Prupe.4G137200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
7631270 .. 7631850
581 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G137200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 315 bp
ATGTATTATTTTTCTTTAGCTGCCTATAGCATTTTCTTCAATGCATCTAGATGTCTACTTATTCTTACTGTATTTCTCTTGGCTTCACTTTATGTGTTCTTGGCCATAGAGAAAGCCAAAATCTTTCATGAACTGGCAGCTTTGGCTTGTAAGCAAGAAGGCAGGAACTTGGTTCATCTGCAGTTTCAGGAGACCTCTGCATATAATCATTCAAATGGCTCATATTACAATGATTTTCGAGACCGAAGGCCCCATACTTTTGAGACTGGCTTTATGGACCTCACCAATGGGTCACTATTTGGTGTGGGTTGTCCC
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.01

Weight (kDa)

6.89

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 102
AgsI TTSAA 2 cut(s) 40, 213
AluBI AGCT 2 cut(s) 20, 140
AluI AGCT 2 cut(s) 20, 140
Alw26I GTCTC 3 cut(s) 185, 234, 257
AoxI GGCC 2 cut(s) 102, 248
ApeKI GCWGC 2 cut(s) 20, 137
AspS9I GGNCC 2 cut(s) 249, 277
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 104
BarI GAAGNNNNNNTAC 2 cut(s) 238, 270
BbvI GCAGC 2 cut(s) 7, 149
BcoDI GTCTC 3 cut(s) 185, 234, 257
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 2 cut(s) 25, 179
BisI GCNGC 2 cut(s) 21, 138
BlsI GCNGC 2 cut(s) 22, 139
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 249, 277
BmiI GGNNCC 1 cut(s) 251
BmsI GCATC 1 cut(s) 53
BsaI GGTCTC 2 cut(s) 185, 234
Bse1I ACTGG 2 cut(s) 138, 271
BseNI ACTGG 2 cut(s) 138, 271
BseXI GCAGC 2 cut(s) 7, 149
BshFI GGCC 2 cut(s) 104, 250
BslFI GGGAC 1 cut(s) 297
BsmAI GTCTC 3 cut(s) 185, 234, 257
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 2 cut(s) 104, 250
Bso31I GGTCTC 2 cut(s) 185, 234
BspANI GGCC 2 cut(s) 104, 250
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 251
BspMAI CTGCAG 1 cut(s) 183
BspTNI GGTCTC 2 cut(s) 185, 234
BsrI ACTGG 2 cut(s) 138, 271
Bst4CI ACNGT 1 cut(s) 70
BstMAI GTCTC 3 cut(s) 185, 234, 257
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSFI CTRYAG 2 cut(s) 25, 179
BstV1I GCAGC 2 cut(s) 7, 149
BsuRI GGCC 2 cut(s) 104, 250
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 249, 277
CviAII CATG 1 cut(s) 128
CviJI RGCY 9 cut(s) 20, 83, 104, 116, 140, 146, 219, 250, 270
CviKI_1 RGCY 9 cut(s) 20, 83, 104, 116, 140, 146, 219, 250, 270
EaeI YGGCCR 1 cut(s) 102
Eco31I GGTCTC 2 cut(s) 185, 234
Eco47I GGWCC 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 46
FaeI CATG 1 cut(s) 131
FaiI YATR 9 cut(s) 27, 93, 107, 129, 202, 204, 223, 255, 275
FaqI GGGAC 1 cut(s) 297
FatI CATG 1 cut(s) 127
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 21, 138
Fsp4HI GCNGC 2 cut(s) 21, 138
FspBI CTAG 1 cut(s) 48
GluI GCNGC 2 cut(s) 21, 138
HaeIII GGCC 2 cut(s) 104, 250
Hin1II CATG 1 cut(s) 131
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 4 cut(s) 48, 128, 188, 239
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 152, 240
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 44, 181, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 131
LpnPI CCDG 4 cut(s) 119, 148, 173, 252
Lsp1109I GCAGC 2 cut(s) 7, 149
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 291
MboII GAAGA 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 104
MnlI CCTC 2 cut(s) 205, 290
Mox20I TGGCCA 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 46
MscI TGGCCA 1 cut(s) 104
MslI CAYNNNNRTG 2 cut(s) 49, 213
Msp20I TGGCCA 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 291
NsiI ATGCAT 1 cut(s) 46
PagI TCATGA 1 cut(s) 127
PkrI GCNGC 2 cut(s) 22, 139
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 2 cut(s) 249, 277
PstI CTGCAG 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 49, 213
SatI GCNGC 2 cut(s) 21, 138
Sau96I GGNCC 2 cut(s) 249, 277
SetI ASST 4 cut(s) 22, 142, 197, 282
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 2 cut(s) 25, 179
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 2 cut(s) 49, 213
SspMI CTAG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 238
TaqII GACCGA 1 cut(s) 258
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 2 cut(s) 20, 137
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 3 cut(s) 116, 144, 164
VpaK11BI GGWCC 1 cut(s) 277
XbaI TCTAGA 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 55
XspI CTAG 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.