Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| prunus_persica | Prupe.4G078800_v2.0.a1 Prupe.4G078800_v2.0.a1 Prupe.4G078800_v2.0.a1 Prupe.4G078900_v2.0.a1 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 717 |
| Acc65I | GGTACC | 1 cut(s) | 3222 |
| AccB1I | GGYRCC | 1 cut(s) | 3222 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2356 |
| AccI | GTMKAC | 3 cut(s) | 1083, 2688, 2937 |
| AccII | CGCG | 1 cut(s) | 2682 |
| AciI | CCGC | 7 cut(s) | 220, 1122, 2080, 2375, 2680, 3023, 3180 |
| AclWI | GGATC | 5 cut(s) | 902, 1706, 1919, 2529, 2597 |
| AcoI | YGGCCR | 1 cut(s) | 2034 |
| AcsI | RAATTY | 8 cut(s) | 229, 383, 841, 1035, 1331, 1674, 2515, 2753 |
| AcuI | CTGAAG | 1 cut(s) | 2209 |
| AdeI | CACNNNGTG | 1 cut(s) | 2356 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 695, 803, 2356, 2381, 2702 |
| AflIII | ACRYGT | 1 cut(s) | 264 |
| AjiI | CACGTC | 1 cut(s) | 2311 |
| AjnI | CCWGG | 3 cut(s) | 868, 945, 1475 |
| AleI | CACNNNNGTG | 2 cut(s) | 676, 2304 |
| Alw21I | GWGCWC | 3 cut(s) | 1407, 2605, 2664 |
| Alw26I | GTCTC | 2 cut(s) | 48, 2383 |
| AlwI | GGATC | 5 cut(s) | 902, 1706, 1919, 2529, 2597 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1428 |
| Ama87I | CYCGRG | 1 cut(s) | 2302 |
| AoxI | GGCC | 3 cut(s) | 534, 2034, 2949 |
| ApaI | GGGCCC | 1 cut(s) | 538 |
| ApeKI | GCWGC | 9 cut(s) | 313, 699, 975, 1250, 1472, 1622, 2190, 2232, 3203 |
| ApoI | RAATTY | 8 cut(s) | 229, 383, 841, 1035, 1331, 1674, 2515, 2753 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1718, 1750 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 110, 233, 1542, 2028, 2810 |
| Asp718I | GGTACC | 1 cut(s) | 3222 |
| AspA2I | CCTAGG | 1 cut(s) | 802 |
| AspLEI | GCGC | 2 cut(s) | 1227, 2684 |
| AspS9I | GGNCC | 5 cut(s) | 534, 535, 1124, 2452, 2648 |
| AsuC2I | CCSGG | 2 cut(s) | 2303, 2304 |
| AsuHPI | GGTGA | 9 cut(s) | 391, 1334, 1448, 1535, 2318, 2429, 2441, 2833, 2869 |
| AvaI | CYCGRG | 1 cut(s) | 2302 |
| AvaII | GGWCC | 3 cut(s) | 1124, 2452, 2648 |
| AvrII | CCTAGG | 1 cut(s) | 802 |
| BaeGI | GKGCMC | 2 cut(s) | 538, 946 |
| BalI | TGGCCA | 1 cut(s) | 2036 |
| BanI | GGYRCC | 1 cut(s) | 3222 |
| BanII | GRGCYC | 3 cut(s) | 538, 1407, 2664 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3012, 3044 |
| BbsI | GAAGAC | 3 cut(s) | 103, 1660, 3125 |
| Bbv12I | GWGCWC | 3 cut(s) | 1407, 2605, 2664 |
| BbvCI | CCTCAGC | 1 cut(s) | 3290 |
| BbvI | GCAGC | 9 cut(s) | 300, 711, 962, 1237, 1459, 1609, 2202, 2244, 3215 |
| BceAI | ACGGC | 1 cut(s) | 3022 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1031, 1065 |
