Prupe.4G110200_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
5862181 .. 5863529
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G110200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1188 bp
ATGGCAGAGTGCTTGAAGCATGATATCCAACAATTCAACCAGCATCAGCAGCAGCGTCGTGAGCAAGAGCAAGACCAAAAGAAAAAGAAGATGAAGAAGTTGGAGTTCAACATAACCGATGCGGCTGATTGCTTCCGATTCGTGCCGGCCCCTATGGACCAACTGCTGTATGAAACCGTTGCGAGGAATGTTTTCTCGCCAGGAGAATTAGAATCAGAATTTTCGAACCCAATGTCTCTGCGGCGGCGGCTGCGGAAAGAGATTTTGGTGCCCTTGAGACAAGCCTTGGCGCCAGAGGACGAAGAAGGTGCCAACAAGTGGGGTTATTATCAACGTCTTGTGTACGACGGAGAGCCCGATGTCTCTGATGTACTCTCTGCCTCTGCGGCTCGCAAGTATATGGTGGCGCTTAAAAAAGCCATTGCCGCCGCCGAGTCCAAGTCCGAGTCCGTGTCCGAGAACATGATTAATGCCGGTGCTGTGCTTCCACACTGGATCGTACGCTACGCCGTGGACAAAAGTGGTGGATTCGAGCGAGCGGCTGAGCTTCAGTGGAAGAGAATGCTGGAGGACGTGTACAAAAAGCAGGGGAGGCTGAACAACTGCTTGGCTGTTTGTGACGTTGCGGCGTCAGAGTCGGTGGCTCTGGGAATGTTAGTGTCTCATCTGAGCCAAGGGCCGTGGGAAGGAAAGGTGGTGAGTCACACCCAAAAACCTCAGCTGCATTTGGTACGAGGCGAAGATCTCAAGTCCAAGTTCAGCTTTATGCACAGTTTGGAGGAGCGTCAGGACTGGGAGGTTGATCTGGGGAAGGTGTATGATTTGATTCTGGAAGTGGCGGTGAATGAGAATGTGAAGGCAGAGCAGATGGTGAGGAAAGTCTTTGTGTTCACCTGCTTCAAACACTTCAGTGACGGCTGCTGGAAGCCTCGCGGCGGAGATTATGAGGAAATACAGAGGAAGTTTGAGGAGAAGGGGTATGCCGTGCCGCACTTGGTGATTTGGAATCTCCTCAGTGTGTGGTATGCGCCGCTGCGTACCGGAGAGCCAGGGGTGACGTTGTTGGGTGGTTTCTCCGACGCAATGCTCAAGTCCTTCTTGGAGAATGACGGTGAACTTAGCCCCGAGCAGGTCATGGAATTAGCCATCTCTCCCCAAAGCAATCAAAATCTGGCTGTCTTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

396

Amino Acids

45.04

Weight (kDa)

5.73

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 902
Acc36I ACCTGC 2 cut(s) 902, 1120
AccB1I GGYRCC 3 cut(s) 268, 289, 308
AccB7I CCANNNNNTGG 1 cut(s) 318
AccBSI CCGCTC 1 cut(s) 539
AccII CGCG 1 cut(s) 933
AclWI GGATC 1 cut(s) 503
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 2 cut(s) 533, 892
AcyI GRCGYC 2 cut(s) 290, 629
AdeI CACNNNGTG 1 cut(s) 997
AfaI GTAC 6 cut(s) 344, 372, 501, 578, 732, 1039
AfiI CCNNNNNNNGG 5 cut(s) 183, 318, 686, 935, 1129
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 4 cut(s) 16, 37, 109, 901
AjiI CACGTC 1 cut(s) 574
AjnI CCWGG 2 cut(s) 199, 1048
AjuI GAANNNNNNNTTGG 4 cut(s) 248, 280, 590, 622
AleI CACNNNNGTG 1 cut(s) 909
AluBI AGCT 3 cut(s) 547, 721, 762
AluI AGCT 3 cut(s) 547, 721, 762
Alw26I GTCTC 4 cut(s) 240, 271, 367, 666
AlwI GGATC 1 cut(s) 503
Ama87I CYCGRG 1 cut(s) 1124
AoxI GGCC 2 cut(s) 147, 677
ApeKI GCWGC 6 cut(s) 49, 52, 250, 721, 918, 1033
ApoI RAATTY 1 cut(s) 218
