Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| prunus_persica | Prupe.4G078800_v2.0.a1 Prupe.4G078800_v2.0.a1 Prupe.4G078800_v2.0.a1 Prupe.4G078900_v2.0.a1 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 585 |
| AarI | CACCTGC | 1 cut(s) | 745 |
| Acc36I | ACCTGC | 1 cut(s) | 745 |
| Acc65I | GGTACC | 1 cut(s) | 268 |
| AccB1I | GGYRCC | 1 cut(s) | 268 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2044 |
| AccII | CGCG | 1 cut(s) | 2795 |
| AciI | CCGC | 4 cut(s) | 1797, 2063, 2573, 2795 |
| AclWI | GGATC | 6 cut(s) | 590, 1394, 1607, 2217, 2285, 2421 |
| AcoI | YGGCCR | 1 cut(s) | 1722 |
| AcsI | RAATTY | 5 cut(s) | 383, 529, 578, 1362, 3049 |
| AcuI | CTGAAG | 1 cut(s) | 876 |
| AdeI | CACNNNGTG | 1 cut(s) | 2044 |
| AfaI | GTAC | 8 cut(s) | 270, 698, 771, 1345, 1493, 2126, 2915, 3057 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 681, 2044, 2069, 2390, 2605 |
| AflII | CTTAAG | 1 cut(s) | 2009 |
| AjiI | CACGTC | 1 cut(s) | 2657 |
| AjnI | CCWGG | 4 cut(s) | 556, 633, 1163, 2040 |
| Alw21I | GWGCWC | 1 cut(s) | 2338 |
| Alw26I | GTCTC | 1 cut(s) | 2071 |
| AlwI | GGATC | 6 cut(s) | 590, 1394, 1607, 2217, 2285, 2421 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1116, 1585, 1765 |
| Ama87I | CYCGRG | 1 cut(s) | 1990 |
| AoxI | GGCC | 4 cut(s) | 953, 1722, 2392, 2640 |
| ApeKI | GCWGC | 9 cut(s) | 245, 313, 663, 1160, 1310, 1878, 1920, 2674, 2894 |
| ApoI | RAATTY | 5 cut(s) | 383, 529, 578, 1362, 3049 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1406, 1438 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 110, 285, 1230, 1716, 2498 |
| Asp718I | GGTACC | 1 cut(s) | 268 |
| AspLEI | GCGC | 1 cut(s) | 632 |
| AspS9I | GGNCC | 2 cut(s) | 812, 2140 |
| AsuC2I | CCSGG | 5 cut(s) | 47, 710, 1991, 1992, 2189 |
| AsuHPI | GGTGA | 7 cut(s) | 391, 1022, 1136, 1223, 1862, 2117, 2521 |
| AsuII | TTCGAA | 1 cut(s) | 208 |
| AvaI | CYCGRG | 1 cut(s) | 1990 |
| AvaII | GGWCC | 2 cut(s) | 812, 2140 |
| BalI | TGGCCA | 1 cut(s) | 1724 |
| BanI | GGYRCC | 1 cut(s) | 268 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2703, 2735 |
| BbsI | GAAGAC | 3 cut(s) | 103, 1348, 1941 |
| Bbv12I | GWGCWC | 1 cut(s) | 2338 |
| BbvI | GCAGC | 9 cut(s) | 232, 300, 650, 1147, 1297, 1890, 1932, 2661, 2906 |
| BceAI | ACGGC | 3 cut(s) | 205, 1113, 2713 |
| BciT130I | CCWGG | 4 cut(s) | 558, 635, 1165, 2042 |
| BciVI | GTATCC | 2 cut(s) | 861, 969 |
| BclI | TGATCA | 1 cut(s) | 496 |
| BcnI | CCSGG | 5 cut(s) | 47, 710, 1991, 1992, 2189 |
| BcoDI | GTCTC | 1 cut(s) | 2071 |
| BfaI | CTAG | 8 cut(s) | 294, 446, 590, 600, 960, 1469, 2399, 2820 |
| BfmI | CTRYAG | 2 cut(s) | 246, 1746 |