| BciT130I | CCWGG | 3 cut(s) | 870, 947, 1477 |
| BciVI | GTATCC | 2 cut(s) | 1173, 1281 |
| BcnI | CCSGG | 2 cut(s) | 2303, 2304 |
| BcoDI | GTCTC | 2 cut(s) | 48, 2383 |
| BfmI | CTRYAG | 2 cut(s) | 1251, 2685 |
| BfuI | GTATCC | 2 cut(s) | 1173, 1281 |
| BglII | AGATCT | 2 cut(s) | 775, 2114 |
| BlnI | CCTAGG | 1 cut(s) | 802 |
| Bme1390I | CCNGG | 5 cut(s) | 870, 947, 1477, 2303, 2304 |
| Bme18I | GGWCC | 3 cut(s) | 1124, 2452, 2648 |
| BmeT110I | CYCGRG | 1 cut(s) | 2302 |
| BmgBI | CACGTC | 1 cut(s) | 2311 |
| BmgT120I | GGNCC | 5 cut(s) | 534, 535, 1124, 2452, 2648 |
| BmiI | GGNNCC | 6 cut(s) | 535, 536, 537, 2453, 2454, 3224 |
| BmrFI | CCNGG | 5 cut(s) | 870, 947, 1477, 2303, 2304 |
| BmrI | ACTGGG | 3 cut(s) | 610, 2449, 2471 |
| BmsI | GCATC | 8 cut(s) | 314, 874, 1212, 2008, 2031, 3018, 3184, 3221 |
| BmuI | ACTGGG | 3 cut(s) | 610, 2449, 2471 |
| BpiI | GAAGAC | 3 cut(s) | 103, 1660, 3125 |
| BpmI | CTGGAG | 1 cut(s) | 30 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2410, 3290 |
| BpuMI | CCSGG | 2 cut(s) | 2303, 2304 |
| BsaI | GGTCTC | 1 cut(s) | 2383 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 254, 284, 746, 776 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 695, 803, 2356, 2381, 2702 |
| Bse118I | RCCGGY | 1 cut(s) | 2338 |
| Bse1I | ACTGG | 8 cut(s) | 85, 523, 605, 1433, 2146, 2444, 2477, 2707 |
| Bse3DI | GCAATG | 3 cut(s) | 2180, 2342, 3196 |
| BseBI | CCWGG | 3 cut(s) | 870, 947, 1477 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 695, 803, 2356, 2381, 2702 |
| BseMI | GCAATG | 3 cut(s) | 2180, 2342, 3196 |
| BseMII | CTCAG | 5 cut(s) | 786, 1012, 2424, 2975, 3304 |
| BseNI | ACTGG | 8 cut(s) | 85, 523, 605, 1433, 2146, 2444, 2477, 2707 |
| BseSI | GKGCMC | 2 cut(s) | 538, 946 |
| BseXI | GCAGC | 9 cut(s) | 300, 711, 962, 1237, 1459, 1609, 2202, 2244, 3215 |
| BsgI | GTGCAG | 1 cut(s) | 299 |
| Bsh1236I | CGCG | 1 cut(s) | 2682 |
| BshFI | GGCC | 3 cut(s) | 536, 2036, 2951 |
| BshNI | GGYRCC | 1 cut(s) | 3222 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1407, 2605, 2664 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2302 |
| BsiSI | CCGG | 3 cut(s) | 195, 2303, 2339 |
| BslFI | GGGAC | 2 cut(s) | 2087, 2465 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 695, 803, 2356, 2381, 2702 |
| BsmAI | GTCTC | 2 cut(s) | 48, 2383 |
| BsmFI | GGGAC | 2 cut(s) | 2087, 2465 |
| BsmI | GAATGC | 1 cut(s) | 2411 |
| BsnI | GGCC | 3 cut(s) | 536, 2036, 2951 |
| Bso31I | GGTCTC | 1 cut(s) | 2383 |
