Prupe.4G086900_v2.0.a1

Tyrosine dopa decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
4272926 .. 4275182
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G086900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1401 bp
ATGTCTGGCCCTCTGGACCTTGTGGAGTTCAGAAGACAAGGACACATGATGGTAGATTTCATTGCTGATTATTACCAAAAGATAGAGAAACACCCAGTTCTAAGCCAAGTCCAACCTGGCTATCTCAAAGAACGCTTGCCAGAATCTGCTCCATACAACCCTGAACCCATTGAAACCATCCTCCAAGATGTTCAAGATCACATTGTCCCTGGCCTTACACACTGGCAAAGCCCTAACCACTTTGCCTACTTCCCTGCAACTATCAGCACCGCAGGGTTCCTCGGCGAAATGCTCACCACTGGTTTCAATGTTGTGGGGTTCAATTGGATTGCATCCCCTGCTGCAACTGAGCTCGAAACCATTGTCATGGATTGGCTTGGAGATATGCTCAAACTTCCCACCTCTTTCCTCTTCTCTGGCAACGGGGGCGGTGTGTTGCAAGGCACTGCTTGTGAGGCCATTGTTTGTACCATGGCAGCCGCCAGGGATCAAATGCTAAGCCAAATTGGTAGAGAGAATATTGGGAAGCTAGTTGTGTATGGATCAGATCAAACACATAGCACGCTTCAAAAAGCCTCCCAAATTGTTGGGATTCACCCGAAGAATTTCAGGGCCATAGAGACCACAAAATCAACATCATTTGCACTTTCACCTGAGGTGCTAAAGTCGACTGTTTGTTCAGACATAGAAGCTGGGCTTGTCCCATTGTTTCTTTGTGCCACAATTGGAACAACTGCAGTAACAGCGTTTGATCCATTGGGGCCACTCTGCGACGTGGCAAAAGAACACGGCATGTGGGTTCATGTCGACGCGGCATATGCTGGAAGTGCCTGCATTTGTCCTGAGTTTCGACCTTTTATCGATGGCGTTGAGGAATTTACATTTCAACACAAATGGCTCTTCGCAAACCTCGACTGTTGTTGCCTCTGGGTTAAGAATCCAAGTGCTTTGGTAAGCTCACTTTCGACAAATCCGGAGTATCTGAGGAACAAGGCCACGGATTCGAAGCAAGTGGTGGACTACAAGGACTGGCAAATAGCTTTGAGCAGGAGGTTCAGGGCCATCAAACTATGGCTTCTTGTGGAAATGGACAAAAGGTTTGAGGTTGTGGTGCCTAGAAAGTTCTCTTTGGTGTGTTTTCGGGTTTCGCCATCAGCAATTAGTAAGGCTAATTATCCAACTACAAATTATGAAAAATGTGTAAACGAAGTGAATTGCAAGCTGCTAGAGGCGATCAATGGGTCGGGTCGGGTGTTCATGACCCATGCTGTGGTTGGAGGCATCTATGTGTTGCGGTGTGCAATTGGAACAACTCTGACTGAGGAAAAGCACGTATCCATGGCTTGGAAGGTGGTGCAAGAGCATGCAGATGCCGTTCTCCATCCACCATGTATTAATTAA

Protein Analysis

467

Amino Acids

51.59

Weight (kDa)

5.97

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1111
AccB7I CCANNNNNTGG 2 cut(s) 1270, 1344
AccI GTMKAC 2 cut(s) 668, 807
AccII CGCG 1 cut(s) 812
AccIII TCCGGA 1 cut(s) 973
AciI CCGC 5 cut(s) 270, 429, 480, 812, 1294
AclWI GGATC 3 cut(s) 495, 550, 746
AcsI RAATTY 2 cut(s) 604, 875
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 1270, 1344
AgsI TTSAA 6 cut(s) 173, 194, 307, 322, 569, 887
AjiI CACGTC 1 cut(s) 775
AjnI CCWGG 3 cut(s) 115, 208, 482
AluBI AGCT 6 cut(s) 352, 529, 692, 957, 1040, 1222
AluI AGCT 6 cut(s) 352, 529, 692, 957, 1040, 1222
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 3 cut(s) 495, 550, 746
AlwNI CAGNNNCTG 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 973
AoxI GGCC 7 cut(s) 7, 211, 456, 612, 761, 993, 1059
