Prupe.4G106700_v2.0.a1

Protein ROOT HAIR DEFECTIVE 3 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
5572138 .. 5579222
7085 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G106700.1_v2.0.a1.CDS.20

Sequence Viewer

Length: 2214 bp
ATGGAGGAAGATTGCTGCGCCACGCAACTCATCTATGGAGATGGTGAGTTTAATGCTGATGGGCTCGACAGGTTCGTCAAGGAAGTGAAGCTTGCTGAGTGTGGAGTCTCCTATGGTGTTGTTGCCATCGTGGGTCCTCGGAGCAGCGGGAAGAGCACTTTACAGGACCATTTGTTCAACAGTAAGTTTAGGGAGATGAATGCAAACAGTGTAAGGTTAGTTTCTGAGCTTTTCAGGAGCCAAACTACGAAGGGTATATGGATAGCCAAGTGTGTTGGCATTGAGCCTTGCACGATTGCCATGGATTTGGAGAGTACTGATGGCAGCGAGAGAGGCCAGGATGATACTGCATTCGAGAAGCAAAGCGCCCTATTTGCCCTGGCAGTTTCAGACATTGTGCTGATAAATATCAAAGGCTATTCAAATTATGCACTCATAATTAATGCTCCTCAACCACAACTGATGAGGCAGGAAATGTTCAAAAGGTCTCTTGACGAGCAAGACAAACCTTTTCTTGAAACATTTTTTCAGGTCATGATGAGCTTTGGCATCCCCCGTAAAACGATGTTTATGTTTGTTATACATGATAATTCAAAGACCCCGTTTCAACATTGGCACCCTGGTTTGAGGAAATTTATACTGAATGTATTATTCAGTAAAGCGCTAGAGGAAATATGGAATGGAGTTCCGAAGCCCCAAGCCTATAAAAGTACCCGCTTCAGTGATTTCTTTAGTGAAGAAGTAGTTGTTATGCCTAGTTATGAAGAGAAGGAGAAGTTTAAGGAGGAGGTTGCTCAACTGAGGCAGCGGTTTTCCCATTCTATTTCTCCAGGAGGGTTTGCTGGTGATAGAAGGGGTGTTGTCCCTGCCTCAGGATTTTCCTTTAGCGCACAACAGATTTGGAAAGTAATCAAAGACAACAAGGACCTGGATCTTCATGCTCACAAGGTTATGGTTGCCACTGTTCGGTGTGAAGAGATTGCCAACCAGAAATTTAATAAATTGATCAATGATGGGGGTTGGTTGGCATTGAAAGAAGCTGTCCAAACTGGTCCTGTACAAGGTTTTGGTAAACGGCTTAGCTCCATTGTAGGCACCTATCTTTCTGAATATGACATAGAGGCCATCTACTTTGACGAAGGTGCAAGGAACTCAAAACGACAACTGTTGGAGTCAAAAGCGTTGGATTTTGTTTACCCTACGTACACAACCATGTTGGGACATGTACGTTCTAAAGCGCTTGAAGATTTTAAAGTGAGGTTGGAAGAATCGTTAAACAAAAGAGAAGGATTTACTTCATCTGTTCGTACCTGTACTCAGTCTTCCATGCTTGAGTTTGACGAAGGATGTGCAGATGCGGCCATACAACAAGCTAATTGGGATTCTTCAAGAGTTCGCAAAAAACTTCAACGTGATATAGATGCATATGCATCATCCGTTTGTAGTGCAAAGTTGTCAAAATTGAATGGCAACTATGAGAAACAACTGTCTGCATCTTTAACGGGACCAGTAGAAGCTCTACTTGAAACTAGTGGCAAAGACACTTGGGCTTCAATAAGAAAACTTCTTAATCGTGAAACTGAATTTACAATATCAAAGTTTTCAGCTGCAGTTGCCGATTTTGAGTTGGACAAAGAAACAATTGCCCAACTGTTACAACATTTAAGGGATTACTCAAGGAATGTGGTGGAGAAAATTGCAAGAGAAGAGGCTACAAAAATTATGATCCACATGAAGGATCGGTTTTTCACAGTCTTCAATTATAACAGTGATTCAATGCCTCGGGTTTGGACAGAGAAAGTAGACATTAGAAGTATTACGAAGGATGCTCGCTCTGCGTCTATGAAGCTTTTGGCCGTCATGGCTGCTATCCGCTTGGATGAGAAGCCAGATAATATTGAAAAAGTTTTATTTTCTACTCTGATGGATGGAATTGTTAGTGTTTCATCTTCACAAGATAGGAGAATAGGAGCTTCTGCAGACCCTCTTGCCTCAAGCACTTGGGAAGAGGTTTCTTTAGAGAATACCTTAATTACTCCAGTGCAGTGCAAGTCCTTGTGGGTAGAGTTCAAAACAGAGACTGAGTATAGTGTCATTGAAGCTATTTCAGTGCAGGAGGCTTACAAGCGAAGTAACAACTGGTTGCCTCCTCCGTGGGCTATTATGGTGATGGTCGTTCATGGTTTCAACCAATTTATGCTCCTTTTAAAGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