| BfrI | CTTAAG | 1 cut(s) | 2009 |
| BfuAI | ACCTGC | 1 cut(s) | 745 |
| BfuI | GTATCC | 2 cut(s) | 861, 969 |
| BglII | AGATCT | 2 cut(s) | 1802, 2347 |
| BisI | GCNGC | 9 cut(s) | 246, 314, 664, 1161, 1311, 1879, 1921, 2675, 2895 |
| BlsI | GCNGC | 9 cut(s) | 247, 315, 665, 1162, 1312, 1880, 1922, 2676, 2896 |
| Bme1390I | CCNGG | 9 cut(s) | 47, 558, 635, 710, 1165, 1991, 1992, 2042, 2189 |
| Bme18I | GGWCC | 2 cut(s) | 812, 2140 |
| BmeT110I | CYCGRG | 1 cut(s) | 1990 |
| BmgBI | CACGTC | 1 cut(s) | 2657 |
| BmgT120I | GGNCC | 2 cut(s) | 812, 2140 |
| BmiI | GGNNCC | 3 cut(s) | 270, 2141, 2142 |
| BmrFI | CCNGG | 9 cut(s) | 47, 558, 635, 710, 1165, 1991, 1992, 2042, 2189 |
| BmsI | GCATC | 9 cut(s) | 146, 314, 900, 1696, 1719, 2709, 2875, 2912, 3051 |
| BpiI | GAAGAC | 3 cut(s) | 103, 1348, 1941 |
| BpmI | CTGGAG | 4 cut(s) | 656, 1742, 2246, 3002 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2098 |
| Bpu14I | TTCGAA | 1 cut(s) | 208 |
| BpuEI | CTTGAG | 1 cut(s) | 922 |
| BpuMI | CCSGG | 5 cut(s) | 47, 710, 1991, 1992, 2189 |
| BsaI | GGTCTC | 1 cut(s) | 2071 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 681, 2044, 2069, 2390, 2605 |
| Bse118I | RCCGGY | 1 cut(s) | 1829 |
| Bse1I | ACTGG | 6 cut(s) | 85, 694, 1121, 2229, 2395, 2971 |
| Bse3DI | GCAATG | 2 cut(s) | 1868, 2030 |
| BseBI | CCWGG | 4 cut(s) | 558, 635, 1165, 2042 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 681, 2044, 2069, 2390, 2605 |
| BseMI | GCAATG | 2 cut(s) | 1868, 2030 |
| BseMII | CTCAG | 2 cut(s) | 291, 2112 |
| BseNI | ACTGG | 6 cut(s) | 85, 694, 1121, 2229, 2395, 2971 |
| BseRI | GAGGAG | 3 cut(s) | 2148, 2252, 3005 |
| BseXI | GCAGC | 9 cut(s) | 232, 300, 650, 1147, 1297, 1890, 1932, 2661, 2906 |
| BsgI | GTGCAG | 3 cut(s) | 299, 560, 2913 |
| Bsh1236I | CGCG | 1 cut(s) | 2795 |
| BshFI | GGCC | 4 cut(s) | 955, 1724, 2394, 2642 |
| BshNI | GGYRCC | 1 cut(s) | 268 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2338 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1990 |
| BsiSI | CCGG | 7 cut(s) | 47, 195, 709, 1830, 1991, 2189, 2411 |
| BslFI | GGGAC | 4 cut(s) | 28, 1775, 2009, 2153 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 681, 2044, 2069, 2390, 2605 |
| BsmAI | GTCTC | 1 cut(s) | 2071 |
| BsmFI | GGGAC | 4 cut(s) | 28, 1775, 2009, 2153 |
| BsmI | GAATGC | 1 cut(s) | 2099 |
| BsnI | GGCC | 4 cut(s) | 955, 1724, 2394, 2642 |
| Bso31I | GGTCTC | 1 cut(s) | 2071 |
| BsoBI | CYCGRG | 1 cut(s) | 1990 |
| Bsp119I | TTCGAA | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2338 |
| Bsp1407I | TGTACA | 2 cut(s) | 769, 3055 |
| Bsp19I | CCATGG | 1 cut(s) | 2993 |
