Prupe.4G109800_v2.0.a1

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
5802054 .. 5803285
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G109800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 237 bp
ATGGAAAGGTTACCTTCTTACAATAACTGGTGGGAGATGGAAGAGGGAGAGTATACCCATCATCCCAGGACTATCACTAAGATTATTTTTTATGTTCACGCATTTGTGGGCTGCATCGTGAGGATTCTCGTTGAGATTATTGTGAGCACTCTCGCATTAGTGTCCAGTATCGTGAGGTTAGTATATGTATATACGTACCTTTTGGGGCTTTTAGGTGACCATATCCTTATAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

9.09

Weight (kDa)

6.01

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 53
AfaI GTAC 1 cut(s) 197
AjnI CCWGG 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 98
BccI CCATC 2 cut(s) 31, 66
BciT130I CCWGG 1 cut(s) 67
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 65
Bse1I ACTGG 2 cut(s) 32, 165
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 61
BseNI ACTGG 2 cut(s) 32, 165
BseXI GCAGC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 149
BsrI ACTGG 2 cut(s) 32, 165
BssECI CCNNGG 1 cut(s) 65
BssNAI GTATAC 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 78
BstEII GGTNACC 2 cut(s) 9, 215
BstF5I GGATG 1 cut(s) 61
BstNI CCWGG 1 cut(s) 67
BstPI GGTNACC 2 cut(s) 9, 215
BstSCI CCNGG 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 98
BstZ17I GTATAC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 61
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 2 cut(s) 111, 208
CviKI_1 RGCY 2 cut(s) 111, 208
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco105I TACGTA 1 cut(s) 195
Eco91I GGTNACC 2 cut(s) 9, 215
EcoO65I GGTNACC 2 cut(s) 9, 215
EcoRII CCWGG 1 cut(s) 65
FaiI YATR 8 cut(s) 54, 93, 184, 186, 190, 192, 222, 230
FalI AAGNNNNNCTT 1 cut(s) 30
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 112
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 54, 97
Hpy188III TCNNGA 2 cut(s) 118, 172
Hpy8I GTNNAC 2 cut(s) 54, 97
HpyAV CCTTC 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 194
LpnPI CCDG 4 cut(s) 13, 52, 79, 178
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 1 cut(s) 123
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 9, 215
MboII GAAGA 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 149
MnlI CCTC 3 cut(s) 37, 114, 168
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 65
PspEI GGTNACC 2 cut(s) 9, 215
PspGI CCWGG 1 cut(s) 65
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SatI GCNGC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 149
SetI ASST 6 cut(s) 11, 16, 179, 197, 201, 217
SfaNI GCATC 1 cut(s) 123
SgeI CNNG 9 cut(s) 40, 78, 79, 110, 130, 140, 164, 177, 184
SnaBI TACGTA 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 65
TaiI ACGT 1 cut(s) 197
TfiI GAWTC 1 cut(s) 124
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.