Prupe.4G086600_v2.0.a1

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
4264517 .. 4266103
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G086600.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 1407 bp
ATGGCCAGCCTCGTATTCGAGCATCCACAAGAAAACAGTACTGCCCACATGACCACTAGCCCTCTAGACCCTGAGGAATTCAGAAGGCAAGGCCACATGGTCATAGACTTCATTGCAGATTATTACAAAACAATTGAAAAATACCCAGTTCTTACCCAAGTCCAACCGGGCTATCTCAAAAAACGCTTGCCAGAATCTGCCCCATACGACCCTGAACCTATTGAAACCATCCTCCAAGACGTTCAGGACCACATTATCCCTGGCCTAACACATTGGCAAAGCCCTAACCACTTTGCCTACTTCCCTGCAACTATCAGCACCGCAGGGTTCCTCGGCGAAATGCTCTCCACTGGTTTCAATGTTGTGGGGTTCAATTGGATTGCATCCCCAGCTGCAACTGAGCTCGAAACCATTGTCATGGATTGGCTTGGAGACATGCTCAAACTTCCCAAGTCTTTCCTTTTCTCTGGCAACGGCGGCGGTGTATTGCAAGGCACTACTTGTGAGGCCATTGTTTGTACCATGGCAGCTGCCAGGGATCAAATGCTAAGCCAAATTGGTAGAGAGAATATTGGGAAGCTAGTTGTGTATGGATCAGACCAAACACATAGCACGCTTCAAAAAGCTTCTCAAATTGTTGGGATTCACCCAAAGAATTTCAGGGCCATAGAGACCATAACATCAACATCATTTGCACTATCACCTGAGGTGGCAAAAGAACATGGCATGTGGGTTCATGTGGACGCTGCATATGCTGGAAGTGCTTGCATTTGTCCAGAGTTTCAATACTTTATCGATGGCGTTGAGGGTGCAGATTCATTCAGTCTCAATGCGCACAAATGGTTCTTCACAACCCTCGACTGTTGTTGCCTCTGGGTTAAGAATCCAAGTGCTTCGGTGAGCTCACTTTCGACGAATCCGGAGTTTCTGAGGAACAAGGCCACGGATTCGAAGCAAGTGGTGGACTACAAGGACTGGCAAATAGCCTTGAGCAGGAGGTTCAGGGCCATCAAATTATGGCTTGTGCTTAGAAGCTATGGTGTGGGAACTTTCTTAGGGAGCCATGTGAAAATGGCCAAGATTTTTGAAGGGCTTGTGGGGATGGACAAAAGGTTTGAGATTGTGGCCCCTAGGCATTTCTCTTTGGTCTGTTTTAGGGTTTCTCCATCAGCAATTAGCAAGGCTAATCCAAGCCTAAGTGATCATGATAATGTTAACGAGGTGAATAGCAAGTTGCTGGAGGCGATTAATGGGTCGGGTCTGGTGTACATGGGCCATGCTGTGGTTGGAGGGATGTATGTGTTAAGTTGCGCAATTGGAGCAAGTCTCACTGAGGAAAAGCATAGAGCCATGGCTTGGAATGTGGTGCAAGAACATGCAGATGCCATCCTCGCCACCATGGATTGA

Protein Analysis

469

Amino Acids

51.67

Weight (kDa)

5.86

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 834, 1312
AccB7I CCANNNNNTGG 2 cut(s) 1282, 1356
AccIII TCCGGA 1 cut(s) 919
AciI CCGC 3 cut(s) 321, 477, 480
AclWI GGATC 2 cut(s) 546, 601
AcoI YGGCCR 2 cut(s) 3, 1074
AcsI RAATTY 2 cut(s) 77, 655
AfaI GTAC 3 cut(s) 40, 520, 1268
AfiI CCNNNNNNNGG 3 cut(s) 993, 1282, 1356
AgsI TTSAA 7 cut(s) 137, 224, 358, 373, 620, 785, 1088
AjnI CCWGG 2 cut(s) 259, 533
AluBI AGCT 7 cut(s) 392, 403, 530, 580, 626, 903, 1035
AluI AGCT 7 cut(s) 392, 403, 530, 580, 626, 903, 1035
Alw21I GWGCWC 2 cut(s) 405, 905
Alw26I GTCTC 4 cut(s) 426, 665, 830, 1331
AlwI GGATC 2 cut(s) 546, 601
AlwNI CAGNNNCTG 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 919
ApeKI GCWGC 4 cut(s) 392, 527, 530, 746
ApoI RAATTY 2 cut(s) 77, 655