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AseI ATTAAT 1 cut(s) 468
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 3 cut(s) 292, 409, 1030
AspS9I GGNCC 3 cut(s) 148, 157, 677
AsuHPI GGTGA 7 cut(s) 709, 853, 883, 883, 1009, 1066, 1124
AsuII TTCGAA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 1124
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 273
BanI GGYRCC 3 cut(s) 268, 289, 308
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 1171
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 6 cut(s) 61, 64, 237, 708, 905, 1020
BccI CCATC 2 cut(s) 862, 1154
BceAI ACGGC 4 cut(s) 494, 664, 931, 968
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 290, 324
BciT130I CCWGG 2 cut(s) 201, 1050
BcoDI GTCTC 4 cut(s) 240, 271, 367, 666
BfoI RGCGCY 2 cut(s) 293, 410
BfuAI ACCTGC 2 cut(s) 902, 1120
BglI GCCNNNNNGGC 1 cut(s) 386
BglII AGATCT 1 cut(s) 742
BlpI GCTNAGC 1 cut(s) 543
Bme1390I CCNGG 2 cut(s) 201, 1050
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 1124
BmgBI CACGTC 1 cut(s) 574
BmgT120I GGNCC 3 cut(s) 148, 157, 677
BmiI GGNNCC 4 cut(s) 150, 270, 291, 310
BmrFI CCNGG 2 cut(s) 201, 1050
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 2 cut(s) 52, 109
BmuI ACTGGG 1 cut(s) 802
BpiI GAAGAC 1 cut(s) 1171
BpmI CTGGAG 1 cut(s) 587
Bpu10I CCTNAGC 1 cut(s) 717
Bpu1102I GCTNAGC 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 3 cut(s) 295, 731, 1073
BsaHI GRCGYC 2 cut(s) 290, 629
BsaJI CCNNGG 5 cut(s) 285, 510, 673, 680, 1049
BsaWI WCCGGW 1 cut(s) 1040
BsaXI ACNNNNNCTCC 4 cut(s) 560, 590, 962, 992
Bsc4I CCNNNNNNNGG 5 cut(s) 183, 318, 686, 935, 1129
Bse118I RCCGGY 2 cut(s) 145, 473
Bse1I ACTGG 2 cut(s) 497, 797
Bse3DI GCAATG 2 cut(s) 420, 1089
BseBI CCWGG 2 cut(s) 201, 1050
BseDI CCNNGG 5 cut(s) 285, 510, 673, 680, 1049
BseLI CCNNNNNNNGG 5 cut(s) 183, 318, 686, 935, 1129
BseMI GCAATG 2 cut(s) 420, 1089
BseMII CTCAG 4 cut(s) 534, 659, 731, 1027
BseNI ACTGG 2 cut(s) 497, 797
BseRI GAGGAG 3 cut(s) 794, 983, 1001
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 6 cut(s) 61, 64, 237, 708, 905, 1020
Bsh1236I CGCG 1 cut(s) 933
BshFI GGCC 2 cut(s) 149, 679
BshNI GGYRCC 3 cut(s) 268, 289, 308
BsiHKCI CYCGRG 1 cut(s) 1124
BsiSI CCGG 3 cut(s) 146, 474, 1041
BsiWI CGTACG 1 cut(s) 499
BslI CCNNNNNNNGG 5 cut(s) 183, 318, 686, 935, 1129
BsmAI GTCTC 4 cut(s) 240, 271, 367, 666
BsmI GAATGC 1 cut(s) 567
BsnI GGCC 2 cut(s) 149, 679
BsoBI CYCGRG 1 cut(s) 1124
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 273, 357