ApeKI GCWGC 3 cut(s) 341, 476, 1222
ApoI RAATTY 2 cut(s) 604, 875
ArsI GACNNNNNNTTYG 4 cut(s) 348, 380, 1082, 1114
AseI ATTAAT 1 cut(s) 1395
Asp700I GAANNNNTTC 1 cut(s) 605
AspS9I GGNCC 5 cut(s) 8, 16, 612, 761, 1059
AsuHPI GGTGA 3 cut(s) 286, 587, 642
AsuII TTCGAA 1 cut(s) 1004
AvaII GGWCC 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 654
BanI GGYRCC 1 cut(s) 1111
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 328, 488, 1209
BccI CCATC 6 cut(s) 43, 185, 857, 1070, 1159, 1389
BceAI ACGGC 2 cut(s) 805, 1358
BciT130I CCWGG 3 cut(s) 117, 210, 484
BciVI GTATCC 1 cut(s) 1345
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 3 cut(s) 530, 1116, 1226
BfmI CTRYAG 1 cut(s) 735
BfuI GTATCC 1 cut(s) 1345
BisI GCNGC 5 cut(s) 342, 477, 480, 813, 1223
BlpI GCTNAGC 1 cut(s) 497
BlsI GCNGC 5 cut(s) 343, 478, 481, 814, 1224
Bme1390I CCNGG 3 cut(s) 117, 210, 484
Bme18I GGWCC 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 775
BmgT120I GGNCC 5 cut(s) 8, 16, 612, 761, 1059
BmiI GGNNCC 3 cut(s) 278, 762, 1113
BmrFI CCNGG 3 cut(s) 117, 210, 484
BmrI ACTGGG 1 cut(s) 89
BmsI GCATC 3 cut(s) 341, 1290, 1360
BmuI ACTGGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 372, 404
Bpu1102I GCTNAGC 1 cut(s) 497
Bpu14I TTCGAA 1 cut(s) 1004
Bsa29I ATCGAT 1 cut(s) 861
BsaAI YACGTR 1 cut(s) 1333
BsaI GGTCTC 1 cut(s) 614
BsaJI CCNNGG 6 cut(s) 208, 280, 471, 483, 996, 1338
BsaWI WCCGGW 1 cut(s) 973
Bsc4I CCNNNNNNNGG 2 cut(s) 1270, 1344
Bse1I ACTGG 4 cut(s) 95, 227, 304, 1034
Bse21I CCTNAGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 60
BseAI TCCGGA 1 cut(s) 973
BseBI CCWGG 3 cut(s) 117, 210, 484
BseCI ATCGAT 1 cut(s) 861
BseDI CCNNGG 6 cut(s) 208, 280, 471, 483, 996, 1338
BseGI GGATG 3 cut(s) 177, 332, 1381
BseLI CCNNNNNNNGG 2 cut(s) 1270, 1344
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 5 cut(s) 339, 645, 834, 974, 1311
BseNI ACTGG 4 cut(s) 95, 227, 304, 1034
BseXI GCAGC 3 cut(s) 328, 488, 1209
BseYI CCCAGC 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 812
BshFI GGCC 7 cut(s) 9, 213, 458, 614, 763, 995, 1061
BshNI GGYRCC 1 cut(s) 1111
BshVI ATCGAT 1 cut(s) 861
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 974
BslFI GGGAC 2 cut(s) 191, 686
BslI CCNNNNNNNGG 2 cut(s) 1270, 1344
BsmAI GTCTC 1 cut(s) 614
BsmFI GGGAC 2 cut(s) 191, 686
BsnI GGCC 7 cut(s) 9, 213, 458, 614, 763, 995, 1061
Bso31I GGTCTC 1 cut(s) 614
Bsp119I TTCGAA 1 cut(s) 1004
