Prupe.4G133100_v2.0.a1

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
7374535 .. 7375019
485 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G133100.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 252 bp
ATGGAACTATTTGGCTACGATGAGAAACGGATTAAGCACTACAGAACTTGCTTAGCCAGAGCATTTGGCTCTGCTGCCAACATGGTTGCAACTTCTCTTGACTCCAGGGAGGAATTAATGGTGAAGTATTCAAAAGCTTTGAGAAACTTGAGGGAATTAGAGAATAGGGGATGCAAAATATTCCACGGGCTAGATATGTGCACACCATGCACTATCACCCTCTCCTTATCAAGATGCAGTTTGATCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

84

Amino Acids

9.51

Weight (kDa)

8.69

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 132
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw21I GWGCWC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 199
ApaLI GTGCAC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 74
AseI ATTAAT 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 133, 208
BaeGI GKGCMC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 61
BcgI CGANNNNNNTGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 106
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 2 cut(s) 161, 224
BpmI CTGGAG 1 cut(s) 88
Bpu1102I GCTNAGC 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 105, 184
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 105, 184
BseGI GGATG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 243
Bsp1720I GCTNAGC 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 105, 184
BssMI GATC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 106
BstAPI GCANNNNNTGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 52
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 40
BstSLI GKGCMC 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 1 cut(s) 176
CviAII CATG 2 cut(s) 82, 207
CviJI RGCY 5 cut(s) 15, 56, 69, 137, 190
CviKI_1 RGCY 5 cut(s) 15, 56, 69, 137, 190
DdeI CTNAG 1 cut(s) 52
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 104
FaeI CATG 2 cut(s) 85, 210
FaiI YATR 3 cut(s) 83, 197, 208
FatI CATG 2 cut(s) 81, 206
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 88
Hin1II CATG 2 cut(s) 85, 210
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 1 cut(s) 101
HphI GGTGA 2 cut(s) 133, 208
Hpy166II GTNNAC 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 98, 231
Hpy8I GTNNAC 1 cut(s) 201
HpyCH4V TGCA 5 cut(s) 89, 174, 201, 210, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 52
Hsp92II CATG 2 cut(s) 85, 210
Kzo9I GATC 1 cut(s) 243
LpnPI CCDG 3 cut(s) 70, 91, 118
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 161, 224
MaeI CTAG 1 cut(s) 191
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 2 cut(s) 113, 155
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 3 cut(s) 103, 144, 230
MseI TTAA 2 cut(s) 33, 116
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeII GATC 1 cut(s) 243
NlaIII CATG 2 cut(s) 85, 210
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PshBI ATTAAT 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
SaqAI TTAA 2 cut(s) 33, 116
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 243
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 203
SetI ASST 1 cut(s) 139
SfaNI GCATC 2 cut(s) 161, 224
SfcI CTRYAG 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 2 cut(s) 113, 155
SspI AATATT 1 cut(s) 180
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 104
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 113, 155
Tru1I TTAA 2 cut(s) 33, 116
Tru9I TTAA 2 cut(s) 33, 116
TseI GCWGC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 43
VneI GTGCAC 1 cut(s) 199
VspI ATTAAT 1 cut(s) 116
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.