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 3 cut(s) 495, 742, 802
Bsp1720I GCTNAGC 1 cut(s) 543
BspANI GGCC 2 cut(s) 149, 679
BspCNI CTCAG 4 cut(s) 535, 660, 730, 1026
BspFNI CGCG 1 cut(s) 933
BspLI GGNNCC 4 cut(s) 150, 270, 291, 310
BspMI ACCTGC 2 cut(s) 902, 1120
BspPI GGATC 1 cut(s) 503
BspT104I TTCGAA 1 cut(s) 224
BspT107I GGYRCC 3 cut(s) 268, 289, 308
BsrBI CCGCTC 1 cut(s) 539
BsrDI GCAATG 2 cut(s) 420, 1089
BsrFI RCCGGY 2 cut(s) 145, 473
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 2 cut(s) 497, 797
BssAI RCCGGY 2 cut(s) 145, 473
BssECI CCNNGG 5 cut(s) 285, 510, 673, 680, 1049
BssMI GATC 3 cut(s) 495, 742, 802
BssNI GRCGYC 2 cut(s) 290, 629
BssT1I CCWWGG 2 cut(s) 285, 673
Bst2UI CCWGG 2 cut(s) 201, 1050
Bst4CI ACNGT 3 cut(s) 178, 773, 1112
Bst6I CTCTTC 1 cut(s) 551
BstACI GRCGYC 2 cut(s) 290, 629
BstAUI TGTACA 1 cut(s) 576
BstBI TTCGAA 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 147, 391, 537
BstDEI CTNAG 5 cut(s) 543, 668, 717, 1013, 1118
BstDSI CCRYGG 2 cut(s) 510, 680
BstFNI CGCG 1 cut(s) 933
BstH2I RGCGCY 2 cut(s) 293, 410
BstHHI GCGC 3 cut(s) 292, 409, 1030
BstKTI GATC 3 cut(s) 498, 745, 805
BstMAI GTCTC 4 cut(s) 240, 271, 367, 666
BstMBI GATC 3 cut(s) 495, 742, 802
BstMWI GCNNNNNNNGC 7 cut(s) 49, 61, 247, 250, 386, 425, 592
BstNI CCWGG 2 cut(s) 201, 1050
BstSCI CCNGG 2 cut(s) 199, 1048
BstSLI GKGCMC 1 cut(s) 273
BstUI CGCG 1 cut(s) 933
BstV1I GCAGC 6 cut(s) 61, 64, 237, 708, 905, 1020
BstV2I GAAGAC 1 cut(s) 1171
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 2 cut(s) 149, 679
BtgI CCRYGG 2 cut(s) 510, 680
BtrI CACGTC 1 cut(s) 574
BtsIMutI CAGTG 4 cut(s) 490, 557, 916, 1021
BveI ACCTGC 2 cut(s) 902, 1120
Cac8I GCNNGC 3 cut(s) 147, 391, 537
CfoI GCGC 3 cut(s) 292, 409, 1030
Cfr10I RCCGGY 2 cut(s) 145, 473
Cfr13I GGNCC 3 cut(s) 148, 157, 677
CseI GACGC 4 cut(s) 44, 618, 773, 1088
Csp6I GTAC 6 cut(s) 343, 371, 500, 577, 731, 1038
CspCI CAANNNNNGTGG 4 cut(s) 505, 540, 662, 697
CviAII CATG 3 cut(s) 20, 463, 1135
CviQI GTAC 6 cut(s) 343, 371, 500, 577, 731, 1038
DdeI CTNAG 5 cut(s) 543, 668, 717, 1013, 1118
DinI GGCGCC 1 cut(s) 291
DpnI GATC 3 cut(s) 497, 744, 804
DpnII GATC 3 cut(s) 495, 742, 802
DraIII CACNNNGTG 1 cut(s) 997
Eam1104I CTCTTC 1 cut(s) 551
EarI CTCTTC 1 cut(s) 551
EciI GGCGGA 1 cut(s) 951
Eco130I CCWWGG 2 cut(s) 285, 673
Eco24I GRGCYC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 533, 892
Eco88I CYCGRG 1 cut(s) 1124
EcoRII CCWGG 2 cut(s) 199, 1048