Bsp1286I GDGCHC 1 cut(s) 354
Bsp13I TCCGGA 1 cut(s) 973
Bsp143I GATC 6 cut(s) 196, 487, 542, 547, 751, 1233
Bsp1720I GCTNAGC 1 cut(s) 497
Bsp19I CCATGG 2 cut(s) 471, 1338
BspACI CCGC 5 cut(s) 270, 429, 480, 812, 1294
BspANI GGCC 7 cut(s) 9, 213, 458, 614, 763, 995, 1061
BspCNI CTCAG 5 cut(s) 340, 646, 835, 975, 1312
BspDI ATCGAT 1 cut(s) 861
BspEI TCCGGA 1 cut(s) 973
BspFNI CGCG 1 cut(s) 812
BspHI TCATGA 1 cut(s) 1257
BspLI GGNNCC 3 cut(s) 278, 762, 1113
BspMAI CTGCAG 1 cut(s) 739
BspPI GGATC 3 cut(s) 495, 550, 746
BspQI GCTCTTC 1 cut(s) 905
BspT104I TTCGAA 1 cut(s) 1004
BspT107I GGYRCC 1 cut(s) 1111
BspTNI GGTCTC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 4 cut(s) 95, 227, 304, 1034
BssECI CCNNGG 6 cut(s) 208, 280, 471, 483, 996, 1338
BssMI GATC 6 cut(s) 196, 487, 542, 547, 751, 1233
BssT1I CCWWGG 2 cut(s) 471, 1338
Bst2UI CCWGG 3 cut(s) 117, 210, 484
Bst4CI ACNGT 2 cut(s) 673, 917
Bst6I CTCTTC 2 cut(s) 416, 905
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 1333
BstBI TTCGAA 1 cut(s) 1004
BstC8I GCNNGC 5 cut(s) 137, 563, 832, 1220, 1365
BstDEI CTNAG 7 cut(s) 101, 348, 497, 654, 843, 983, 1320
BstDSI CCRYGG 3 cut(s) 471, 996, 1338
BstF5I GGATG 3 cut(s) 177, 332, 1381
BstFNI CGCG 1 cut(s) 812
BstKTI GATC 6 cut(s) 199, 490, 545, 550, 754, 1236
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 6 cut(s) 196, 487, 542, 547, 751, 1233
BstMWI GCNNNNNNNGC 6 cut(s) 338, 426, 455, 743, 818, 827
BstNI CCWGG 3 cut(s) 117, 210, 484
BstNSI RCATGY 2 cut(s) 796, 1367
BstSCI CCNGG 3 cut(s) 115, 208, 482
BstSFI CTRYAG 1 cut(s) 735
BstUI CGCG 1 cut(s) 812
BstV1I GCAGC 3 cut(s) 328, 488, 1209
BstV2I GAAGAC 1 cut(s) 40
BstXI CCANNNNNNTGG 2 cut(s) 367, 587
Bsu15I ATCGAT 1 cut(s) 861
Bsu36I CCTNAGG 1 cut(s) 654
BsuI GTATCC 1 cut(s) 1345
BsuRI GGCC 7 cut(s) 9, 213, 458, 614, 763, 995, 1061
BsuTUI ATCGAT 1 cut(s) 861
BtgI CCRYGG 3 cut(s) 471, 996, 1338
BtrI CACGTC 1 cut(s) 775
BtsCI GGATG 3 cut(s) 177, 332, 1381
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 3 cut(s) 220, 297, 444
Cac8I GCNNGC 5 cut(s) 137, 563, 832, 1220, 1365
CaiI CAGNNNCTG 1 cut(s) 146
CciI TCATGA 1 cut(s) 1257
Cfr13I GGNCC 5 cut(s) 8, 16, 612, 761, 1059
ClaI ATCGAT 1 cut(s) 861
CseI GACGC 1 cut(s) 818
Csp6I GTAC 1 cut(s) 468
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 7 cut(s) 101, 348, 497, 654, 843, 983, 1320
DpnI GATC 6 cut(s) 198, 489, 544, 549, 753, 1235
DpnII GATC 6 cut(s) 196, 487, 542, 547, 751, 1233