| BsoBI | CYCGRG | 1 cut(s) | 2302 |
| Bsp120I | GGGCCC | 1 cut(s) | 534 |
| Bsp1286I | GDGCHC | 5 cut(s) | 538, 946, 1407, 2605, 2664 |
| Bsp19I | CCATGG | 4 cut(s) | 144, 2185, 2880, 3299 |
| BspACI | CCGC | 7 cut(s) | 220, 1122, 2080, 2375, 2680, 3023, 3180 |
| BspANI | GGCC | 3 cut(s) | 536, 2036, 2951 |
| BspCNI | CTCAG | 5 cut(s) | 785, 1011, 2423, 2976, 3303 |
| BspFNI | CGCG | 1 cut(s) | 2682 |
| BspHI | TCATGA | 3 cut(s) | 2401, 2524, 3142 |
| BspLI | GGNNCC | 6 cut(s) | 535, 536, 537, 2453, 2454, 3224 |
| BspMAI | CTGCAG | 1 cut(s) | 1255 |
| BspPI | GGATC | 5 cut(s) | 902, 1706, 1919, 2529, 2597 |
| BspQI | GCTCTTC | 1 cut(s) | 1504 |
| BspT107I | GGYRCC | 1 cut(s) | 3222 |
| BspTNI | GGTCTC | 1 cut(s) | 2383 |
| BsrDI | GCAATG | 3 cut(s) | 2180, 2342, 3196 |
| BsrFI | RCCGGY | 1 cut(s) | 2338 |
| BsrI | ACTGG | 8 cut(s) | 85, 523, 605, 1433, 2146, 2444, 2477, 2707 |
| BssAI | RCCGGY | 1 cut(s) | 2338 |
| BssT1I | CCWWGG | 7 cut(s) | 144, 802, 846, 1503, 2185, 2880, 3299 |
| Bst2UI | CCWGG | 3 cut(s) | 870, 947, 1477 |
| Bst6I | CTCTTC | 1 cut(s) | 1504 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 170, 1469 |
| BstC8I | GCNNGC | 7 cut(s) | 1031, 1050, 1248, 2195, 2340, 2664, 2708 |
| BstDEI | CTNAG | 8 cut(s) | 674, 772, 998, 2321, 2410, 2984, 3032, 3290 |
| BstDSI | CCRYGG | 4 cut(s) | 144, 2185, 2880, 3299 |
| BstFNI | CGCG | 1 cut(s) | 2682 |
| BstHHI | GCGC | 2 cut(s) | 1227, 2684 |
| BstMAI | GTCTC | 2 cut(s) | 48, 2383 |
| BstNI | CCWGG | 3 cut(s) | 870, 947, 1477 |
| BstNSI | RCATGY | 5 cut(s) | 164, 268, 1029, 1472, 1753 |
| BstSCI | CCNGG | 5 cut(s) | 868, 945, 1475, 2301, 2302 |
| BstSFI | CTRYAG | 2 cut(s) | 1251, 2685 |
| BstSLI | GKGCMC | 2 cut(s) | 538, 946 |
| BstUI | CGCG | 1 cut(s) | 2682 |
| BstV1I | GCAGC | 9 cut(s) | 300, 711, 962, 1237, 1459, 1609, 2202, 2244, 3215 |
| BstV2I | GAAGAC | 3 cut(s) | 103, 1660, 3125 |
| BstX2I | RGATCY | 2 cut(s) | 775, 2114 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 122, 530, 678, 2887 |
| BstYI | RGATCY | 2 cut(s) | 775, 2114 |
| BsuI | GTATCC | 2 cut(s) | 1173, 1281 |
| BsuRI | GGCC | 3 cut(s) | 536, 2036, 2951 |
| BtgI | CCRYGG | 4 cut(s) | 144, 2185, 2880, 3299 |
| BtrI | CACGTC | 1 cut(s) | 2311 |
| BtsI | GCAGTG | 1 cut(s) | 60 |
| BtsIMutI | CAGTG | 3 cut(s) | 60, 357, 2233 |
| Cac8I | GCNNGC | 7 cut(s) | 1031, 1050, 1248, 2195, 2340, 2664, 2708 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1428 |
| CciI | TCATGA | 3 cut(s) | 2401, 2524, 3142 |
| CfoI | GCGC | 2 cut(s) | 1227, 2684 |
| Cfr10I | RCCGGY | 1 cut(s) | 2338 |
