Prupe.4G100000_v2.0.a1

Cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
5102975 .. 5104634
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G100000.1_v2.0.a1.CDS.6

Sequence Viewer

Length: 804 bp
ATGGTGAAATTGGTGATTTCATTTAATTCGAACGCTATATTGGTTGAAAAAATAATCCAGGGGGACATTTCGATAGTCGATATAGTCCAGGGGGTTTTCGGCAGTTTACCCTTTAAAAAATTGTATAGCCGGTCGGCTGTACTACAGGCTCTTGGCACTGATGATGTTTCCATAAAAATTACCCACTGTGGAGTTTGCTATGCTGATGTAATTTGGACCAGAAACCAACATGGAGACTCAAAGTATCCTGTTGTCCCTGGGCATGAGATTGCAGGCATTGTAAAAGAGGTGGGTTCCAATGTTCAGCGCTTCAAAGTTGGTGACCATGTGGGAGTGGGAACTCATGTCAACTCATGCAGAGATTGTGAGTACTGCAACGACAGTTTTAATGGTGTTGATGTTGATGGTACAATCGCAAAAGGAGGATACTCCATTGTCCATGAAGGGTATGAATTCAACATATCAGAAAACTATCCACTGGCTTCGGCAGCCCCTCTACTTTGTGCTGGAATTACTGTTTATGCTTCGATGGTACGCCACAAGATGAACCAACATGTTTGGCAAAAGGCATTTGGTTTGAATGTAACAATTTTCAGCACTAGCATATCCAAGAAAGAGGAAGCTGGTATGAAAACCATTTCTGGTAGTGTAACAGGTGGAACAAAGGATATCCAAGAAATGACAGATTTCTGTGCTTCAAATGGAATTCATCCAATGATTGAAATAATTCCAATTCAATCTGCAAATGAAGCTATTGAGAGGCTACTAAAAAGTGTTGTGATATACCGGTTGAGAGGCTACTAA

Protein Analysis

268

Amino Acids

29.06

Weight (kDa)

6.5

Isoelectric Point (pI)