ArsI GACNNNNNNTTYG 4 cut(s) 399, 431, 1097, 1129
AseI ATTAAT 1 cut(s) 1248
AspA2I CCTAGG 1 cut(s) 1130
AspLEI GCGC 2 cut(s) 835, 1313
AspS9I GGNCC 5 cut(s) 247, 663, 1005, 1126, 1273
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 4 cut(s) 638, 693, 910, 1234
AsuII TTCGAA 1 cut(s) 950
AvaII GGWCC 1 cut(s) 247
AvrII CCTAGG 1 cut(s) 1130
AxyI CCTNAGG 2 cut(s) 72, 705
BalI TGGCCA 2 cut(s) 5, 1076
BanII GRGCYC 2 cut(s) 405, 905
Bbv12I GWGCWC 2 cut(s) 405, 905
BbvI GCAGC 4 cut(s) 379, 517, 539, 733
BccI CCATC 6 cut(s) 236, 791, 1016, 1096, 1174, 1394
BceAI ACGGC 1 cut(s) 490
BciT130I CCWGG 2 cut(s) 261, 535
BclI TGATCA 1 cut(s) 1201
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 4 cut(s) 426, 665, 830, 1331
BfaI CTAG 4 cut(s) 57, 65, 581, 1131
BisI GCNGC 5 cut(s) 393, 478, 528, 531, 747
BlnI CCTAGG 1 cut(s) 1130
BlpI GCTNAGC 1 cut(s) 548
BlsI GCNGC 5 cut(s) 394, 479, 529, 532, 748
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 3 cut(s) 168, 261, 535
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 5 cut(s) 247, 663, 1005, 1126, 1273
BmiI GGNNCC 3 cut(s) 329, 1061, 1128
BmrFI CCNGG 3 cut(s) 168, 261, 535
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 3 cut(s) 31, 392, 1372
BmuI ACTGGG 1 cut(s) 140
BplI GAGNNNNNCTC 4 cut(s) 423, 455, 1311, 1343
BpmI CTGGAG 1 cut(s) 1259
Bpu1102I GCTNAGC 1 cut(s) 548
Bpu14I TTCGAA 1 cut(s) 950
BpuEI CTTGAG 1 cut(s) 1009
BpuMI CCSGG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 795
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 8 cut(s) 259, 331, 522, 534, 942, 1130, 1350, 1398
BsaWI WCCGGW 1 cut(s) 919
Bsc4I CCNNNNNNNGG 3 cut(s) 993, 1282, 1356
Bse1I ACTGG 3 cut(s) 146, 355, 980
Bse21I CCTNAGG 2 cut(s) 72, 705
Bse3DI GCAATG 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 919
BseBI CCWGG 2 cut(s) 261, 535
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 8 cut(s) 259, 331, 522, 534, 942, 1130, 1350, 1398
BseGI GGATG 6 cut(s) 22, 228, 383, 1107, 1299, 1386
BseLI CCNNNNNNNGG 3 cut(s) 993, 1282, 1356
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 5 cut(s) 63, 390, 696, 920, 1323
BseNI ACTGG 3 cut(s) 146, 355, 980
BseXI GCAGC 4 cut(s) 379, 517, 539, 733
BseYI CCCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 831
BshVI ATCGAT 1 cut(s) 795
BsiHKAI GWGCWC 2 cut(s) 405, 905
BsiSI CCGG 2 cut(s) 167, 920
BslI CCNNNNNNNGG 3 cut(s) 993, 1282, 1356
BsmAI GTCTC 4 cut(s) 426, 665, 830, 1331
Bso31I GGTCTC 1 cut(s) 665
Bsp119I TTCGAA 1 cut(s) 950
Bsp1286I GDGCHC 2 cut(s) 405, 905