738

Amino Acids

83.4

Weight (kDa)

6.12

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029045)

Species Orthologous Gene IDs
prunus_persica Prupe.4G106700_v2.0.a1 Prupe.4G106700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1764
AasI GACNNNNNNGTC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 615, 1094
AccI GTMKAC 1 cut(s) 1803
AciI CCGC 5 cut(s) 147, 715, 808, 1358, 1873
AclWI GGATC 3 cut(s) 939, 1720, 1746
AcoI YGGCCR 2 cut(s) 1359, 1854
AcsI RAATTY 3 cut(s) 632, 992, 1583
AcuI CTGAAG 1 cut(s) 703
AfaI GTAC 7 cut(s) 316, 712, 1059, 1205, 1227, 1309, 1315
AfeI AGCGCT 2 cut(s) 663, 1239
AfiI CCNNNNNNNGG 4 cut(s) 872, 966, 1061, 1735
AflIII ACRYGT 1 cut(s) 1222
AhlI ACTAGT 1 cut(s) 1529
AjnI CCWGG 5 cut(s) 336, 378, 619, 829, 927
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 3 cut(s) 112, 492, 2072
AlwI GGATC 3 cut(s) 939, 1720, 1746
AlwNI CAGNNNCTG 1 cut(s) 2081
Ama87I CYCGRG 1 cut(s) 1782
Aor51HI AGCGCT 2 cut(s) 663, 1239
AoxI GGCC 4 cut(s) 334, 1122, 1359, 1854
ApeKI GCWGC 6 cut(s) 15, 144, 324, 805, 1607, 1865
ApoI RAATTY 3 cut(s) 632, 992, 1583
AseI ATTAAT 1 cut(s) 441
AspLEI GCGC 5 cut(s) 20, 368, 664, 890, 1240
AspS9I GGNCC 5 cut(s) 134, 166, 925, 1052, 1505
AsuHPI GGTGA 3 cut(s) 56, 857, 2179
AvaI CYCGRG 1 cut(s) 1782
AvaII GGWCC 5 cut(s) 134, 166, 925, 1052, 1505
AxyI CCTNAGG 1 cut(s) 871
BanI GGYRCC 2 cut(s) 615, 1094
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 1306, 1338
BbsI GAAGAC 2 cut(s) 1314, 1747
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 6 cut(s) 2, 156, 336, 817, 1594, 1852
BccI CCATC 9 cut(s) 35, 53, 134, 314, 1007, 1133, 1918, 1922, 2164
BceAI ACGGC 2 cut(s) 1091, 1841
BcgI CGANNNNNNTGC 2 cut(s) 1331, 1365
BciT130I CCWGG 5 cut(s) 338, 380, 621, 831, 929
BclI TGATCA 1 cut(s) 1005
BcoDI GTCTC 3 cut(s) 112, 492, 2072
BcuI ACTAGT 1 cut(s) 1529
BfaI CTAG 3 cut(s) 665, 756, 1530
BfmI CTRYAG 2 cut(s) 1608, 1977
BfoI RGCGCY 3 cut(s) 369, 665, 1241
BglI GCCNNNNNGGC 1 cut(s) 1862
BisI GCNGC 7 cut(s) 16, 145, 325, 806, 1359, 1608, 1866
BlpI GCTNAGC 1 cut(s) 1079
BlsI GCNGC 7 cut(s) 17, 146, 326, 807, 1360, 1609, 1867
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 5 cut(s) 338, 380, 621, 831, 929
Bme18I GGWCC 5 cut(s) 134, 166, 925, 1052, 1505
BmeT110I CYCGRG 1 cut(s) 1782
BmgT120I GGNCC 5 cut(s) 134, 166, 925, 1052, 1505
BmiI GGNNCC 5 cut(s) 135, 239, 617, 1096, 1506
BmrFI CCNGG 5 cut(s) 338, 380, 621, 831, 929
BmsI GCATC 6 cut(s) 558, 1345, 1411, 1439, 1502, 1816