21.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 452, 705
AfaI GTAC 4 cut(s) 141, 371, 409, 534
AfeI AGCGCT 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 553
AgeI ACCGGT 1 cut(s) 786
AgsI TTSAA 7 cut(s) 47, 313, 457, 580, 699, 722, 737
AjnI CCWGG 3 cut(s) 57, 87, 256
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 2 cut(s) 623, 752
AluI AGCT 2 cut(s) 623, 752
Alw26I GTCTC 1 cut(s) 228
Aor51HI AGCGCT 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 2 cut(s) 452, 705
AsiGI ACCGGT 1 cut(s) 786
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 3 cut(s) 16, 25, 332
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 500
BccI CCATC 2 cut(s) 398, 523
BciT130I CCWGG 3 cut(s) 59, 89, 258
BciVI GTATCC 2 cut(s) 255, 419
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 310
BfuI GTATCC 2 cut(s) 255, 419
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 3 cut(s) 59, 89, 258
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 3 cut(s) 59, 89, 258
Bpu14I TTCGAA 1 cut(s) 29
BsaJI CCNNGG 4 cut(s) 58, 88, 256, 257
BsaWI WCCGGW 1 cut(s) 786
Bse118I RCCGGY 2 cut(s) 129, 786
Bse1I ACTGG 1 cut(s) 483
BseBI CCWGG 3 cut(s) 59, 89, 258
BseDI CCNNGG 4 cut(s) 58, 88, 256, 257
BseGI GGATG 1 cut(s) 709
BseNI ACTGG 1 cut(s) 483
BseXI GCAGC 1 cut(s) 500
Bsh1285I CGRYCG 1 cut(s) 134
BshTI ACCGGT 1 cut(s) 786
BsiEI CGRYCG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 130, 787
BslFI GGGAC 2 cut(s) 77, 239
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 2 cut(s) 77, 239
Bsp119I TTCGAA 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 29
BsrFI RCCGGY 2 cut(s) 129, 786
BsrI ACTGG 1 cut(s) 483
BssAI RCCGGY 2 cut(s) 129, 786
BssECI CCNNGG 4 cut(s) 58, 88, 256, 257
Bst2UI CCWGG 3 cut(s) 59, 89, 258
Bst4CI ACNGT 3 cut(s) 188, 383, 517
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 274
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 1 cut(s) 709
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 228
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 2 cut(s) 488, 749
BstNI CCWGG 3 cut(s) 59, 89, 258
BstNSI RCATGY 1 cut(s) 557
BstPI GGTNACC 1 cut(s) 320
BstSCI CCNGG 3 cut(s) 57, 87, 256
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 500
BsuI GTATCC 2 cut(s) 255, 419
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 3 cut(s) 156, 184, 476
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 309
Cfr10I RCCGGY 2 cut(s) 129, 786
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 4 cut(s) 140, 370, 408, 533
CspAI ACCGGT 1 cut(s) 786
CviAII CATG 7 cut(s) 230, 263, 326, 344, 354, 440, 554
CviJI RGCY 9 cut(s) 129, 137, 149, 482, 491, 623, 752, 763, 798
CviKI_1 RGCY 9 cut(s) 129, 137, 149, 482, 491, 623, 752, 763, 798
CviQI GTAC 4 cut(s) 140, 370, 408, 533
DraI TTTAAA 1 cut(s) 115
Eco32I GATATC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 216
Eco47III AGCGCT 1 cut(s) 308
Eco91I GGTNACC 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 320
EcoRI GAATTC 2 cut(s) 452, 705
EcoRII CCWGG 3 cut(s) 57, 87, 256
EcoRV GATATC 1 cut(s) 670
FaeI CATG 7 cut(s) 233, 266, 329, 347, 357, 443, 557
FaqI GGGAC 2 cut(s) 77, 239
FatI CATG 7 cut(s) 229, 262, 325, 343, 353, 439, 553
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 1 cut(s) 600
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 489
HaeII RGCGCY 1 cut(s) 310
HapII CCGG 2 cut(s) 130, 787
HhaI GCGC 1 cut(s) 309
Hin1II CATG 7 cut(s) 233, 266, 329, 347, 357, 443, 557
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 130, 787
HphI GGTGA 3 cut(s) 16, 25, 332
Hpy166II GTNNAC 2 cut(s) 107, 349
Hpy188I TCNGA 1 cut(s) 466
Hpy8I GTNNAC 2 cut(s) 107, 349
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 3 cut(s) 188, 383, 517
HpyCH4V TGCA 4 cut(s) 272, 357, 375, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 749
Hsp92II CATG 7 cut(s) 233, 266, 329, 347, 357, 443, 557
HspAI GCGC 1 cut(s) 307
Lsp1109I GCAGC 1 cut(s) 500
MaeI CTAG 1 cut(s) 600
MaeIII GTNAC 3 cut(s) 320, 583, 649
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 6 cut(s) 280, 416, 504, 610, 753, 788
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 3 cut(s) 24, 114, 387
MspI CCGG 2 cut(s) 130, 787
MspR9I CCNGG 3 cut(s) 59, 89, 258
MvaI CCWGG 3 cut(s) 59, 89, 258
MwoI GCNNNNNNNGC 2 cut(s) 488, 749
NlaIII CATG 7 cut(s) 233, 266, 329, 347, 357, 443, 557
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 320
NspI RCATGY 1 cut(s) 557
NspV TTCGAA 1 cut(s) 29
PasI CCCWGGG 1 cut(s) 257
PciI ACATGT 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 726
PinAI ACCGGT 1 cut(s) 786
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PscI ACATGT 1 cut(s) 553
Psp6I CCWGG 3 cut(s) 57, 87, 256
PspEI GGTNACC 1 cut(s) 320
PspGI CCWGG 3 cut(s) 57, 87, 256
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 4 cut(s) 141, 371, 409, 534
RsaNI GTAC 4 cut(s) 140, 370, 408, 533
SaqAI TTAA 3 cut(s) 24, 114, 387
SatI GCNGC 1 cut(s) 489
Sau96I GGNCC 1 cut(s) 216
ScaI AGTACT 1 cut(s) 371
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 59, 89, 258
SetI ASST 4 cut(s) 291, 625, 658, 754
SfcI CTRYAG 1 cut(s) 143
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 1 cut(s) 216
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 3 cut(s) 57, 87, 256
TaaI ACNGT 3 cut(s) 188, 383, 517
TaqI TCGA 4 cut(s) 29, 71, 78, 527
TatI WGTACW 2 cut(s) 139, 369
Tru1I TTAA 3 cut(s) 24, 114, 387
Tru9I TTAA 3 cut(s) 24, 114, 387
TscAI CASTG 3 cut(s) 163, 191, 483
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 7 cut(s) 9, 456, 465, 560, 644, 698, 762
TspRI CASTG 3 cut(s) 163, 191, 483
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 2 cut(s) 452, 705
XceI RCATGY 1 cut(s) 557
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 1 cut(s) 600
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.