Eam1104I CTCTTC 2 cut(s) 416, 905
EarI CTCTTC 2 cut(s) 416, 905
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 471, 1338
Eco24I GRGCYC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 614
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 352
Eco81I CCTNAGG 1 cut(s) 654
EcoICRI GAGCTC 1 cut(s) 352
EcoRII CCWGG 3 cut(s) 115, 208, 482
EcoT14I CCWWGG 2 cut(s) 471, 1338
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 2 cut(s) 471, 1338
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FaqI GGGAC 2 cut(s) 191, 686
FauNDI CATATG 1 cut(s) 817
FblI GTMKAC 2 cut(s) 668, 807
Fnu4HI GCNGC 5 cut(s) 342, 477, 480, 813, 1223
FokI GGATG 3 cut(s) 164, 319, 1368
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 5 cut(s) 342, 477, 480, 813, 1223
FspBI CTAG 3 cut(s) 530, 1116, 1226
GluI GCNGC 5 cut(s) 342, 477, 480, 813, 1223
GsaI CCCAGC 1 cut(s) 696
HaeIII GGCC 7 cut(s) 9, 213, 458, 614, 763, 995, 1061
HapII CCGG 1 cut(s) 974
HgaI GACGC 1 cut(s) 818
HincII GTYRAC 2 cut(s) 669, 808
HindII GTYRAC 2 cut(s) 669, 808
HinfI GANTC 4 cut(s) 143, 592, 937, 1001
HpaII CCGG 1 cut(s) 974
HphI GGTGA 3 cut(s) 286, 587, 642
Hpy166II GTNNAC 4 cut(s) 669, 808, 1018, 1204
Hpy188I TCNGA 5 cut(s) 32, 547, 682, 984, 1317
Hpy188III TCNNGA 5 cut(s) 14, 194, 842, 974, 1258
Hpy8I GTNNAC 4 cut(s) 669, 808, 1018, 1204
Hpy99I CGWCG 2 cut(s) 776, 812
HpyAV CCTTC 1 cut(s) 1342
HpyCH4III ACNGT 2 cut(s) 673, 917
HpyCH4IV ACGT 2 cut(s) 774, 1332
HpyF10VI GCNNNNNNNGC 6 cut(s) 338, 426, 455, 743, 818, 827
HpyF3I CTNAG 7 cut(s) 101, 348, 497, 654, 843, 983, 1320
HpySE526I ACGT 2 cut(s) 774, 1332
Kpn2I TCCGGA 1 cut(s) 973
Kzo9I GATC 6 cut(s) 196, 487, 542, 547, 751, 1233
LguI GCTCTTC 1 cut(s) 905
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 3 cut(s) 328, 488, 1209
LweI GCATC 3 cut(s) 341, 1290, 1360
MaeI CTAG 3 cut(s) 530, 1116, 1226
MaeII ACGT 2 cut(s) 774, 1332
MaeIII GTNAC 1 cut(s) 739
MalI GATC 6 cut(s) 198, 489, 544, 549, 753, 1235
MboI GATC 6 cut(s) 196, 487, 542, 547, 751, 1233
MboII GAAGA 4 cut(s) 45, 403, 613, 892
MfeI CAATTG 3 cut(s) 322, 723, 1302
MhlI GDGCHC 1 cut(s) 354
MmeI TCCRAC 3 cut(s) 136, 1202, 1255
MroI TCCGGA 1 cut(s) 973
MroXI GAANNNNTTC 1 cut(s) 605
MseI TTAA 3 cut(s) 933, 1395, 1399
MslI CAYNNNNRTG 3 cut(s) 365, 1286, 1368
MspI CCGG 1 cut(s) 974
MspR9I CCNGG 3 cut(s) 117, 210, 484
MunI CAATTG 3 cut(s) 322, 723, 1302
MvaI CCWGG 3 cut(s) 117, 210, 484
MvnI CGCG 1 cut(s) 812
MwoI GCNNNNNNNGC 6 cut(s) 338, 426, 455, 743, 818, 827