| BspACI | CCGC | 4 cut(s) | 1797, 2063, 2573, 2795 |
| BspANI | GGCC | 4 cut(s) | 955, 1724, 2394, 2642 |
| BspCNI | CTCAG | 2 cut(s) | 290, 2111 |
| BspFNI | CGCG | 1 cut(s) | 2795 |
| BspHI | TCATGA | 1 cut(s) | 2212 |
| BspLI | GGNNCC | 3 cut(s) | 270, 2141, 2142 |
| BspMAI | CTGCAG | 2 cut(s) | 250, 1750 |
| BspMI | ACCTGC | 1 cut(s) | 745 |
| BspPI | GGATC | 6 cut(s) | 590, 1394, 1607, 2217, 2285, 2421 |
| BspQI | GCTCTTC | 1 cut(s) | 1192 |
| BspT104I | TTCGAA | 1 cut(s) | 208 |
| BspT107I | GGYRCC | 1 cut(s) | 268 |
| BspTI | CTTAAG | 1 cut(s) | 2009 |
| BspTNI | GGTCTC | 1 cut(s) | 2071 |
| BsrDI | GCAATG | 2 cut(s) | 1868, 2030 |
| BsrFI | RCCGGY | 1 cut(s) | 1829 |
| BsrGI | TGTACA | 2 cut(s) | 769, 3055 |
| BsrI | ACTGG | 6 cut(s) | 85, 694, 1121, 2229, 2395, 2971 |
| BssAI | RCCGGY | 1 cut(s) | 1829 |
| BssT1I | CCWWGG | 4 cut(s) | 534, 1191, 2427, 2993 |
| Bst2UI | CCWGG | 4 cut(s) | 558, 635, 1165, 2042 |
| Bst4CI | ACNGT | 7 cut(s) | 13, 94, 345, 1874, 1940, 2200, 2299 |
| Bst6I | CTCTTC | 3 cut(s) | 79, 1192, 2965 |
| BstAFI | CTTAAG | 1 cut(s) | 2009 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 170, 1157, 1745 |
| BstAUI | TGTACA | 2 cut(s) | 769, 3055 |
| BstBI | TTCGAA | 1 cut(s) | 208 |
| BstC8I | GCNNGC | 7 cut(s) | 564, 715, 719, 2028, 2396, 2424, 2672 |
| BstDEI | CTNAG | 6 cut(s) | 277, 336, 2098, 2128, 2583, 2723 |
| BstDSI | CCRYGG | 2 cut(s) | 1873, 2993 |
| BstFNI | CGCG | 1 cut(s) | 2795 |
| BstHHI | GCGC | 1 cut(s) | 632 |
| BstMAI | GTCTC | 1 cut(s) | 2071 |
| BstNI | CCWGG | 4 cut(s) | 558, 635, 1165, 2042 |
| BstNSI | RCATGY | 7 cut(s) | 164, 1160, 1441, 1739, 2002, 2522, 2892 |
| BstSCI | CCNGG | 9 cut(s) | 45, 556, 633, 708, 1163, 1989, 1990, 2040, 2187 |
| BstSFI | CTRYAG | 2 cut(s) | 246, 1746 |
| BstUI | CGCG | 1 cut(s) | 2795 |
| BstV1I | GCAGC | 9 cut(s) | 232, 300, 650, 1147, 1297, 1890, 1932, 2661, 2906 |
| BstV2I | GAAGAC | 3 cut(s) | 103, 1348, 1941 |
| BstX2I | RGATCY | 2 cut(s) | 1802, 2347 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 122 |
| BstYI | RGATCY | 2 cut(s) | 1802, 2347 |
| BsuI | GTATCC | 2 cut(s) | 861, 969 |
| BsuRI | GGCC | 4 cut(s) | 955, 1724, 2394, 2642 |
| BtgI | CCRYGG | 2 cut(s) | 1873, 2993 |
| BtrI | CACGTC | 1 cut(s) | 2657 |
| BtsI | GCAGTG | 2 cut(s) | 60, 2568 |
| BtsIMutI | CAGTG | 5 cut(s) | 60, 90, 1921, 2222, 2568 |
| BveI | ACCTGC | 1 cut(s) | 745 |
| Cac8I | GCNNGC | 7 cut(s) | 564, 715, 719, 2028, 2396, 2424, 2672 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1116, 1585, 1765 |
| CciI | TCATGA | 1 cut(s) | 2212 |
| CfoI | GCGC | 1 cut(s) | 632 |
| Cfr10I | RCCGGY | 1 cut(s) | 1829 |
| Cfr13I | GGNCC | 2 cut(s) | 812, 2140 |
