Prupe.4G093700_v2.0.a1

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
4725478 .. 4726233
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G093700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 330 bp
ATGGATTTCTCGGGGGTTGAGCAGAGATCGAGTTCTTTATCATTGGGCAAGTGGATCTGCACGGCATTTATACTGTTTGTAGCGATCATAGAGGTGTTGATTTTTGTTGTGACCGGTTGCTTTAACGGCCGTCCCCCCCCCCCTCCAACCAAACGCTGTTTCCTGGAGGTATTGTATGAGCTGTTTAAAAAGTTGAGTTGTTCAATTATCGATGACAGATCGATTCATAAGGAAGAGTTTCAACTAGCACTATTCAGAACTCCCTATGGTGAAAATCTTTTCCTGGACAGGGTATATGCTTCATACCAACATCTTGAACTAATTGACTAG

Protein Analysis

110

Amino Acids

12.58

Weight (kDa)

5.65

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 289
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 3 cut(s) 204, 242, 317
AjnI CCWGG 2 cut(s) 162, 282
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
AlwI GGATC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 1 cut(s) 127
AsiGI ACCGGT 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 10
BceAI ACGGC 3 cut(s) 78, 114, 142
BciT130I CCWGG 2 cut(s) 164, 284
BfaI CTAG 2 cut(s) 245, 328
Bme1390I CCNGG 2 cut(s) 164, 284
BmeT110I CYCGRG 1 cut(s) 10
BmrFI CCNGG 2 cut(s) 164, 284
BpmI CTGGAG 1 cut(s) 185
Bsa29I ATCGAT 2 cut(s) 210, 221
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 2 cut(s) 164, 284
BseCI ATCGAT 2 cut(s) 210, 221
BseLI CCNNNNNNNGG 1 cut(s) 289
BseX3I CGGCCG 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 1 cut(s) 129
BshTI ACCGGT 1 cut(s) 113
BshVI ATCGAT 2 cut(s) 210, 221
BsiEI CGRYCG 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 10
Bsp143I GATC 4 cut(s) 26, 54, 84, 218
BspANI GGCC 1 cut(s) 129
BspDI ATCGAT 2 cut(s) 210, 221
BspPI GGATC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 4 cut(s) 26, 54, 84, 218
Bst2UI CCWGG 2 cut(s) 164, 284
Bst4CI ACNGT 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 228
BstKTI GATC 4 cut(s) 29, 57, 87, 221
BstMBI GATC 4 cut(s) 26, 54, 84, 218
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 2 cut(s) 164, 284
BstSCI CCNGG 2 cut(s) 162, 282
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 127
Bsu15I ATCGAT 2 cut(s) 210, 221
BsuRI GGCC 1 cut(s) 129
BsuTUI ATCGAT 2 cut(s) 210, 221
Cfr10I RCCGGY 1 cut(s) 113
ClaI ATCGAT 2 cut(s) 210, 221
CspAI ACCGGT 1 cut(s) 113
CviJI RGCY 2 cut(s) 129, 181
CviKI_1 RGCY 2 cut(s) 129, 181
DpnI GATC 4 cut(s) 28, 56, 86, 220
DpnII GATC 4 cut(s) 26, 54, 84, 218
DraI TTTAAA 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 127
EagI CGGCCG 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EclXI CGGCCG 1 cut(s) 127
Eco52I CGGCCG 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 162, 282
FaiI YATR 8 cut(s) 71, 89, 177, 228, 267, 295, 297, 304
FaqI GGGAC 1 cut(s) 117
FspBI CTAG 2 cut(s) 245, 328
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 114
HinfI GANTC 1 cut(s) 223
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 26, 54, 84, 218
LpnPI CCDG 6 cut(s) 127, 149, 176, 269, 274, 296
MaeI CTAG 2 cut(s) 245, 328
MaeIII GTNAC 1 cut(s) 109
MalI GATC 4 cut(s) 28, 56, 86, 220
MboI GATC 4 cut(s) 26, 54, 84, 218
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 54
MluCI AATT 2 cut(s) 204, 321
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 3 cut(s) 85, 153, 160
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 2 cut(s) 123, 186
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 164, 284
MvaI CCWGG 2 cut(s) 164, 284
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 4 cut(s) 26, 54, 84, 218
NmuCI GTSAC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 223
PfoI TCCNGGA 2 cut(s) 162, 282
PinAI ACCGGT 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 162, 282
PspGI CCWGG 2 cut(s) 162, 282
PsuI RGATCY 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 2 cut(s) 123, 186
Sau3AI GATC 4 cut(s) 26, 54, 84, 218
ScrFI CCNGG 2 cut(s) 164, 284
SetI ASST 3 cut(s) 96, 171, 183
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 2 cut(s) 204, 321
SspMI CTAG 2 cut(s) 245, 328
StyD4I CCNGG 2 cut(s) 162, 282
TaaI ACNGT 1 cut(s) 75
TaqI TCGA 3 cut(s) 29, 210, 221
TasI AATT 2 cut(s) 204, 321
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 123, 186
Tru9I TTAA 2 cut(s) 123, 186
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 215, 291
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 2 cut(s) 245, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.