Prupe.4G150600_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
8619898 .. 8620359
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G150600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 462 bp
ATGGATCCGAGCACAAAAAACCGCATTCAAAAAGAGCTTAAAGATATTAAAAAGGACCGTAACCCTTTGTACAAAGCAGTAGATACAGTAAAAGATAACATTTATCATTGGCATGCCACAATTATGGGACCTCCTGAGAGCCCATATGAAGGAGGTTTTTTTAAGCTTGATATTGAATTTCCCTCTAGTTATCCATTTCAGCCCCCAAAGGTGAAGTTTATTACCAAAGTGTACCACCCAAATATCAATAGCAATGGAAGCATTTGCCTCAACGTCCTAAAAAACGAATGGACCCCTGCCCTTACCATCCCTAAGGTGTTGATCTCAATCATGTCCTTGCTGACTATACCTAACCCTGACGACCCTCTCGACAAGGATGTCGCCCACGTCTACAAGACGGATCTACAGGCCTACAACGCCACTGCAAGGGCATGGACTCTCTGGCATGCGCAAAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

154

Amino Acids

17.56

Weight (kDa)

8.87

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
Acc16I TGCGCA 1 cut(s) 450
AccI GTMKAC 1 cut(s) 390
AciI CCGC 1 cut(s) 22
AclWI GGATC 2 cut(s) 12, 408
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 2 cut(s) 71, 233
AfiI CCNNNNNNNGG 2 cut(s) 149, 426
AgsI TTSAA 2 cut(s) 29, 176
AjiI CACGTC 1 cut(s) 388
AluBI AGCT 2 cut(s) 37, 166
AluI AGCT 2 cut(s) 37, 166
Alw21I GWGCWC 1 cut(s) 14
AlwI GGATC 2 cut(s) 12, 408
AoxI GGCC 1 cut(s) 408
ApoI RAATTY 1 cut(s) 176
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 3 cut(s) 55, 128, 291
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 3 cut(s) 55, 128, 291
AxyI CCTNAGG 1 cut(s) 312
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 14
BccI CCATC 1 cut(s) 314
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 404
Bme18I GGWCC 3 cut(s) 55, 128, 291
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 55, 128, 291
BmiI GGNNCC 3 cut(s) 6, 129, 293
BsaBI GATNNNNATC 1 cut(s) 326
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 426
Bse21I CCTNAGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 326
BseGI GGATG 2 cut(s) 306, 382
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 149, 426
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 126
BshFI GGCC 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 14
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 149, 426
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 14, 143
Bsp1407I TGTACA 1 cut(s) 69
Bsp143I GATC 3 cut(s) 4, 321, 400
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 6, 129, 293
BspPI GGATC 2 cut(s) 12, 408
BsrDI GCAATG 1 cut(s) 259
BsrGI TGTACA 1 cut(s) 69
BssMI GATC 3 cut(s) 4, 321, 400
Bst4CI ACNGT 2 cut(s) 59, 88
BstAUI TGTACA 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 114, 447
BstDEI CTNAG 2 cut(s) 135, 312
BstF5I GGATG 2 cut(s) 306, 382
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 7, 324, 403
BstMBI GATC 3 cut(s) 4, 321, 400
BstMWI GCNNNNNNNGC 2 cut(s) 258, 416
BstNSI RCATGY 2 cut(s) 116, 449
BstSFI CTRYAG 1 cut(s) 404
BstX2I RGATCY 2 cut(s) 4, 400
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 2 cut(s) 4, 400
Bsu36I CCTNAGG 1 cut(s) 312
BsuRI GGCC 1 cut(s) 410
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 306, 382
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 114, 447
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 55, 128, 291
Csp6I GTAC 2 cut(s) 70, 232
CviAII CATG 4 cut(s) 113, 331, 432, 446
CviJI RGCY 5 cut(s) 37, 141, 166, 202, 410
CviKI_1 RGCY 5 cut(s) 37, 141, 166, 202, 410