BpiI GAAGAC 2 cut(s) 1314, 1747
BpmI CTGGAG 2 cut(s) 813, 2022
Bpu1102I GCTNAGC 1 cut(s) 1079
BpuEI CTTGAG 3 cut(s) 1352, 1660, 1978
BsaAI YACGTR 1 cut(s) 1203
BsaBI GATNNNNATC 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 492
BsaJI CCNNGG 6 cut(s) 137, 300, 378, 619, 1781, 2153
Bsc4I CCNNNNNNNGG 4 cut(s) 872, 966, 1061, 1735
Bse1I ACTGG 4 cut(s) 1054, 1508, 2039, 2144
Bse21I CCTNAGG 1 cut(s) 871
Bse8I GATNNNNATC 1 cut(s) 407
BseBI CCWGG 5 cut(s) 338, 380, 621, 831, 929
BseDI CCNNGG 6 cut(s) 137, 300, 378, 619, 1781, 2153
BseGI GGATG 7 cut(s) 346, 549, 1352, 1433, 1831, 1885, 1933
BseJI GATNNNNATC 1 cut(s) 407
BseLI CCNNNNNNNGG 4 cut(s) 872, 966, 1061, 1735
BseMII CTCAG 6 cut(s) 87, 216, 791, 885, 1331, 2073
BseNI ACTGG 4 cut(s) 1054, 1508, 2039, 2144
BseRI GAGGAG 3 cut(s) 438, 800, 2139
BseXI GCAGC 6 cut(s) 2, 156, 336, 817, 1594, 1852
BsgI GTGCAG 3 cut(s) 1371, 2063, 2132
BshFI GGCC 4 cut(s) 336, 1124, 1361, 1856
BshNI GGYRCC 2 cut(s) 615, 1094
BsiHKAI GWGCWC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 1782
BslFI GGGAC 3 cut(s) 848, 1233, 1518
BslI CCNNNNNNNGG 4 cut(s) 872, 966, 1061, 1735
BsmAI GTCTC 3 cut(s) 112, 492, 2072
BsmFI GGGAC 3 cut(s) 848, 1233, 1518
BsmI GAATGC 2 cut(s) 205, 350
BsnI GGCC 4 cut(s) 336, 1124, 1361, 1856
Bso31I GGTCTC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 1782
Bsp1286I GDGCHC 2 cut(s) 66, 158
Bsp1407I TGTACA 1 cut(s) 1057
Bsp143I GATC 4 cut(s) 931, 1005, 1725, 1738
Bsp1720I GCTNAGC 1 cut(s) 1079
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 5 cut(s) 147, 715, 808, 1358, 1873
BspANI GGCC 4 cut(s) 336, 1124, 1361, 1856
BspCNI CTCAG 6 cut(s) 88, 217, 792, 884, 1330, 2074
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 5 cut(s) 135, 239, 617, 1096, 1506
BspMAI CTGCAG 2 cut(s) 1612, 1981
BspPI GGATC 3 cut(s) 939, 1720, 1746
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 2 cut(s) 615, 1094
BspTNI GGTCTC 1 cut(s) 492
BsrGI TGTACA 1 cut(s) 1057
BsrI ACTGG 4 cut(s) 1054, 1508, 2039, 2144
BssECI CCNNGG 6 cut(s) 137, 300, 378, 619, 1781, 2153
BssMI GATC 4 cut(s) 931, 1005, 1725, 1738
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 5 cut(s) 338, 380, 621, 831, 929
Bst4CI ACNGT 8 cut(s) 182, 209, 964, 1167, 1488, 1653, 1753, 1769
Bst6I CTCTTC 5 cut(s) 146, 759, 969, 1701, 2001
BstAUI TGTACA 1 cut(s) 1057
BstBAI YACGTR 1 cut(s) 1203
BstC8I GCNNGC 2 cut(s) 93, 1831
BstDEI CTNAG 7 cut(s) 96, 225, 800, 871, 1079, 1317, 2082
BstDSI CCRYGG 2 cut(s) 300, 2153