EcoRV GATATC 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 285, 673
EcoT38I GRGCYC 1 cut(s) 357
EgeI GGCGCC 1 cut(s) 291
EheI GGCGCC 1 cut(s) 291
ErhI CCWWGG 2 cut(s) 285, 673
FaeI CATG 3 cut(s) 23, 466, 1138
FalI AAGNNNNNCTT 4 cut(s) 746, 778, 1082, 1114
FatI CATG 3 cut(s) 19, 462, 1134
FriOI GRGCYC 1 cut(s) 357
GlaI GCGC 3 cut(s) 291, 408, 1029
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 2 cut(s) 293, 410
HaeIII GGCC 2 cut(s) 149, 679
HapII CCGG 3 cut(s) 146, 474, 1041
HgaI GACGC 4 cut(s) 44, 618, 773, 1088
HhaI GCGC 3 cut(s) 292, 409, 1030
Hin1I GRCGYC 2 cut(s) 290, 629
Hin1II CATG 3 cut(s) 23, 466, 1138
Hin6I GCGC 3 cut(s) 290, 407, 1028
HinP1I GCGC 3 cut(s) 290, 407, 1028
HinfI GANTC 9 cut(s) 138, 212, 434, 446, 528, 635, 700, 826, 1006
HpaII CCGG 3 cut(s) 146, 474, 1041
HphI GGTGA 7 cut(s) 709, 853, 883, 883, 1009, 1066, 1124
Hpy166II GTNNAC 5 cut(s) 343, 514, 577, 891, 1115
Hpy188I TCNGA 8 cut(s) 137, 217, 367, 445, 457, 634, 669, 1078
Hpy188III TCNNGA 3 cut(s) 59, 788, 830
Hpy8I GTNNAC 5 cut(s) 343, 514, 577, 891, 1115
Hpy99I CGWCG 3 cut(s) 60, 350, 1082
HpyAV CCTTC 6 cut(s) 299, 680, 805, 850, 967, 1105
HpyCH4III ACNGT 3 cut(s) 178, 773, 1112
HpyCH4IV ACGT 4 cut(s) 334, 573, 621, 1058
HpyCH4V TGCA 2 cut(s) 724, 769
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 61, 247, 250, 386, 425, 592
HpyF3I CTNAG 5 cut(s) 543, 668, 717, 1013, 1118
HpySE526I ACGT 4 cut(s) 334, 573, 621, 1058
Hsp92I GRCGYC 2 cut(s) 290, 629
Hsp92II CATG 3 cut(s) 23, 466, 1138
HspAI GCGC 3 cut(s) 290, 407, 1028
KasI GGCGCC 1 cut(s) 289
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Kzo9I GATC 3 cut(s) 495, 742, 802
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 6 cut(s) 61, 64, 237, 708, 905, 1020
LweI GCATC 2 cut(s) 52, 109
MaeII ACGT 4 cut(s) 334, 573, 621, 1058
MaeIII GTNAC 4 cut(s) 617, 701, 911, 1054
MalI GATC 3 cut(s) 497, 744, 804
MbiI CCGCTC 1 cut(s) 539
MboI GATC 3 cut(s) 495, 742, 802
MboII GAAGA 6 cut(s) 100, 106, 314, 568, 752, 1171
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 2 cut(s) 273, 357
MluCI AATT 4 cut(s) 32, 206, 218, 1139
Mly113I GGCGCC 1 cut(s) 290
MlyI GAGTC 4 cut(s) 443, 455, 644, 709
MmeI TCCRAC 3 cut(s) 52, 81, 1101
MroNI GCCGGC 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 2 cut(s) 411, 468
MslI CAYNNNNRTG 1 cut(s) 909
MspA1I CMGCKG 2 cut(s) 721, 1033
MspI CCGG 3 cut(s) 146, 474, 1041
MspR9I CCNGG 2 cut(s) 201, 1050
Mva1269I GAATGC 1 cut(s) 567
