Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5104972 .. 5106658

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G100100.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGGGATGCTCTTATTACTTGGCAATGGTACTGGTTCAGCTCATATATGGTGGATCAAACATCCTCATAAAATTCTCCCTTGCAGAAGTACTCAATCCGATTGTCTTCGTGGCATGTTATGGCCATGGTTTTGCTGCCAAAAATTTTGTGCTTGCATTATTTGGAACCACCATCCATCTGAATGTGTACTATGCTGGTTTAGCATACACTTCTCCAACAGTTGCATGTGGCTTGAGTAATGTTATTCCCAGCTTGACATTTCTAATGGCAGTTCTACTTGGGTTGGAGAAGTTGAAGATTAGAACTGCTAGAGGTCAAGCTAAGGTGGCTGGCACACTTTTCGGCATTGGTGGTTCTCTTGTTTTCACTTTCTGGAAAGGAGGATACCTATTTAAAGTCTACACTGCTCAATTATCGCTAACCACGATGATATGCTTTTACGCATTGTTGCAATCTTCTTTTCTTGCTCTGTTTTTCACAAGAAATCCAATTTCATGGAGACTGGAGCGGAACCTGCAACTTTTAACCATCGTCTACTGCTCCACTTCAATCATTATAGTGGCATTGTTCTCGGCAATATCTTTCGCAGAGCGACTTCACTTTGGCAGCTTGATTGGGGCGTTTCTCATTATCGTGGGCCTTTACTGTGTGATGTGGGGAAAGAAGGAAAGACAATCTTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

230

Amino Acids

25.19

Weight (kDa)

9.32

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	525
AccBSI	CCGCTC	1 cut(s)	511
AccI	GTMKAC	2 cut(s)	402, 537
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	74, 145
AfaI	GTAC	3 cut(s)	33, 93, 191
AgsI	TTSAA	2 cut(s)	298, 552
AluBI	AGCT	4 cut(s)	43, 255, 323, 612
AluI	AGCT	4 cut(s)	43, 255, 323, 612
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	2 cut(s)	124, 640
ApeKI	GCWGC	2 cut(s)	137, 609
ApoI	RAATTY	2 cut(s)	74, 145
AspS9I	GGNCC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	124, 621
BccI	CCATC	3 cut(s)	182, 186, 539
BcgI	CGANNNNNNTGC	4 cut(s)	325, 359, 555, 589
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	525
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	2 cut(s)	138, 610
BlsI	GCNGC	2 cut(s)	139, 611
BmcAI	AGTACT	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	2 cut(s)	169, 515
BpiI	GAAGAC	1 cut(s)	100
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	39, 510
Bse3DI	GCAATG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	14, 63, 174
BseMI	GCAATG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	39, 510
BseXI	GCAGC	2 cut(s)	124, 621
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	2 cut(s)	126, 642
BsmAI	GTCTC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	126, 642
Bsp143I	GATC	1 cut(s)	56
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	2 cut(s)	126, 642
BspLI	GGNNCC	2 cut(s)	169, 515
BspMI	ACCTGC	1 cut(s)	525
BspPI	GGATC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	39, 510
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	2 cut(s)	223, 650
BstC8I	GCNNGC	2 cut(s)	156, 334
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	14, 63, 174
BstKTI	GATC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 329, 517
BstNSI	RCATGY	2 cut(s)	120, 231
BstV1I	GCAGC	2 cut(s)	124, 621
BstV2I	GAAGAC	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	126, 642
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	14, 63, 174
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	156, 334
Cfr13I	GGNCC	1 cut(s)	640
Csp6I	GTAC	3 cut(s)	32, 92, 190
CviAII	CATG	4 cut(s)	117, 128, 228, 498
CviJI	RGCY	8 cut(s)	43, 126, 234, 255, 323, 332, 612, 642
CviKI_1	RGCY	8 cut(s)	43, 126, 234, 255, 323, 332, 612, 642
CviQI	GTAC	3 cut(s)	32, 92, 190
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
DraI	TTTAAA	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	4 cut(s)	120, 131, 231, 501
FalI	AAGNNNNNCTT	1 cut(s)	664
FatI	CATG	4 cut(s)	116, 127, 227, 497
FblI	GTMKAC	2 cut(s)	402, 537
Fnu4HI	GCNGC	2 cut(s)	138, 610
FokI	GGATG	3 cut(s)	21, 50, 161
Fsp4HI	GCNGC	2 cut(s)	138, 610
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	138, 610
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	126, 642
Hin1II	CATG	4 cut(s)	120, 131, 231, 501
Hpy166II	GTNNAC	3 cut(s)	190, 403, 538
Hpy188I	TCNGA	2 cut(s)	102, 183
Hpy188III	TCNNGA	1 cut(s)	376
Hpy8I	GTNNAC	3 cut(s)	190, 403, 538
HpyAV	CCTTC	1 cut(s)	661
HpyCH4III	ACNGT	2 cut(s)	223, 650
HpyCH4V	TGCA	5 cut(s)	86, 158, 227, 454, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 329, 517
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	120, 131, 231, 501
Kzo9I	GATC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	508, 548
LpnPI	CCDG	7 cut(s)	20, 183, 265, 318, 361, 491, 530
Lsp1109I	GCAGC	2 cut(s)	124, 621
MaeI	CTAG	1 cut(s)	312
MalI	GATC	1 cut(s)	58
MbiI	CCGCTC	1 cut(s)	511
MboI	GATC	1 cut(s)	56
MboII	GAAGA	3 cut(s)	100, 310, 450
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	4 cut(s)	74, 145, 413, 492
MluNI	TGGCCA	1 cut(s)	126
MmeI	TCCRAC	2 cut(s)	242, 267
MnlI	CCTC	3 cut(s)	77, 308, 377
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	2 cut(s)	396, 527
MslI	CAYNNNNRTG	3 cut(s)	183, 560, 635
Msp20I	TGGCCA	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	203, 329, 517
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	120, 131, 231, 501
NlaIV	GGNNCC	2 cut(s)	169, 515
NmeAIII	GCCGAG	1 cut(s)	554
NspI	RCATGY	2 cut(s)	120, 231
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	139, 611
PspFI	CCCAGC	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	169, 515
PspPI	GGNCC	1 cut(s)	640
RsaI	GTAC	3 cut(s)	33, 93, 191
RsaNI	GTAC	3 cut(s)	32, 92, 190
RseI	CAYNNNNRTG	3 cut(s)	183, 560, 635
SaqAI	TTAA	2 cut(s)	396, 527
SatI	GCNGC	2 cut(s)	138, 610
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	1 cut(s)	640
ScaI	AGTACT	1 cut(s)	93
SetI	ASST	8 cut(s)	45, 257, 319, 325, 330, 393, 519, 614
SmiMI	CAYNNNNRTG	3 cut(s)	183, 560, 635
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	74, 145, 413, 492
SsiI	CCGC	1 cut(s)	511
SspMI	CTAG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	223, 650
TasI	AATT	4 cut(s)	74, 145, 413, 492
TatI	WGTACW	2 cut(s)	91, 189
Tru1I	TTAA	2 cut(s)	396, 527
Tru9I	TTAA	2 cut(s)	396, 527
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	2 cut(s)	137, 609
TspDTI	ATGAA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	2 cut(s)	74, 145
XceI	RCATGY	2 cut(s)	120, 231
XmiI	GTMKAC	2 cut(s)	402, 537
XspI	CTAG	1 cut(s)	312
ZrmI	AGTACT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.