BstENI CCTNNNNNAGG 2 cut(s) 870, 1059
BstF5I GGATG 7 cut(s) 346, 549, 1352, 1433, 1831, 1885, 1933
BstH2I RGCGCY 3 cut(s) 369, 665, 1241
BstHHI GCGC 5 cut(s) 20, 368, 664, 890, 1240
BstKTI GATC 4 cut(s) 934, 1008, 1728, 1741
BstMAI GTCTC 3 cut(s) 112, 492, 2072
BstMBI GATC 4 cut(s) 931, 1005, 1725, 1738
BstMWI GCNNNNNNNGC 7 cut(s) 153, 333, 374, 1358, 1613, 1835, 1862
BstNI CCWGG 5 cut(s) 338, 380, 621, 831, 929
BstNSI RCATGY 1 cut(s) 1226
BstSCI CCNGG 5 cut(s) 336, 378, 619, 829, 927
BstSFI CTRYAG 2 cut(s) 1608, 1977
BstSNI TACGTA 1 cut(s) 1203
BstV1I GCAGC 6 cut(s) 2, 156, 336, 817, 1594, 1852
BstV2I GAAGAC 2 cut(s) 1314, 1747
BstX2I RGATCY 1 cut(s) 931
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 1 cut(s) 931
Bsu36I CCTNAGG 1 cut(s) 871
BsuRI GGCC 4 cut(s) 336, 1124, 1361, 1856
BtgI CCRYGG 2 cut(s) 300, 2153
BtsCI GGATG 7 cut(s) 346, 549, 1352, 1433, 1831, 1885, 1933
BtsI GCAGTG 1 cut(s) 2051
BtsIMutI CAGTG 7 cut(s) 214, 727, 960, 1774, 2046, 2051, 2115
Cac8I GCNNGC 2 cut(s) 93, 1831
CaiI CAGNNNCTG 1 cut(s) 2081
CciI TCATGA 1 cut(s) 534
CfoI GCGC 5 cut(s) 20, 368, 664, 890, 1240
Cfr13I GGNCC 5 cut(s) 134, 166, 925, 1052, 1505
CseI GACGC 1 cut(s) 1827
Csp6I GTAC 7 cut(s) 315, 711, 1058, 1204, 1226, 1308, 1314
CspCI CAANNNNNGTGG 2 cut(s) 1665, 1700
CviQI GTAC 7 cut(s) 315, 711, 1058, 1204, 1226, 1308, 1314
DdeI CTNAG 7 cut(s) 96, 225, 800, 871, 1079, 1317, 2082
DpnI GATC 4 cut(s) 933, 1007, 1727, 1740
DpnII GATC 4 cut(s) 931, 1005, 1725, 1738
DraI TTTAAA 2 cut(s) 1252, 2208
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 2 cut(s) 1359, 1854
Eam1104I CTCTTC 5 cut(s) 146, 759, 969, 1701, 2001
EarI CTCTTC 5 cut(s) 146, 759, 969, 1701, 2001
Eco105I TACGTA 1 cut(s) 1203
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 492
Eco47I GGWCC 5 cut(s) 134, 166, 925, 1052, 1505
Eco47III AGCGCT 2 cut(s) 663, 1239
Eco57I CTGAAG 1 cut(s) 703
Eco81I CCTNAGG 1 cut(s) 871
Eco88I CYCGRG 1 cut(s) 1782
EcoNI CCTNNNNNAGG 2 cut(s) 870, 1059
EcoO109I RGGNCCY 2 cut(s) 134, 925
EcoRII CCWGG 5 cut(s) 336, 378, 619, 829, 927
EcoT14I CCWWGG 1 cut(s) 300
EcoT22I ATGCAT 2 cut(s) 1426, 1432
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 300
FalI AAGNNNNNCTT 4 cut(s) 75, 107, 1506, 1538
FaqI GGGAC 3 cut(s) 848, 1233, 1518
FauI CCCGC 2 cut(s) 140, 722
FauNDI CATATG 1 cut(s) 1426
FbaI TGATCA 1 cut(s) 1005
FblI GTMKAC 1 cut(s) 1803
Fnu4HI GCNGC 7 cut(s) 16, 145, 325, 806, 1359, 1608, 1866
FokI GGATG 7 cut(s) 353, 536, 1359, 1420, 1838, 1892, 1940
