Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5057049 .. 5058490

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G099300.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAATTATTTTGTGCACTTAAAAACCAAGAAAGTGGTTGCAACGTATGATTATATGTCCCTAGAATACGCAACTGATGGGTTCTACACAATAAAATCTGATGTCTATAGCTTTGGTGTGTTGGTGCTAGAGATAATGAGTGGGAAGAGAAACATAGGATTTACTTATTGCTTGTTTTTGTTTCTTCTTCTAAATAAGCATAATGTTGTTAGATTAATTCATGTGGGACATTTATGTGTGCAACGTAACCCTGGAGATAGGCCGAGCATGCTAGTTATAGTTCTAATGACAGGACCTGCTCTGAATTCCTCGAAACTCGGGACGAATCCTGTGGAATTTTTTTGCATAATAGACTTCTATCCTTCACATAATTCAAGCAAATCCACCAGCAATGCTCTTAAGTCACATGATACATTAACAATGCAATTAATGGACCCAAACAATTTTATGAATACCCACTGTAATAAACATAAAATAACTTCCCAAATTTTCACCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

167

Amino Acids

18.91

Weight (kDa)

9.05

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AcsI	RAATTY	3 cut(s)	304, 335, 486
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	1 cut(s)	111
AluI	AGCT	1 cut(s)	111
Alw21I	GWGCWC	1 cut(s)	18
Alw44I	GTGCAC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	260
ApaLI	GTGCAC	1 cut(s)	14
ApoI	RAATTY	3 cut(s)	304, 335, 486
AseI	ATTAAT	2 cut(s)	215, 428
AspS9I	GGNCC	2 cut(s)	293, 433
AsuHPI	GGTGA	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	293, 433
BaeGI	GKGCMC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	252
BfaI	CTAG	3 cut(s)	62, 128, 272
BfmI	CTRYAG	1 cut(s)	106
BfrI	CTTAAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	2 cut(s)	293, 433
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	293, 433
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	397
BseSI	GKGCMC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	317
BslFI	GGGAC	3 cut(s)	43, 240, 334
BsmFI	GGGAC	3 cut(s)	43, 240, 334
BsnI	GGCC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	304
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	457
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	269
CaiI	CAGNNNCTG	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	293, 433
CviAII	CATG	3 cut(s)	221, 268, 407
CviJI	RGCY	2 cut(s)	111, 262
CviKI_1	RGCY	2 cut(s)	111, 262
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	293, 433
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	224, 271, 410
FaqI	GGGAC	3 cut(s)	43, 240, 334
FatI	CATG	3 cut(s)	220, 267, 406
FspBI	CTAG	3 cut(s)	62, 128, 272
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	262
Hin1II	CATG	3 cut(s)	224, 271, 410
HinfI	GANTC	1 cut(s)	325
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	100, 303
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	2 cut(s)	44, 244
HpyCH4V	TGCA	5 cut(s)	16, 41, 241, 345, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpySE526I	ACGT	2 cut(s)	44, 244
Hsp92II	CATG	3 cut(s)	224, 271, 410
LpnPI	CCDG	6 cut(s)	237, 264, 276, 309, 342, 400
MaeI	CTAG	3 cut(s)	62, 128, 272
MaeII	ACGT	2 cut(s)	44, 244
MaeIII	GTNAC	2 cut(s)	245, 402
MboII	GAAGA	3 cut(s)	157, 176, 179
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	8 cut(s)	4, 216, 304, 335, 370, 425, 442, 486
MnlI	CCTC	1 cut(s)	319
MseI	TTAA	5 cut(s)	20, 215, 399, 416, 428
MslI	CAYNNNNRTG	1 cut(s)	234
MspCI	CTTAAG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	224, 271, 410
NlaIV	GGNNCC	1 cut(s)	435
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	402
NspI	RCATGY	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	293
PshBI	ATTAAT	2 cut(s)	215, 428
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	293, 433
PspPPI	RGGWCCY	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	5 cut(s)	20, 215, 399, 416, 428
Sau96I	GGNCC	2 cut(s)	293, 433
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	4 cut(s)	47, 113, 247, 298
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	2 cut(s)	293, 433
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	8 cut(s)	4, 216, 304, 335, 370, 425, 442, 486
SspMI	CTAG	3 cut(s)	62, 128, 272
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	2 cut(s)	47, 247
TaqI	TCGA	1 cut(s)	311
TasI	AATT	8 cut(s)	4, 216, 304, 335, 370, 425, 442, 486
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	5 cut(s)	20, 215, 399, 416, 428
Tru9I	TTAA	5 cut(s)	20, 215, 399, 416, 428
TscAI	CASTG	1 cut(s)	464
TseFI	GTSAC	1 cut(s)	402
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	3 cut(s)	17, 209, 464
TspRI	CASTG	1 cut(s)	464
Vha464I	CTTAAG	1 cut(s)	398
VneI	GTGCAC	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	293, 433
VspI	ATTAAT	2 cut(s)	215, 428
XapI	RAATTY	3 cut(s)	304, 335, 486
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	3 cut(s)	62, 128, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.