Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4441602 .. 4441968

Gene Structure 367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G089400.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCTACAGGGAGGCATCACTCACCAAGACTTTGCAGGGCATAAGGGTACAATCTGGGCTGGAGATGTGCAGTGGATGACAGCAGGCAGAGGAATAGTTAATTCTGAAATGCCTGCAGGAGAAGGACCCAACACAGGCTTGCAGCTCTGGATCAATCTATTCCGCAAAGACAAAATGTCGGCAAGGACAGAGAATAAAACAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

69

Amino Acids

7.46

Weight (kDa)

8.23

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	158
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	134
AhdI	GACNNNNNGTC	1 cut(s)	175
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AlwI	GGATC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	154
BfmI	CTRYAG	2 cut(s)	5, 114
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	125
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	158
BssMI	GATC	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	85, 114, 140
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstSFI	CTRYAG	2 cut(s)	5, 114
BstV1I	GCAGC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	77, 207
Cac8I	GCNNGC	3 cut(s)	85, 114, 140
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	48
CviJI	RGCY	3 cut(s)	59, 138, 145
CviKI_1	RGCY	3 cut(s)	59, 138, 145
CviQI	GTAC	1 cut(s)	48
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
DriI	GACNNNNNGTC	1 cut(s)	175
Eam1105I	GACNNNNNGTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	125
FaiI	YATR	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	4 cut(s)	35, 70, 116, 142
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	8 cut(s)	21, 40, 45, 69, 102, 120, 126, 133
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	24
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MluCI	AATT	1 cut(s)	100
MnlI	CCTC	2 cut(s)	5, 83
MseI	TTAA	1 cut(s)	99
NdeII	GATC	1 cut(s)	150
NlaIV	GGNNCC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	125
Psp5II	RGGWCCY	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	125
PspPPI	RGGWCCY	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	125
SbfI	CCTGCAGG	1 cut(s)	118
SdaI	CCTGCAGG	1 cut(s)	118
SetI	ASST	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	24
SfcI	CTRYAG	2 cut(s)	5, 114
SinI	GGWCC	1 cut(s)	125
Sse8387I	CCTGCAGG	1 cut(s)	118
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	202
TasI	AATT	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	77, 207
TseI	GCWGC	1 cut(s)	142
TspRI	CASTG	2 cut(s)	77, 207
VpaK11BI	GGWCC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.