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 7 cut(s) 16, 145, 325, 806, 1359, 1608, 1866
FspBI CTAG 3 cut(s) 665, 756, 1530
GlaI GCGC 5 cut(s) 19, 367, 663, 889, 1239
GluI GCNGC 7 cut(s) 16, 145, 325, 806, 1359, 1608, 1866
GsuI CTGGAG 2 cut(s) 813, 2022
HaeII RGCGCY 3 cut(s) 369, 665, 1241
HaeIII GGCC 4 cut(s) 336, 1124, 1361, 1856
HgaI GACGC 1 cut(s) 1827
HhaI GCGC 5 cut(s) 20, 368, 664, 890, 1240
Hin6I GCGC 5 cut(s) 18, 366, 662, 888, 1238
HinP1I GCGC 5 cut(s) 18, 366, 662, 888, 1238
HindIII AAGCTT 2 cut(s) 89, 1847
HinfI GANTC 5 cut(s) 105, 1172, 1268, 1382, 1772
HphI GGTGA 3 cut(s) 56, 857, 2179
Hpy166II GTNNAC 4 cut(s) 1073, 1195, 1206, 1804
Hpy188I TCNGA 6 cut(s) 141, 226, 391, 690, 1108, 1923
Hpy188III TCNNGA 8 cut(s) 235, 355, 491, 515, 535, 873, 1389, 1574
Hpy8I GTNNAC 4 cut(s) 1073, 1195, 1206, 1804
HpyAV CCTTC 8 cut(s) 244, 763, 846, 1133, 1280, 1337, 1729, 1816
HpyCH4III ACNGT 8 cut(s) 182, 209, 964, 1167, 1488, 1653, 1753, 1769
HpyCH4IV ACGT 3 cut(s) 1202, 1228, 1411
HpyF10VI GCNNNNNNNGC 7 cut(s) 153, 333, 374, 1358, 1613, 1835, 1862
HpyF3I CTNAG 7 cut(s) 96, 225, 800, 871, 1079, 1317, 2082
HpySE526I ACGT 3 cut(s) 1202, 1228, 1411
HspAI GCGC 5 cut(s) 18, 366, 662, 888, 1238
Ksp22I TGATCA 1 cut(s) 1005
Kzo9I GATC 4 cut(s) 931, 1005, 1725, 1738
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 6 cut(s) 141, 237, 451, 1088, 1970, 2205
Lsp1109I GCAGC 6 cut(s) 2, 156, 336, 817, 1594, 1852
LweI GCATC 6 cut(s) 558, 1345, 1411, 1439, 1502, 1816
MaeI CTAG 3 cut(s) 665, 756, 1530
MaeII ACGT 3 cut(s) 1202, 1228, 1411
MaeIII GTNAC 2 cut(s) 1653, 2132
MalI GATC 4 cut(s) 933, 1007, 1727, 1740
MboI GATC 4 cut(s) 931, 1005, 1725, 1738
MfeI CAATTG 1 cut(s) 1641
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 2 cut(s) 66, 158
MlyI GAGTC 2 cut(s) 114, 1181
MmeI TCCRAC 4 cut(s) 1149, 1164, 1242, 1608
Mph1103I ATGCAT 2 cut(s) 1426, 1432
MslI CAYNNNNRTG 1 cut(s) 1211
MspA1I CMGCKG 3 cut(s) 147, 808, 1607
MspR9I CCNGG 5 cut(s) 338, 380, 621, 831, 929
MunI CAATTG 1 cut(s) 1641
Mva1269I GAATGC 2 cut(s) 205, 350
MvaI CCWGG 5 cut(s) 338, 380, 621, 831, 929
MwoI GCNNNNNNNGC 7 cut(s) 153, 333, 374, 1358, 1613, 1835, 1862
NcoI CCATGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 1426
NdeII GATC 4 cut(s) 931, 1005, 1725, 1738
NlaIV GGNNCC 5 cut(s) 135, 239, 617, 1096, 1506
NsiI ATGCAT 2 cut(s) 1426, 1432
NspI RCATGY 1 cut(s) 1226
PagI TCATGA 1 cut(s) 534
PciI ACATGT 1 cut(s) 1222
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 2 cut(s) 205, 350