| Cfr9I | CCCGGG | 1 cut(s) | 1990 |
| CsiI | ACCWGGT | 1 cut(s) | 2040 |
| Csp6I | GTAC | 8 cut(s) | 269, 697, 770, 1344, 1492, 2125, 2914, 3056 |
| CviQI | GTAC | 8 cut(s) | 269, 697, 770, 1344, 1492, 2125, 2914, 3056 |
| DdeI | CTNAG | 6 cut(s) | 277, 336, 2098, 2128, 2583, 2723 |
| DraI | TTTAAA | 1 cut(s) | 1674 |
| DraIII | CACNNNGTG | 1 cut(s) | 2044 |
| EaeI | YGGCCR | 1 cut(s) | 1722 |
| Eam1104I | CTCTTC | 3 cut(s) | 79, 1192, 2965 |
| EarI | CTCTTC | 3 cut(s) | 79, 1192, 2965 |
| Eco130I | CCWWGG | 4 cut(s) | 534, 1191, 2427, 2993 |
| Eco31I | GGTCTC | 1 cut(s) | 2071 |
| Eco47I | GGWCC | 2 cut(s) | 812, 2140 |
| Eco57I | CTGAAG | 1 cut(s) | 876 |
| Eco88I | CYCGRG | 1 cut(s) | 1990 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2140 |
| EcoRII | CCWGG | 4 cut(s) | 556, 633, 1163, 2040 |
| EcoT14I | CCWWGG | 4 cut(s) | 534, 1191, 2427, 2993 |
| EcoT22I | ATGCAT | 2 cut(s) | 1741, 2890 |
| ErhI | CCWWGG | 4 cut(s) | 534, 1191, 2427, 2993 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 302, 334, 1256, 1288, 2716, 2748 |
| FaqI | GGGAC | 4 cut(s) | 28, 1775, 2009, 2153 |
| FauI | CCCGC | 1 cut(s) | 2070 |
| FbaI | TGATCA | 1 cut(s) | 496 |
| Fnu4HI | GCNGC | 9 cut(s) | 246, 314, 664, 1161, 1311, 1879, 1921, 2675, 2895 |
| Fsp4HI | GCNGC | 9 cut(s) | 246, 314, 664, 1161, 1311, 1879, 1921, 2675, 2895 |
| FspBI | CTAG | 8 cut(s) | 294, 446, 590, 600, 960, 1469, 2399, 2820 |
| GlaI | GCGC | 1 cut(s) | 631 |
| GluI | GCNGC | 9 cut(s) | 246, 314, 664, 1161, 1311, 1879, 1921, 2675, 2895 |
| GsuI | CTGGAG | 4 cut(s) | 656, 1742, 2246, 3002 |
| HaeIII | GGCC | 4 cut(s) | 955, 1724, 2394, 2642 |
| HapII | CCGG | 7 cut(s) | 47, 195, 709, 1830, 1991, 2189, 2411 |
| HhaI | GCGC | 1 cut(s) | 632 |
| Hin6I | GCGC | 1 cut(s) | 630 |
| HinP1I | GCGC | 1 cut(s) | 630 |
| HincII | GTYRAC | 2 cut(s) | 2263, 2377 |
| HindII | GTYRAC | 2 cut(s) | 2263, 2377 |
| HindIII | AAGCTT | 2 cut(s) | 2453, 2986 |
| HinfI | GANTC | 7 cut(s) | 275, 963, 1588, 2240, 2378, 2474, 2484 |
| HpaII | CCGG | 7 cut(s) | 47, 195, 709, 1830, 1991, 2189, 2411 |
| HphI | GGTGA | 7 cut(s) | 391, 1022, 1136, 1223, 1862, 2117, 2521 |
| Hpy166II | GTNNAC | 4 cut(s) | 1536, 1985, 2263, 2377 |
| Hpy8I | GTNNAC | 4 cut(s) | 1536, 1985, 2263, 2377 |
| HpyAV | CCTTC | 5 cut(s) | 100, 1538, 2506, 2575, 2806 |
| HpyCH4III | ACNGT | 7 cut(s) | 13, 94, 345, 1874, 1940, 2200, 2299 |
| HpyCH4IV | ACGT | 3 cut(s) | 216, 1557, 2656 |
| HpyF3I | CTNAG | 6 cut(s) | 277, 336, 2098, 2128, 2583, 2723 |
| HpySE526I | ACGT | 3 cut(s) | 216, 1557, 2656 |
| HspAI | GCGC | 1 cut(s) | 630 |
| KflI | GGGWCCC | 1 cut(s) | 2140 |
| KpnI | GGTACC | 1 cut(s) | 272 |
