8 cut(s) 214, 490, 593, 651, 1411, 1429, 1519, 1676
FbaI TGATCA 1 cut(s) 1516
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 7 cut(s) 48, 426, 617, 768, 923, 1380, 1421
FokI GGATG 9 cut(s) 194, 209, 407, 452, 644, 905, 986, 1001, 1202
FriOI GRGCYC 1 cut(s) 1132
Fsp4HI GCNGC 7 cut(s) 48, 426, 617, 768, 923, 1380, 1421
GlaI GCGC 3 cut(s) 233, 1498, 1631
GluI GCNGC 7 cut(s) 48, 426, 617, 768, 923, 1380, 1421
GsaI CCCAGC 1 cut(s) 1361
HaeII RGCGCY 3 cut(s) 235, 1500, 1633
HaeIII GGCC 5 cut(s) 19, 281, 569, 883, 1180
HapII CCGG 2 cut(s) 24, 293
HhaI GCGC 3 cut(s) 234, 1499, 1632
Hin1II CATG 8 cut(s) 218, 494, 597, 655, 1415, 1433, 1523, 1680
Hin6I GCGC 3 cut(s) 232, 1497, 1630
HinP1I GCGC 3 cut(s) 232, 1497, 1630
HincII GTYRAC 1 cut(s) 1321
HindII GTYRAC 1 cut(s) 1321
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 6 cut(s) 836, 896, 1070, 1328, 1463, 1511
HpaII CCGG 2 cut(s) 24, 293
Hpy166II GTNNAC 5 cut(s) 98, 415, 1063, 1219, 1321
Hpy8I GTNNAC 5 cut(s) 98, 415, 1063, 1219, 1321
Hpy99I CGWCG 1 cut(s) 1581
HpyAV CCTTC 6 cut(s) 32, 121, 151, 1281, 1337, 1399
HpyCH4III ACNGT 4 cut(s) 401, 476, 1055, 1227
HpyCH4IV ACGT 1 cut(s) 1576
HpyCH4V TGCA 9 cut(s) 50, 355, 616, 803, 922, 953, 961, 1017, 1382
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 434, 526, 686, 767, 880, 1379
HpyF3I CTNAG 4 cut(s) 311, 383, 1493, 1667
HpySE526I ACGT 1 cut(s) 1576
Hsp92II CATG 8 cut(s) 218, 494, 597, 655, 1415, 1433, 1523, 1680
HspAI GCGC 3 cut(s) 232, 1497, 1630
Ksp22I TGATCA 1 cut(s) 1516
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 3 cut(s) 145, 607, 1135
Lsp1109I GCAGC 6 cut(s) 34, 628, 779, 934, 1366, 1432
LweI GCATC 7 cut(s) 367, 474, 790, 934, 948, 1164, 1432
MabI ACCWGGT 2 cut(s) 62, 946
MaeII ACGT 1 cut(s) 1576
MaeIII GTNAC 5 cut(s) 589, 625, 1308, 1456, 1572
MflI RGATCY 3 cut(s) 851, 1197, 1291
MhlI GDGCHC 1 cut(s) 1132
MlyI GAGTC 2 cut(s) 905, 1322
MmeI TCCRAC 2 cut(s) 235, 458
MroXI GAANNNNTTC 4 cut(s) 1025, 1043, 1108, 1215
MseI TTAA 5 cut(s) 191, 549, 576, 1353, 1436
MslI CAYNNNNRTG 2 cut(s) 1428, 1524
MspI CCGG 2 cut(s) 24, 293
MspR9I CCNGG 6 cut(s) 24, 64, 293, 948, 981, 1114
MvaI CCWGG 4 cut(s) 64, 948, 981, 1114
MwoI GCNNNNNNNGC 7 cut(s) 16, 434, 526, 686, 767, 880, 1379
NciI CCSGG 2 cut(s) 24, 293
NlaIII CATG 8 cut(s) 218, 494, 597, 655, 1415, 1433, 1523, 1680
NlaIV GGNNCC 4 cut(s) 147, 603, 1131, 1293
NmeAIII GCCGAG 2 cut(s) 301, 595