Bsp13I TCCGGA 1 cut(s) 919
Bsp1407I TGTACA 1 cut(s) 1266
Bsp143I GATC 3 cut(s) 538, 593, 1201
Bsp1720I GCTNAGC 1 cut(s) 548
Bsp19I CCATGG 3 cut(s) 522, 1350, 1398
BspACI CCGC 3 cut(s) 321, 477, 480
BspCNI CTCAG 5 cut(s) 64, 391, 697, 921, 1324
BspDI ATCGAT 1 cut(s) 795
BspEI TCCGGA 1 cut(s) 919
BspHI TCATGA 1 cut(s) 1204
BspLI GGNNCC 3 cut(s) 329, 1061, 1128
BspPI GGATC 2 cut(s) 546, 601
BspT104I TTCGAA 1 cut(s) 950
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 111
BsrGI TGTACA 1 cut(s) 1266
BsrI ACTGG 3 cut(s) 146, 355, 980
BssECI CCNNGG 8 cut(s) 259, 331, 522, 534, 942, 1130, 1350, 1398
BssMI GATC 3 cut(s) 538, 593, 1201
BssT1I CCWWGG 4 cut(s) 522, 1130, 1350, 1398
Bst2UI CCWGG 2 cut(s) 261, 535
Bst4CI ACNGT 2 cut(s) 38, 863
BstAUI TGTACA 1 cut(s) 1266
BstBI TTCGAA 1 cut(s) 950
BstC8I GCNNGC 4 cut(s) 7, 188, 614, 766
BstDEI CTNAG 9 cut(s) 72, 399, 548, 705, 929, 1028, 1054, 1196, 1332
BstDSI CCRYGG 4 cut(s) 522, 942, 1350, 1398
BstENI CCTNNNNNAGG 1 cut(s) 991
BstF5I GGATG 6 cut(s) 22, 228, 383, 1107, 1299, 1386
BstHHI GCGC 2 cut(s) 835, 1313
BstKTI GATC 3 cut(s) 541, 596, 1204
BstMAI GTCTC 4 cut(s) 426, 665, 830, 1331
BstMBI GATC 3 cut(s) 538, 593, 1201
BstMWI GCNNNNNNNGC 6 cut(s) 389, 477, 752, 761, 1319, 1391
BstNI CCWGG 2 cut(s) 261, 535
BstNSI RCATGY 3 cut(s) 439, 730, 1379
BstSCI CCNGG 3 cut(s) 166, 259, 533
BstV1I GCAGC 4 cut(s) 379, 517, 539, 733
BstXI CCANNNNNNTGG 1 cut(s) 418
Bsu15I ATCGAT 1 cut(s) 795
Bsu36I CCTNAGG 2 cut(s) 72, 705
BsuTUI ATCGAT 1 cut(s) 795
BtgI CCRYGG 4 cut(s) 522, 942, 1350, 1398
BtsCI GGATG 6 cut(s) 22, 228, 383, 1107, 1299, 1386
BtsIMutI CAGTG 2 cut(s) 348, 1329
Cac8I GCNNGC 4 cut(s) 7, 188, 614, 766
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 1204
CfoI GCGC 2 cut(s) 835, 1313
Cfr13I GGNCC 5 cut(s) 247, 663, 1005, 1126, 1273
ClaI ATCGAT 1 cut(s) 795
CseI GACGC 1 cut(s) 752
Csp6I GTAC 3 cut(s) 39, 519, 1267
CviQI GTAC 3 cut(s) 39, 519, 1267
DdeI CTNAG 9 cut(s) 72, 399, 548, 705, 929, 1028, 1054, 1196, 1332
DpnI GATC 3 cut(s) 540, 595, 1203
DpnII GATC 3 cut(s) 538, 593, 1201
EaeI YGGCCR 2 cut(s) 3, 1074
Ecl136II GAGCTC 2 cut(s) 403, 903
Eco130I CCWWGG 4 cut(s) 522, 1130, 1350, 1398
Eco24I GRGCYC 2 cut(s) 405, 905
Eco31I GGTCTC 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 2 cut(s) 403, 903
Eco81I CCTNAGG 2 cut(s) 72, 705
EcoICRI GAGCTC 2 cut(s) 403, 903
EcoNI CCTNNNNNAGG 1 cut(s) 991
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 259, 533