| Cfr13I | GGNCC | 5 cut(s) | 534, 535, 1124, 2452, 2648 |
| Cfr9I | CCCGGG | 1 cut(s) | 2302 |
| CseI | GACGC | 1 cut(s) | 782 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2052, 2087 |
| DdeI | CTNAG | 8 cut(s) | 674, 772, 998, 2321, 2410, 2984, 3032, 3290 |
| DraI | TTTAAA | 2 cut(s) | 1986, 3085 |
| DraIII | CACNNNGTG | 1 cut(s) | 2356 |
| EaeI | YGGCCR | 1 cut(s) | 2034 |
| Eam1104I | CTCTTC | 1 cut(s) | 1504 |
| EarI | CTCTTC | 1 cut(s) | 1504 |
| Ecl136II | GAGCTC | 2 cut(s) | 1405, 2662 |
| Eco130I | CCWWGG | 7 cut(s) | 144, 802, 846, 1503, 2185, 2880, 3299 |
| Eco24I | GRGCYC | 3 cut(s) | 538, 1407, 2664 |
| Eco31I | GGTCTC | 1 cut(s) | 2383 |
| Eco47I | GGWCC | 3 cut(s) | 1124, 2452, 2648 |
| Eco53kI | GAGCTC | 2 cut(s) | 1405, 2662 |
| Eco57I | CTGAAG | 1 cut(s) | 2209 |
| Eco88I | CYCGRG | 1 cut(s) | 2302 |
| EcoICRI | GAGCTC | 2 cut(s) | 1405, 2662 |
| EcoO109I | RGGNCCY | 3 cut(s) | 534, 535, 2452 |
| EcoRI | GAATTC | 3 cut(s) | 229, 1035, 2753 |
| EcoRII | CCWGG | 3 cut(s) | 868, 945, 1475 |
| EcoT14I | CCWWGG | 7 cut(s) | 144, 802, 846, 1503, 2185, 2880, 3299 |
| EcoT22I | ATGCAT | 1 cut(s) | 3199 |
| EcoT38I | GRGCYC | 3 cut(s) | 538, 1407, 2664 |
| ErhI | CCWWGG | 7 cut(s) | 144, 802, 846, 1503, 2185, 2880, 3299 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 302, 334, 1568, 1600 |
| FaqI | GGGAC | 2 cut(s) | 2087, 2465 |
| FauI | CCCGC | 2 cut(s) | 2382, 2687 |
| FauNDI | CATATG | 1 cut(s) | 3199 |
| FblI | GTMKAC | 3 cut(s) | 1083, 2688, 2937 |
| FriOI | GRGCYC | 3 cut(s) | 538, 1407, 2664 |
| GlaI | GCGC | 2 cut(s) | 1226, 2683 |
| GsuI | CTGGAG | 1 cut(s) | 30 |
| HaeIII | GGCC | 3 cut(s) | 536, 2036, 2951 |
| HapII | CCGG | 3 cut(s) | 195, 2303, 2339 |
| HgaI | GACGC | 1 cut(s) | 782 |
| HhaI | GCGC | 2 cut(s) | 1227, 2684 |
| Hin6I | GCGC | 2 cut(s) | 1225, 2682 |
| HinP1I | GCGC | 2 cut(s) | 1225, 2682 |
| HincII | GTYRAC | 1 cut(s) | 500 |
| HindII | GTYRAC | 1 cut(s) | 500 |
| HindIII | AAGCTT | 4 cut(s) | 585, 2066, 2765, 2807 |
| HinfI | GANTC | 7 cut(s) | 428, 682, 770, 1275, 1900, 2552, 2690 |
| HpaII | CCGG | 3 cut(s) | 195, 2303, 2339 |
| HphI | GGTGA | 9 cut(s) | 391, 1334, 1448, 1535, 2318, 2429, 2441, 2833, 2869 |
| Hpy99I | CGWCG | 1 cut(s) | 2515 |
| HpyAV | CCTTC | 6 cut(s) | 100, 524, 722, 1850, 2884, 2911 |
| HpyCH4IV | ACGT | 2 cut(s) | 1869, 2310 |
| HpyF3I | CTNAG | 8 cut(s) | 674, 772, 998, 2321, 2410, 2984, 3032, 3290 |
| HpySE526I | ACGT | 2 cut(s) | 1869, 2310 |
| HspAI | GCGC | 2 cut(s) | 1225, 2682 |
| KflI | GGGWCCC | 1 cut(s) | 2452 |