CviQI GTAC 2 cut(s) 70, 232
DdeI CTNAG 2 cut(s) 135, 312
DpnI GATC 3 cut(s) 6, 323, 402
DpnII GATC 3 cut(s) 4, 321, 400
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eco147I AGGCCT 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 143
Eco47I GGWCC 3 cut(s) 55, 128, 291
Eco81I CCTNAGG 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 4 cut(s) 116, 334, 435, 449
FaiI YATR 8 cut(s) 114, 125, 145, 147, 332, 347, 433, 447
FaqI GGGAC 1 cut(s) 141
FatI CATG 4 cut(s) 112, 330, 431, 445
FauNDI CATATG 1 cut(s) 145
FblI GTMKAC 1 cut(s) 390
FokI GGATG 2 cut(s) 293, 389
FriOI GRGCYC 1 cut(s) 143
FspBI CTAG 1 cut(s) 186
FspI TGCGCA 1 cut(s) 450
GlaI GCGC 1 cut(s) 450
HaeIII GGCC 1 cut(s) 410
HhaI GCGC 1 cut(s) 451
Hin1II CATG 4 cut(s) 116, 334, 435, 449
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 436
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 232, 391
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 134, 368
Hpy8I GTNNAC 2 cut(s) 232, 391
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 59, 88
HpyCH4IV ACGT 2 cut(s) 273, 387
HpyCH4V TGCA 1 cut(s) 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 416
HpyF3I CTNAG 2 cut(s) 135, 312
HpySE526I ACGT 2 cut(s) 273, 387
Hsp92II CATG 4 cut(s) 116, 334, 435, 449
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 3 cut(s) 4, 321, 400
LpnPI CCDG 5 cut(s) 147, 309, 369, 392, 427
MaeI CTAG 1 cut(s) 186
MaeII ACGT 2 cut(s) 273, 387
MaeIII GTNAC 1 cut(s) 59
MalI GATC 3 cut(s) 6, 323, 402
MboI GATC 3 cut(s) 4, 321, 400
MflI RGATCY 2 cut(s) 4, 400
MhlI GDGCHC 2 cut(s) 14, 143
MluCI AATT 2 cut(s) 120, 176
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 5 cut(s) 141, 146, 193, 278, 375
MseI TTAA 3 cut(s) 39, 48, 162
MslI CAYNNNNRTG 2 cut(s) 111, 122
Mva1269I GAATGC 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 258, 416
NdeI CATATG 1 cut(s) 145
NdeII GATC 3 cut(s) 4, 321, 400
NlaIII CATG 4 cut(s) 116, 334, 435, 449
NlaIV GGNNCC 3 cut(s) 6, 129, 293
NsbI TGCGCA 1 cut(s) 450
NspI RCATGY 2 cut(s) 116, 449
PaeI GCATGC 2 cut(s) 116, 449
PceI AGGCCT 1 cut(s) 410
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PctI GAATGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
PspN4I GGNNCC 3 cut(s) 6, 129, 293
PspPI GGNCC 3 cut(s) 55, 128, 291
PspPPI RGGWCCY 1 cut(s) 128
PsuI RGATCY 2 cut(s) 4, 400
RsaI GTAC 2 cut(s) 71, 233
RsaNI GTAC 2 cut(s) 70, 232
RseI CAYNNNNRTG 2 cut(s) 111, 122
SaqAI TTAA 3 cut(s) 39, 48, 162
Sau3AI GATC 3 cut(s) 4, 321, 400
Sau96I GGNCC 3 cut(s) 55, 128, 291
SchI GAGTC 1 cut(s) 430
SduI GDGCHC 2 cut(s) 14, 143
SetI ASST 9 cut(s) 39, 133, 157, 168, 213, 276, 318, 352, 390
SfcI CTRYAG 1 cut(s) 404
SinI GGWCC 3 cut(s) 55, 128, 291
SmiMI CAYNNNNRTG 2 cut(s) 111, 122
SphI GCATGC 2 cut(s) 116, 449
Sse9I AATT 2 cut(s) 120, 176
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 1 cut(s) 22
SspMI CTAG 1 cut(s) 186
StuI AGGCCT 1 cut(s) 410
TaaI ACNGT 2 cut(s) 59, 88
TaiI ACGT 2 cut(s) 276, 390
TaqI TCGA 1 cut(s) 369
TasI AATT 2 cut(s) 120, 176
TatI WGTACW 1 cut(s) 69
Tru1I TTAA 3 cut(s) 39, 48, 162
Tru9I TTAA 3 cut(s) 39, 48, 162
TscAI CASTG 1 cut(s) 427
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 1 cut(s) 427
VpaK11BI GGWCC 3 cut(s) 55, 128, 291
XapI RAATTY 1 cut(s) 176
XceI RCATGY 2 cut(s) 116, 449
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.