EcoT14I CCWWGG 4 cut(s) 522, 1130, 1350, 1398
EcoT38I GRGCYC 2 cut(s) 405, 905
ErhI CCWWGG 4 cut(s) 522, 1130, 1350, 1398
FauNDI CATATG 1 cut(s) 751
FbaI TGATCA 1 cut(s) 1201
Fnu4HI GCNGC 5 cut(s) 393, 478, 528, 531, 747
FokI GGATG 6 cut(s) 9, 215, 370, 1114, 1306, 1373
FriOI GRGCYC 2 cut(s) 405, 905
Fsp4HI GCNGC 5 cut(s) 393, 478, 528, 531, 747
FspAI RTGCGCAY 1 cut(s) 834
FspBI CTAG 4 cut(s) 57, 65, 581, 1131
FspI TGCGCA 2 cut(s) 834, 1312
GlaI GCGC 2 cut(s) 834, 1312
GluI GCNGC 5 cut(s) 393, 478, 528, 531, 747
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 1 cut(s) 1259
HapII CCGG 2 cut(s) 167, 920
HgaI GACGC 1 cut(s) 752
HhaI GCGC 2 cut(s) 835, 1313
Hin6I GCGC 2 cut(s) 833, 1311
HinP1I GCGC 2 cut(s) 833, 1311
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 6 cut(s) 194, 643, 815, 883, 916, 947
HpaI GTTAAC 1 cut(s) 1216
HpaII CCGG 2 cut(s) 167, 920
HphI GGTGA 4 cut(s) 638, 693, 910, 1234
Hpy166II GTNNAC 4 cut(s) 742, 964, 1216, 1267
Hpy188I TCNGA 3 cut(s) 83, 598, 930
Hpy188III TCNNGA 5 cut(s) 65, 245, 776, 920, 1205
Hpy8I GTNNAC 4 cut(s) 742, 964, 1216, 1267
Hpy99I CGWCG 1 cut(s) 916
HpyAV CCTTC 2 cut(s) 78, 1082
HpyCH4III ACNGT 2 cut(s) 38, 863
HpyCH4IV ACGT 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 6 cut(s) 389, 477, 752, 761, 1319, 1391
HpyF3I CTNAG 9 cut(s) 72, 399, 548, 705, 929, 1028, 1054, 1196, 1332
HpySE526I ACGT 1 cut(s) 240
HspAI GCGC 2 cut(s) 833, 1311
Kpn2I TCCGGA 1 cut(s) 919
Ksp22I TGATCA 1 cut(s) 1201
KspAI GTTAAC 1 cut(s) 1216
Kzo9I GATC 3 cut(s) 538, 593, 1201
LmnI GCTCC 2 cut(s) 1059, 1319
Lsp1109I GCAGC 4 cut(s) 379, 517, 539, 733
LweI GCATC 3 cut(s) 31, 392, 1372
MaeI CTAG 4 cut(s) 57, 65, 581, 1131
MaeII ACGT 1 cut(s) 240
MalI GATC 3 cut(s) 540, 595, 1203
MboI GATC 3 cut(s) 538, 593, 1201
MboII GAAGA 1 cut(s) 838
MfeI CAATTG 3 cut(s) 132, 373, 1314
MhlI GDGCHC 2 cut(s) 405, 905
MlsI TGGCCA 2 cut(s) 5, 1076
MluCI AATT 9 cut(s) 77, 132, 373, 555, 633, 655, 1013, 1173, 1314
MluNI TGGCCA 2 cut(s) 5, 1076
MmeI TCCRAC 2 cut(s) 187, 1267
Mox20I TGGCCA 2 cut(s) 5, 1076
MroI TCCGGA 1 cut(s) 919
MscI TGGCCA 2 cut(s) 5, 1076
MseI TTAA 4 cut(s) 879, 1215, 1248, 1304
MslI CAYNNNNRTG 3 cut(s) 416, 1209, 1380
Msp20I TGGCCA 2 cut(s) 5, 1076
MspA1I CMGCKG 2 cut(s) 392, 530
MspI CCGG 2 cut(s) 167, 920
MspR9I CCNGG 3 cut(s) 168, 261, 535
MunI CAATTG 3 cut(s) 132, 373, 1314
MvaI CCWGG 2 cut(s) 261, 535
MwoI GCNNNNNNNGC 6 cut(s) 389, 477, 752, 761, 1319, 1391
NciI CCSGG 1 cut(s) 168
NcoI CCATGG 3 cut(s) 522, 1350, 1398