| KpnI | GGTACC | 1 cut(s) | 3226 |
| KroI | GCCGGC | 1 cut(s) | 2338 |
| KroNI | GCCGGC | 1 cut(s) | 2340 |
| LguI | GCTCTTC | 1 cut(s) | 1504 |
| LmnI | GCTCC | 3 cut(s) | 664, 1797, 3280 |
| Lsp1109I | GCAGC | 9 cut(s) | 300, 711, 962, 1237, 1459, 1609, 2202, 2244, 3215 |
| LweI | GCATC | 8 cut(s) | 314, 874, 1212, 2008, 2031, 3018, 3184, 3221 |
| MaeII | ACGT | 2 cut(s) | 1869, 2310 |
| MfeI | CAATTG | 1 cut(s) | 1904 |
| MflI | RGATCY | 2 cut(s) | 775, 2114 |
| MhlI | GDGCHC | 5 cut(s) | 538, 946, 1407, 2605, 2664 |
| MlsI | TGGCCA | 1 cut(s) | 2036 |
| MluNI | TGGCCA | 1 cut(s) | 2036 |
| MlyI | GAGTC | 3 cut(s) | 764, 1284, 2684 |
| MmeI | TCCRAC | 4 cut(s) | 360, 1739, 1791, 2839 |
| Mox20I | TGGCCA | 1 cut(s) | 2036 |
| Mph1103I | ATGCAT | 1 cut(s) | 3199 |
| MroNI | GCCGGC | 1 cut(s) | 2338 |
| MroXI | GAANNNNTTC | 5 cut(s) | 110, 233, 1542, 2028, 2810 |
| MscI | TGGCCA | 1 cut(s) | 2036 |
| MslI | CAYNNNNRTG | 6 cut(s) | 120, 676, 861, 2304, 2400, 2885 |
| Msp20I | TGGCCA | 1 cut(s) | 2036 |
| MspA1I | CMGCKG | 1 cut(s) | 3180 |
| MspI | CCGG | 3 cut(s) | 195, 2303, 2339 |
| MspR9I | CCNGG | 5 cut(s) | 870, 947, 1477, 2303, 2304 |
| MunI | CAATTG | 1 cut(s) | 1904 |
| Mva1269I | GAATGC | 1 cut(s) | 2411 |
| MvaI | CCWGG | 3 cut(s) | 870, 947, 1477 |
| MvnI | CGCG | 1 cut(s) | 2682 |
| NaeI | GCCGGC | 1 cut(s) | 2340 |
| NciI | CCSGG | 2 cut(s) | 2303, 2304 |
| NcoI | CCATGG | 4 cut(s) | 144, 2185, 2880, 3299 |
| NdeI | CATATG | 1 cut(s) | 3199 |
| NgoMIV | GCCGGC | 1 cut(s) | 2338 |
| NlaIV | GGNNCC | 6 cut(s) | 535, 536, 537, 2453, 2454, 3224 |
| NmeAIII | GCCGAG | 1 cut(s) | 1208 |
| NmuCI | GTSAC | 6 cut(s) | 55, 260, 767, 2243, 2306, 3098 |
| NsiI | ATGCAT | 1 cut(s) | 3199 |
| NspI | RCATGY | 5 cut(s) | 164, 268, 1029, 1472, 1753 |
| OliI | CACNNNNGTG | 2 cut(s) | 676, 2304 |
| PagI | TCATGA | 3 cut(s) | 2401, 2524, 3142 |
| PciI | ACATGT | 1 cut(s) | 264 |
| PciSI | GCTCTTC | 1 cut(s) | 1504 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1153 |
| PctI | GAATGC | 1 cut(s) | 2411 |
| PdiI | GCCGGC | 1 cut(s) | 2340 |
| PdmI | GAANNNNTTC | 5 cut(s) | 110, 233, 1542, 2028, 2810 |
| PfeI | GAWTC | 4 cut(s) | 428, 682, 1900, 2552 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2356 |
| PfoI | TCCNGGA | 1 cut(s) | 868 |
| PleI | GAGTC | 3 cut(s) | 764, 1283, 2684 |
| PpsI | GAGTC | 3 cut(s) | 764, 1283, 2684 |
| PpuMI | RGGWCCY | 1 cut(s) | 2452 |
| PscI | ACATGT | 1 cut(s) | 264 |
| PsiI | TTATAA | 1 cut(s) | 717 |
| Psp124BI | GAGCTC | 2 cut(s) | 1407, 2664 |