NcoI CCATGG 2 cut(s) 471, 1338
NdeI CATATG 1 cut(s) 817
NdeII GATC 6 cut(s) 196, 487, 542, 547, 751, 1233
NlaIV GGNNCC 3 cut(s) 278, 762, 1113
NmeAIII GCCGAG 1 cut(s) 261
NspI RCATGY 2 cut(s) 796, 1367
NspV TTCGAA 1 cut(s) 1004
PacI TTAATTAA 1 cut(s) 1399
PaeI GCATGC 1 cut(s) 1367
PagI TCATGA 1 cut(s) 1257
PciSI GCTCTTC 1 cut(s) 905
PcsI WCGNNNNNNNCGW 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 4 cut(s) 143, 592, 937, 1001
PflMI CCANNNNNTGG 2 cut(s) 1270, 1344
PkrI GCNGC 5 cut(s) 343, 478, 481, 814, 1224
Ppu21I YACGTR 1 cut(s) 1333
PshBI ATTAAT 1 cut(s) 1395
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 3 cut(s) 115, 208, 482
PspFI CCCAGC 1 cut(s) 692
PspGI CCWGG 3 cut(s) 115, 208, 482
PspN4I GGNNCC 3 cut(s) 278, 762, 1113
PspPI GGNCC 5 cut(s) 8, 16, 612, 761, 1059
PstI CTGCAG 1 cut(s) 739
PstNI CAGNNNCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 3 cut(s) 365, 1286, 1368
SacI GAGCTC 1 cut(s) 354
SalI GTCGAC 2 cut(s) 667, 806
SapI GCTCTTC 1 cut(s) 905
SaqAI TTAA 3 cut(s) 933, 1395, 1399
SatI GCNGC 5 cut(s) 342, 477, 480, 813, 1223
Sau3AI GATC 6 cut(s) 196, 487, 542, 547, 751, 1233
Sau96I GGNCC 5 cut(s) 8, 16, 612, 761, 1059
ScrFI CCNGG 3 cut(s) 117, 210, 484
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 3 cut(s) 341, 1290, 1360
SfcI CTRYAG 1 cut(s) 735
SfuI TTCGAA 1 cut(s) 1004
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 3 cut(s) 365, 1286, 1368
SphI GCATGC 1 cut(s) 1367
SsiI CCGC 5 cut(s) 270, 429, 480, 812, 1294
SspI AATATT 1 cut(s) 520
SspMI CTAG 3 cut(s) 530, 1116, 1226
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 3 cut(s) 115, 208, 482
StyI CCWWGG 2 cut(s) 471, 1338
TaaI ACNGT 2 cut(s) 673, 917
TaiI ACGT 2 cut(s) 777, 1335
TaqI TCGA 8 cut(s) 354, 668, 807, 850, 861, 912, 965, 1004
TauI GCSGC 2 cut(s) 482, 815
TfiI GAWTC 4 cut(s) 143, 592, 937, 1001
Tru1I TTAA 3 cut(s) 933, 1395, 1399
Tru9I TTAA 3 cut(s) 933, 1395, 1399
TscAI CASTG 3 cut(s) 227, 304, 451
TseI GCWGC 3 cut(s) 341, 476, 1222
TspDTI ATGAA 4 cut(s) 49, 791, 1206, 1246
TspGWI ACGGA 1 cut(s) 1013
TspRI CASTG 3 cut(s) 227, 304, 451
Van91I CCANNNNNTGG 2 cut(s) 1270, 1344
VpaK11BI GGWCC 1 cut(s) 16
VspI ATTAAT 1 cut(s) 1395
XapI RAATTY 2 cut(s) 604, 875
XceI RCATGY 2 cut(s) 796, 1367
XcmI CCANNNNNNNNNTGG 2 cut(s) 113, 1271
XmiI GTMKAC 2 cut(s) 668, 807
XmnI GAANNNNTTC 1 cut(s) 605
XspI CTAG 3 cut(s) 530, 1116, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.