NdeI CATATG 1 cut(s) 751
NdeII GATC 3 cut(s) 538, 593, 1201
NlaIV GGNNCC 3 cut(s) 329, 1061, 1128
NmeAIII GCCGAG 1 cut(s) 312
NsbI TGCGCA 2 cut(s) 834, 1312
NspI RCATGY 3 cut(s) 439, 730, 1379
NspV TTCGAA 1 cut(s) 950
PagI TCATGA 1 cut(s) 1204
PfeI GAWTC 6 cut(s) 194, 643, 815, 883, 916, 947
PflMI CCANNNNNTGG 2 cut(s) 1282, 1356
PkrI GCNGC 5 cut(s) 394, 479, 529, 532, 748
PshBI ATTAAT 1 cut(s) 1248
Psp124BI GAGCTC 2 cut(s) 405, 905
Psp6I CCWGG 2 cut(s) 259, 533
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 2 cut(s) 259, 533
PspN4I GGNNCC 3 cut(s) 329, 1061, 1128
PspPI GGNCC 5 cut(s) 247, 663, 1005, 1126, 1273
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 2 cut(s) 392, 530
RsaI GTAC 3 cut(s) 40, 520, 1268
RsaNI GTAC 3 cut(s) 39, 519, 1267
RseI CAYNNNNRTG 3 cut(s) 416, 1209, 1380
SacI GAGCTC 2 cut(s) 405, 905
SaqAI TTAA 4 cut(s) 879, 1215, 1248, 1304
SatI GCNGC 5 cut(s) 393, 478, 528, 531, 747
Sau3AI GATC 3 cut(s) 538, 593, 1201
Sau96I GGNCC 5 cut(s) 247, 663, 1005, 1126, 1273
ScaI AGTACT 1 cut(s) 40
ScrFI CCNGG 3 cut(s) 168, 261, 535
SduI GDGCHC 2 cut(s) 405, 905
SfaNI GCATC 3 cut(s) 31, 392, 1372
SfuI TTCGAA 1 cut(s) 950
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 3 cut(s) 416, 1209, 1380
SmlI CTYRAG 1 cut(s) 988
SmoI CTYRAG 1 cut(s) 988
Sse9I AATT 9 cut(s) 77, 132, 373, 555, 633, 655, 1013, 1173, 1314
SsiI CCGC 3 cut(s) 321, 477, 480
SspI AATATT 1 cut(s) 571
SspMI CTAG 4 cut(s) 57, 65, 581, 1131
SstI GAGCTC 2 cut(s) 405, 905
StyD4I CCNGG 3 cut(s) 166, 259, 533
StyI CCWWGG 4 cut(s) 522, 1130, 1350, 1398
TaaI ACNGT 2 cut(s) 38, 863
TaiI ACGT 1 cut(s) 243
TaqI TCGA 6 cut(s) 18, 405, 795, 858, 911, 950
TasI AATT 9 cut(s) 77, 132, 373, 555, 633, 655, 1013, 1173, 1314
TatI WGTACW 2 cut(s) 38, 1266
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 6 cut(s) 194, 643, 815, 883, 916, 947
Tru1I TTAA 4 cut(s) 879, 1215, 1248, 1304
Tru9I TTAA 4 cut(s) 879, 1215, 1248, 1304
TscAI CASTG 2 cut(s) 355, 1336
TseI GCWGC 4 cut(s) 392, 527, 530, 746
TspDTI ATGAA 3 cut(s) 100, 725, 807
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 2 cut(s) 355, 1336
Van91I CCANNNNNTGG 2 cut(s) 1282, 1356
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 1248
XagI CCTNNNNNAGG 1 cut(s) 991
XapI RAATTY 2 cut(s) 77, 655
XbaI TCTAGA 1 cut(s) 64
XceI RCATGY 3 cut(s) 439, 730, 1379
XcmI CCANNNNNNNNNTGG 2 cut(s) 257, 1283
XmaJI CCTAGG 1 cut(s) 1130
XspI CTAG 4 cut(s) 57, 65, 581, 1131
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.