| Psp5II | RGGWCCY | 1 cut(s) | 2452 |
| Psp6I | CCWGG | 3 cut(s) | 868, 945, 1475 |
| PspGI | CCWGG | 3 cut(s) | 868, 945, 1475 |
| PspN4I | GGNNCC | 6 cut(s) | 535, 536, 537, 2453, 2454, 3224 |
| PspOMI | GGGCCC | 1 cut(s) | 534 |
| PspPI | GGNCC | 5 cut(s) | 534, 535, 1124, 2452, 2648 |
| PspPPI | RGGWCCY | 1 cut(s) | 2452 |
| PstI | CTGCAG | 1 cut(s) | 1255 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1428 |
| PsuI | RGATCY | 2 cut(s) | 775, 2114 |
| RseI | CAYNNNNRTG | 6 cut(s) | 120, 676, 861, 2304, 2400, 2885 |
| SacI | GAGCTC | 2 cut(s) | 1407, 2664 |
| SapI | GCTCTTC | 1 cut(s) | 1504 |
| Sau96I | GGNCC | 5 cut(s) | 534, 535, 1124, 2452, 2648 |
| SchI | GAGTC | 3 cut(s) | 764, 1284, 2684 |
| ScrFI | CCNGG | 5 cut(s) | 870, 947, 1477, 2303, 2304 |
| SduI | GDGCHC | 5 cut(s) | 538, 946, 1407, 2605, 2664 |
| SfaNI | GCATC | 8 cut(s) | 314, 874, 1212, 2008, 2031, 3018, 3184, 3221 |
| SfcI | CTRYAG | 2 cut(s) | 1251, 2685 |
| SinI | GGWCC | 3 cut(s) | 1124, 2452, 2648 |
| SmaI | CCCGGG | 1 cut(s) | 2304 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 120, 676, 861, 2304, 2400, 2885 |
| SsiI | CCGC | 7 cut(s) | 220, 1122, 2080, 2375, 2680, 3023, 3180 |
| SspI | AATATT | 3 cut(s) | 3002, 3094, 3163 |
| SstI | GAGCTC | 2 cut(s) | 1407, 2664 |
| StyD4I | CCNGG | 5 cut(s) | 868, 945, 1475, 2301, 2302 |
| StyI | CCWWGG | 7 cut(s) | 144, 802, 846, 1503, 2185, 2880, 3299 |
| TaiI | ACGT | 2 cut(s) | 1872, 2313 |
| TaqI | TCGA | 7 cut(s) | 579, 607, 1189, 1678, 1825, 2789, 3066 |
| TaqII | GACCGA | 1 cut(s) | 1654 |
| TatI | WGTACW | 1 cut(s) | 1008 |
| TauI | GCSGC | 1 cut(s) | 3183 |
| TfiI | GAWTC | 4 cut(s) | 428, 682, 1900, 2552 |
| TscAI | CASTG | 3 cut(s) | 60, 357, 2233 |
| TseFI | GTSAC | 6 cut(s) | 55, 260, 767, 2243, 2306, 3098 |
| TseI | GCWGC | 9 cut(s) | 313, 699, 975, 1250, 1472, 1622, 2190, 2232, 3203 |
| Tsp45I | GTSAC | 6 cut(s) | 55, 260, 767, 2243, 2306, 3098 |
| TspGWI | ACGGA | 1 cut(s) | 3137 |
| TspMI | CCCGGG | 1 cut(s) | 2302 |
| TspRI | CASTG | 3 cut(s) | 60, 357, 2233 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2356 |
| VpaK11BI | GGWCC | 3 cut(s) | 1124, 2452, 2648 |
| XapI | RAATTY | 8 cut(s) | 229, 383, 841, 1035, 1331, 1674, 2515, 2753 |
| XceI | RCATGY | 5 cut(s) | 164, 268, 1029, 1472, 1753 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1679, 2225 |
| XmaI | CCCGGG | 1 cut(s) | 2302 |
| XmaJI | CCTAGG | 1 cut(s) | 802 |
| XmiI | GTMKAC | 3 cut(s) | 1083, 2688, 2937 |
| XmnI | GAANNNNTTC | 5 cut(s) | 110, 233, 1542, 2028, 2810 |
| Zsp2I | ATGCAT | 1 cut(s) | 3199 |