PfeI GAWTC 3 cut(s) 1268, 1382, 1772
PfoI TCCNGGA 1 cut(s) 829
PkrI GCNGC 7 cut(s) 17, 146, 326, 807, 1360, 1609, 1867
PleI GAGTC 2 cut(s) 113, 1180
PpsI GAGTC 2 cut(s) 113, 1180
Ppu21I YACGTR 1 cut(s) 1203
PpuMI RGGWCCY 2 cut(s) 134, 925
PscI ACATGT 1 cut(s) 1222
PshBI ATTAAT 1 cut(s) 441
PsiI TTATAA 1 cut(s) 1764
Psp5II RGGWCCY 2 cut(s) 134, 925
Psp6I CCWGG 5 cut(s) 336, 378, 619, 829, 927
PspGI CCWGG 5 cut(s) 336, 378, 619, 829, 927
PspN4I GGNNCC 5 cut(s) 135, 239, 617, 1096, 1506
PspPI GGNCC 5 cut(s) 134, 166, 925, 1052, 1505
PspPPI RGGWCCY 2 cut(s) 134, 925
PstI CTGCAG 2 cut(s) 1612, 1981
PstNI CAGNNNCTG 1 cut(s) 2081
PsuI RGATCY 1 cut(s) 931
PvuII CAGCTG 1 cut(s) 1607
RsaI GTAC 7 cut(s) 316, 712, 1059, 1205, 1227, 1309, 1315
RsaNI GTAC 7 cut(s) 315, 711, 1058, 1204, 1226, 1308, 1314
RseI CAYNNNNRTG 1 cut(s) 1211
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 7 cut(s) 16, 145, 325, 806, 1359, 1608, 1866
Sau3AI GATC 4 cut(s) 931, 1005, 1725, 1738
Sau96I GGNCC 5 cut(s) 134, 166, 925, 1052, 1505
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 2 cut(s) 114, 1181
ScrFI CCNGG 5 cut(s) 338, 380, 621, 831, 929
SduI GDGCHC 2 cut(s) 66, 158
SfaNI GCATC 6 cut(s) 558, 1345, 1411, 1439, 1502, 1816
SfcI CTRYAG 2 cut(s) 1608, 1977
SinI GGWCC 5 cut(s) 134, 166, 925, 1052, 1505
SmiMI CAYNNNNRTG 1 cut(s) 1211
SmlI CTYRAG 3 cut(s) 1331, 1675, 1993
SmoI CTYRAG 3 cut(s) 1331, 1675, 1993
SnaBI TACGTA 1 cut(s) 1203
SpeI ACTAGT 1 cut(s) 1529
SsiI CCGC 5 cut(s) 147, 715, 808, 1358, 1873
SspI AATATT 1 cut(s) 1897
SspMI CTAG 3 cut(s) 665, 756, 1530
StyD4I CCNGG 5 cut(s) 336, 378, 619, 829, 927
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 8 cut(s) 182, 209, 964, 1167, 1488, 1653, 1753, 1769
TaiI ACGT 3 cut(s) 1205, 1231, 1414
TaqI TCGA 2 cut(s) 66, 354
TatI WGTACW 3 cut(s) 314, 1057, 1313
TauI GCSGC 1 cut(s) 1361
TfiI GAWTC 3 cut(s) 1268, 1382, 1772
TscAI CASTG 7 cut(s) 214, 727, 967, 1774, 2046, 2051, 2115
TseI GCWGC 6 cut(s) 15, 144, 324, 805, 1607, 1865
TspDTI ATGAA 8 cut(s) 212, 777, 926, 1287, 1748, 1859, 1935, 2168
TspGWI ACGGA 2 cut(s) 1426, 2142
TspRI CASTG 7 cut(s) 214, 727, 967, 1774, 2046, 2051, 2115
VpaK11BI GGWCC 5 cut(s) 134, 166, 925, 1052, 1505
VspI ATTAAT 1 cut(s) 441
XagI CCTNNNNNAGG 2 cut(s) 870, 1059
XapI RAATTY 3 cut(s) 632, 992, 1583
XceI RCATGY 1 cut(s) 1226
XmiI GTMKAC 1 cut(s) 1803
XspI CTAG 3 cut(s) 665, 756, 1530
ZrmI AGTACT 1 cut(s) 316
Zsp2I ATGCAT 2 cut(s) 1426, 1432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.