| Ksp22I | TGATCA | 1 cut(s) | 496 |
| LguI | GCTCTTC | 1 cut(s) | 1192 |
| LmnI | GCTCC | 5 cut(s) | 1485, 1761, 2341, 2515, 3018 |
| Lsp1109I | GCAGC | 9 cut(s) | 232, 300, 650, 1147, 1297, 1890, 1932, 2661, 2906 |
| LweI | GCATC | 9 cut(s) | 146, 314, 900, 1696, 1719, 2709, 2875, 2912, 3051 |
| MabI | ACCWGGT | 1 cut(s) | 2040 |
| MaeI | CTAG | 8 cut(s) | 294, 446, 590, 600, 960, 1469, 2399, 2820 |
| MaeII | ACGT | 3 cut(s) | 216, 1557, 2656 |
| MaeIII | GTNAC | 6 cut(s) | 55, 1694, 2218, 2648, 2920, 2936 |
| MfeI | CAATTG | 3 cut(s) | 612, 1592, 2204 |
| MflI | RGATCY | 2 cut(s) | 1802, 2347 |
| MhlI | GDGCHC | 1 cut(s) | 2338 |
| MlsI | TGGCCA | 1 cut(s) | 1724 |
| MluNI | TGGCCA | 1 cut(s) | 1724 |
| MlyI | GAGTC | 6 cut(s) | 269, 972, 2249, 2372, 2483, 2493 |
| MmeI | TCCRAC | 3 cut(s) | 1427, 1479, 2527 |
| Mox20I | TGGCCA | 1 cut(s) | 1724 |
| Mph1103I | ATGCAT | 2 cut(s) | 1741, 2890 |
| MroXI | GAANNNNTTC | 5 cut(s) | 110, 285, 1230, 1716, 2498 |
| MscI | TGGCCA | 1 cut(s) | 1724 |
| MslI | CAYNNNNRTG | 5 cut(s) | 120, 2088, 2421, 2749, 2908 |
| Msp20I | TGGCCA | 1 cut(s) | 1724 |
| MspCI | CTTAAG | 1 cut(s) | 2009 |
| MspI | CCGG | 7 cut(s) | 47, 195, 709, 1830, 1991, 2189, 2411 |
| MspR9I | CCNGG | 9 cut(s) | 47, 558, 635, 710, 1165, 1991, 1992, 2042, 2189 |
| MunI | CAATTG | 3 cut(s) | 612, 1592, 2204 |
| Mva1269I | GAATGC | 1 cut(s) | 2099 |
| MvaI | CCWGG | 4 cut(s) | 558, 635, 1165, 2042 |
| MvnI | CGCG | 1 cut(s) | 2795 |
| NciI | CCSGG | 5 cut(s) | 47, 710, 1991, 1992, 2189 |
| NcoI | CCATGG | 1 cut(s) | 2993 |
| NlaIV | GGNNCC | 3 cut(s) | 270, 2141, 2142 |
| NmuCI | GTSAC | 1 cut(s) | 55 |
| NsiI | ATGCAT | 2 cut(s) | 1741, 2890 |
| NspI | RCATGY | 7 cut(s) | 164, 1160, 1441, 1739, 2002, 2522, 2892 |
| NspV | TTCGAA | 1 cut(s) | 208 |
| PagI | TCATGA | 1 cut(s) | 2212 |
| PaqCI | CACCTGC | 1 cut(s) | 745 |
| PciSI | GCTCTTC | 1 cut(s) | 1192 |
| PctI | GAATGC | 1 cut(s) | 2099 |
| PdmI | GAANNNNTTC | 5 cut(s) | 110, 285, 1230, 1716, 2498 |
| PfeI | GAWTC | 1 cut(s) | 1588 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2044 |
| PkrI | GCNGC | 9 cut(s) | 247, 315, 665, 1162, 1312, 1880, 1922, 2676, 2896 |
| PleI | GAGTC | 6 cut(s) | 269, 971, 2248, 2372, 2482, 2492 |
| PpsI | GAGTC | 6 cut(s) | 269, 971, 2248, 2372, 2482, 2492 |
| PpuMI | RGGWCCY | 1 cut(s) | 2140 |
| PsiI | TTATAA | 1 cut(s) | 585 |
| Psp5II | RGGWCCY | 1 cut(s) | 2140 |
| Psp6I | CCWGG | 4 cut(s) | 556, 633, 1163, 2040 |
| PspGI | CCWGG | 4 cut(s) | 556, 633, 1163, 2040 |
| PspN4I | GGNNCC | 3 cut(s) | 270, 2141, 2142 |
| PspPI | GGNCC | 2 cut(s) | 812, 2140 |
