Prupe.4G106300_v2.0.a1

Protein ROOT HAIR DEFECTIVE 3 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
5507785 .. 5509849
2065 bp
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UTR
Exon/CDS
Intron
Prupe.4G106300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 156 bp
ATGGCGATAGTGGTTCTTGGTTTCAATGAATTTATGCTCCTTCTAAAGAACACTCCCTATCTCATGGTTCTTTTTGTTGCATCTTCAAATGATACGCAGCTACGCTGTTGTGCGATGGTTTTCTTTCTTTTTGATTTTATTTCTTTTGGCACTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

5.82

Weight (kDa)

4.56

Isoelectric Point (pI)

9.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 29
AgsI TTSAA 2 cut(s) 25, 87
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 29
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 109
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
BmsI GCATC 1 cut(s) 89
BseXI GCAGC 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 128
CviAII CATG 1 cut(s) 64
CviJI RGCY 1 cut(s) 100
CviKI_1 RGCY 1 cut(s) 100
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 35, 65
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 98
FspEI CC 7 cut(s) 3, 50, 53, 69, 70, 101, 132
GluI GCNGC 1 cut(s) 98
Hin1II CATG 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 80
Hsp92II CATG 1 cut(s) 67
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 89
MboII GAAGA 1 cut(s) 75
MluCI AATT 1 cut(s) 29
NlaIII CATG 1 cut(s) 67
PkrI GCNGC 1 cut(s) 99
SatI GCNGC 1 cut(s) 98
SetI ASST 1 cut(s) 102
SfaNI GCATC 1 cut(s) 89
SgeI CNNG 2 cut(s) 29, 76
Sse9I AATT 1 cut(s) 29
TasI AATT 1 cut(s) 29
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 42
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.