MvaI CCWGG 2 cut(s) 201, 1050
MvnI CGCG 1 cut(s) 933
MwoI GCNNNNNNNGC 7 cut(s) 49, 61, 247, 250, 386, 425, 592
NaeI GCCGGC 1 cut(s) 147
NarI GGCGCC 1 cut(s) 290
NdeII GATC 3 cut(s) 495, 742, 802
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 3 cut(s) 23, 466, 1138
NlaIV GGNNCC 4 cut(s) 150, 270, 291, 310
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 4 cut(s) 617, 701, 911, 1054
NspV TTCGAA 1 cut(s) 224
OliI CACNNNNGTG 1 cut(s) 909
PaqCI CACCTGC 1 cut(s) 902
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PctI GAATGC 1 cut(s) 567
PdiI GCCGGC 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 5 cut(s) 138, 212, 528, 826, 1006
Pfl23II CGTACG 1 cut(s) 499
PflMI CCANNNNNTGG 1 cut(s) 318
PleI GAGTC 4 cut(s) 442, 454, 643, 708
PluTI GGCGCC 1 cut(s) 293
PpsI GAGTC 4 cut(s) 442, 454, 643, 708
PshBI ATTAAT 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 199, 1048
PspGI CCWGG 2 cut(s) 199, 1048
PspLI CGTACG 1 cut(s) 499
PspN4I GGNNCC 4 cut(s) 150, 270, 291, 310
PspPI GGNCC 3 cut(s) 148, 157, 677
PsuI RGATCY 1 cut(s) 742
PvuII CAGCTG 1 cut(s) 721
RsaI GTAC 6 cut(s) 344, 372, 501, 578, 732, 1039
RsaNI GTAC 6 cut(s) 343, 371, 500, 577, 731, 1038
RseI CAYNNNNRTG 1 cut(s) 909
SaqAI TTAA 2 cut(s) 411, 468
Sau3AI GATC 3 cut(s) 495, 742, 802
Sau96I GGNCC 3 cut(s) 148, 157, 677
SchI GAGTC 4 cut(s) 443, 455, 644, 709
ScrFI CCNGG 2 cut(s) 201, 1050
SduI GDGCHC 2 cut(s) 273, 357
SfaNI GCATC 2 cut(s) 52, 109
SfoI GGCGCC 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 224
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 909
SmlI CTYRAG 3 cut(s) 274, 746, 1088
SmoI CTYRAG 3 cut(s) 274, 746, 1088
Sse9I AATT 4 cut(s) 32, 206, 218, 1139
SspDI GGCGCC 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 199, 1048
StyI CCWWGG 2 cut(s) 285, 673
TaaI ACNGT 3 cut(s) 178, 773, 1112
TaiI ACGT 4 cut(s) 337, 576, 624, 1061
TaqI TCGA 3 cut(s) 224, 531, 1182
TasI AATT 4 cut(s) 32, 206, 218, 1139
TatI WGTACW 2 cut(s) 370, 576
TfiI GAWTC 5 cut(s) 138, 212, 528, 826, 1006
Tru1I TTAA 2 cut(s) 411, 468
Tru9I TTAA 2 cut(s) 411, 468
TscAI CASTG 4 cut(s) 497, 557, 916, 1021
TseFI GTSAC 4 cut(s) 617, 701, 911, 1054
TseI GCWGC 6 cut(s) 49, 52, 250, 721, 918, 1033
Tsp45I GTSAC 4 cut(s) 617, 701, 911, 1054
TspDTI ATGAA 2 cut(s) 107, 186
TspGWI ACGGA 2 cut(s) 363, 439
TspRI CASTG 4 cut(s) 497, 557, 916, 1021
Van91I CCANNNNNTGG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 157
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.