| PspPPI | RGGWCCY | 1 cut(s) | 2140 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 762, 794 |
| PstI | CTGCAG | 2 cut(s) | 250, 1750 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1116, 1585, 1765 |
| PsuI | RGATCY | 2 cut(s) | 1802, 2347 |
| RsaI | GTAC | 8 cut(s) | 270, 698, 771, 1345, 1493, 2126, 2915, 3057 |
| RsaNI | GTAC | 8 cut(s) | 269, 697, 770, 1344, 1492, 2125, 2914, 3056 |
| RseI | CAYNNNNRTG | 5 cut(s) | 120, 2088, 2421, 2749, 2908 |
| SapI | GCTCTTC | 1 cut(s) | 1192 |
| SatI | GCNGC | 9 cut(s) | 246, 314, 664, 1161, 1311, 1879, 1921, 2675, 2895 |
| Sau96I | GGNCC | 2 cut(s) | 812, 2140 |
| SchI | GAGTC | 6 cut(s) | 269, 972, 2249, 2372, 2483, 2493 |
| ScrFI | CCNGG | 9 cut(s) | 47, 558, 635, 710, 1165, 1991, 1992, 2042, 2189 |
| SduI | GDGCHC | 1 cut(s) | 2338 |
| SexAI | ACCWGGT | 1 cut(s) | 2040 |
| SfaNI | GCATC | 9 cut(s) | 146, 314, 900, 1696, 1719, 2709, 2875, 2912, 3051 |
| SfcI | CTRYAG | 2 cut(s) | 246, 1746 |
| SfuI | TTCGAA | 1 cut(s) | 208 |
| SinI | GGWCC | 2 cut(s) | 812, 2140 |
| SmaI | CCCGGG | 1 cut(s) | 1992 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 120, 2088, 2421, 2749, 2908 |
| SmlI | CTYRAG | 2 cut(s) | 901, 2009 |
| SmoI | CTYRAG | 2 cut(s) | 901, 2009 |
| SsiI | CCGC | 4 cut(s) | 1797, 2063, 2573, 2795 |
| SspI | AATATT | 3 cut(s) | 2557, 2693, 2785 |
| SspMI | CTAG | 8 cut(s) | 294, 446, 590, 600, 960, 1469, 2399, 2820 |
| StyD4I | CCNGG | 9 cut(s) | 45, 556, 633, 708, 1163, 1989, 1990, 2040, 2187 |
| StyI | CCWWGG | 4 cut(s) | 534, 1191, 2427, 2993 |
| TaaI | ACNGT | 7 cut(s) | 13, 94, 345, 1874, 1940, 2200, 2299 |
| TaiI | ACGT | 3 cut(s) | 219, 1560, 2659 |
| TaqI | TCGA | 8 cut(s) | 208, 261, 1332, 1366, 1513, 2757, 2861, 3063 |
| TatI | WGTACW | 4 cut(s) | 696, 769, 2124, 3055 |
| TfiI | GAWTC | 1 cut(s) | 1588 |
| TscAI | CASTG | 5 cut(s) | 60, 97, 1921, 2229, 2575 |
| TseFI | GTSAC | 1 cut(s) | 55 |
| TseI | GCWGC | 9 cut(s) | 245, 313, 663, 1160, 1310, 1878, 1920, 2674, 2894 |
| Tsp45I | GTSAC | 1 cut(s) | 55 |
| TspGWI | ACGGA | 1 cut(s) | 2636 |
| TspMI | CCCGGG | 1 cut(s) | 1990 |
| TspRI | CASTG | 5 cut(s) | 60, 97, 1921, 2229, 2575 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2044 |
| Vha464I | CTTAAG | 1 cut(s) | 2009 |
| VpaK11BI | GGWCC | 2 cut(s) | 812, 2140 |
| XapI | RAATTY | 5 cut(s) | 383, 529, 578, 1362, 3049 |
| XceI | RCATGY | 7 cut(s) | 164, 1160, 1441, 1739, 2002, 2522, 2892 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1367, 1913 |
| XmaI | CCCGGG | 1 cut(s) | 1990 |
| XmnI | GAANNNNTTC | 5 cut(s) | 110, 285, 1230, 1716, 2498 |
| XspI | CTAG | 8 cut(s) | 294, 446, 590, 600, 960, 1469, 2399, 2820 |
| Zsp2I | ATGCAT | 2 cut(s) | 1741, 2890 |