NmuCI GTSAC 5 cut(s) 589, 625, 1308, 1456, 1572
PaeR7I CTCGAG 1 cut(s) 227
PagI TCATGA 4 cut(s) 490, 1411, 1429, 1519
PceI AGGCCT 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 687
PdmI GAANNNNTTC 4 cut(s) 1025, 1043, 1108, 1215
PfeI GAWTC 4 cut(s) 836, 1070, 1463, 1511
Pfl23II CGTACG 1 cut(s) 515
PkrI GCNGC 7 cut(s) 49, 427, 618, 769, 924, 1381, 1422
PleI GAGTC 2 cut(s) 904, 1322
PpsI GAGTC 2 cut(s) 904, 1322
PshBI ATTAAT 1 cut(s) 1436
Psp6I CCWGG 4 cut(s) 62, 946, 979, 1112
PspFI CCCAGC 1 cut(s) 1357
PspGI CCWGG 4 cut(s) 62, 946, 979, 1112
PspLI CGTACG 1 cut(s) 515
PspN4I GGNNCC 4 cut(s) 147, 603, 1131, 1293
PspPI GGNCC 1 cut(s) 881
PspXI VCTCGAGB 1 cut(s) 227
PstI CTGCAG 1 cut(s) 924
PstNI CAGNNNCTG 1 cut(s) 1379
PsuI RGATCY 3 cut(s) 851, 1197, 1291
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
RseI CAYNNNNRTG 2 cut(s) 1428, 1524
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 5 cut(s) 191, 549, 576, 1353, 1436
SatI GCNGC 7 cut(s) 48, 426, 617, 768, 923, 1380, 1421
Sau96I GGNCC 1 cut(s) 881
SchI GAGTC 2 cut(s) 905, 1322
ScrFI CCNGG 6 cut(s) 24, 64, 293, 948, 981, 1114
SduI GDGCHC 1 cut(s) 1132
SexAI ACCWGGT 2 cut(s) 62, 946
SfaNI GCATC 7 cut(s) 367, 474, 790, 934, 948, 1164, 1432
SfcI CTRYAG 2 cut(s) 13, 920
Sfr274I CTCGAG 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 1428, 1524
SmlI CTYRAG 3 cut(s) 227, 235, 1448
SmoI CTYRAG 3 cut(s) 227, 235, 1448
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 2 cut(s) 426, 1393
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 6 cut(s) 22, 62, 291, 946, 979, 1112
StyI CCWWGG 1 cut(s) 1181
TaaI ACNGT 4 cut(s) 401, 476, 1055, 1227
TaiI ACGT 1 cut(s) 1579
TaqI TCGA 6 cut(s) 228, 751, 798, 811, 1335, 1478
TaqII GACCGA 1 cut(s) 1355
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 4 cut(s) 836, 1070, 1463, 1511
Tru1I TTAA 5 cut(s) 191, 549, 576, 1353, 1436
Tru9I TTAA 5 cut(s) 191, 549, 576, 1353, 1436
TscAI CASTG 1 cut(s) 1232
TseFI GTSAC 5 cut(s) 589, 625, 1308, 1456, 1572
TseI GCWGC 6 cut(s) 47, 616, 767, 922, 1379, 1420
Tsp45I GTSAC 5 cut(s) 589, 625, 1308, 1456, 1572
TspGWI ACGGA 2 cut(s) 644, 1669
TspRI CASTG 1 cut(s) 1232
VspI ATTAAT 1 cut(s) 1436
XagI CCTNNNNNAGG 1 cut(s) 968
XapI RAATTY 3 cut(s) 368, 1022, 1040
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 97
XmnI GAANNNNTTC 4 cut(s) 1025, 1043, 1108, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.