Prupe.4G164200_v2.0.a1

Receptor-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
9535006 .. 9536243
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G164200.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 729 bp
ATGACTGCAGCATATATGTACCAAACAGACTTTCAGACGCGAAACCATCTCCGTTCACAAAATGATCTCAAAGTAGTTGTAGATGCGGAGAAACATCAGTTTTCAAAGCTCAAGAATCTAGAGATCTTGACTCTGGGTAATAATCAAATCATAAGACCAATTCCAAGTTGGTTGGGGACTCTTCCTAGGCTGCTTTGTCTAGACTTACTATCAAGGTTGGTTTATGAACCTAATATTGCATCTCAAGTAGAAAACACTAGTTATGAATTTGAATTACCTATCTTTTCGGGCGTACTCACAAATCCAAGTTTTCAATGGAGGAAGTTGTCTTTCTTTGGAGCATCGATAGACCTATCTAATAATAACATAGATGCTTCTTCGCCAGTTGATTCTTCACTCCAACAACTTCTCCGACGTCATTCTAGACCAAATATCCAAACTCAAGAACTAAGAGAATTTGGATATCTCCGTGAATCTTTTTGTGGACCAAATAAGGGCATTGATGAAGATGACAGGAACAACATGGACAATGGGCGTCATCAACTTCCATGGTTTTATATTTTCACTGCGTTGGGGTTCATAGTAGAATTTCGAGGAGTATGTGGTTCTTTAATTATTAACAAGACTTGGAGATCTGCATTTTTTCAATTCATAGATAACGTACAACATAAGCTCTATGTGATGATATTAGTGCGCATCAACATGATAAAAAGAAGGCTTAGAGGCTAG

Protein Analysis

243

Amino Acids

28.19

Weight (kDa)

9.19

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 418
Acc16I TGCGCA 1 cut(s) 695
AccII CGCG 1 cut(s) 40
AciI CCGC 1 cut(s) 86
AcsI RAATTY 3 cut(s) 266, 455, 587
AcyI GRCGYC 2 cut(s) 415, 535
AfaI GTAC 3 cut(s) 20, 294, 663
AfiI CCNNNNNNNGG 1 cut(s) 494
AgsI TTSAA 4 cut(s) 105, 272, 314, 647
AhlI ACTAGT 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 2 cut(s) 109, 673
AluI AGCT 2 cut(s) 109, 673
ApeKI GCWGC 2 cut(s) 8, 190
ApoI RAATTY 3 cut(s) 266, 455, 587
AspA2I CCTAGG 1 cut(s) 185
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 1 cut(s) 485
AvaII GGWCC 1 cut(s) 485
AvrII CCTAGG 1 cut(s) 185
BbvI GCAGC 2 cut(s) 20, 177
BccI CCATC 1 cut(s) 54
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 6 cut(s) 119, 186, 200, 258, 423, 727
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 2 cut(s) 123, 632
BisI GCNGC 2 cut(s) 9, 191
BlnI CCTAGG 1 cut(s) 185
BlsI GCNGC 2 cut(s) 10, 192
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 485
BmsI GCATC 5 cut(s) 73, 248, 350, 361, 705
BpuEI CTTGAG 3 cut(s) 95, 228, 426
Bsa29I ATCGAT 1 cut(s) 344
BsaHI GRCGYC 2 cut(s) 415, 535
BsaJI CCNNGG 2 cut(s) 185, 548
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 185, 548
BseLI CCNNNNNNNGG 1 cut(s) 494
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 609
BseXI GCAGC 2 cut(s) 20, 177
Bsh1236I CGCG 1 cut(s) 40
BshVI ATCGAT 1 cut(s) 344
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 64, 123, 632
Bsp19I CCATGG 1 cut(s) 548
BspACI CCGC 1 cut(s) 86
BspDI ATCGAT 1 cut(s) 344
BspFNI CGCG 1 cut(s) 40
BspMAI CTGCAG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 185, 548
BssMI GATC 3 cut(s) 64, 123, 632
BssNI GRCGYC 2 cut(s) 415, 535
BssT1I CCWWGG 2 cut(s) 185, 548
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 2 cut(s) 415, 535
BstDEI CTNAG 2 cut(s) 449, 719
BstDSI CCRYGG 1 cut(s) 548
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 3 cut(s) 67, 126, 635
BstMBI GATC 3 cut(s) 64, 123, 632
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 20, 177
BstX2I RGATCY 2 cut(s) 123, 632
BstYI RGATCY 2 cut(s) 123, 632
Bsu15I ATCGAT 1 cut(s) 344
BsuTUI ATCGAT 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 548
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 564
CfoI GCGC 1 cut(s) 696
Cfr13I GGNCC 1 cut(s) 485
ClaI ATCGAT 1 cut(s) 344
CseI GACGC 2 cut(s) 46, 524
Csp6I GTAC 3 cut(s) 19, 293, 662
CviAII CATG 3 cut(s) 523, 549, 703
CviJI RGCY 5 cut(s) 109, 190, 673, 718, 726
CviKI_1 RGCY 5 cut(s) 109, 190, 673, 718, 726
CviQI GTAC 3 cut(s) 19, 293, 662
DdeI CTNAG 2 cut(s) 449, 719
DpnI GATC 3 cut(s) 66, 125, 634
DpnII GATC 3 cut(s) 64, 123, 632
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 2 cut(s) 185, 548
Eco32I GATATC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 485
EcoRV GATATC 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 185, 548
ErhI CCWWGG 2 cut(s) 185, 548
FaeI CATG 3 cut(s) 526, 552, 706
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 522, 548, 702
Fnu4HI GCNGC 2 cut(s) 9, 191
Fsp4HI GCNGC 2 cut(s) 9, 191
FspAI RTGCGCAY 1 cut(s) 695
FspBI CTAG 6 cut(s) 119, 186, 200, 258, 423, 727
FspI TGCGCA 1 cut(s) 695
GlaI GCGC 1 cut(s) 695
GluI GCNGC 2 cut(s) 9, 191
HgaI GACGC 2 cut(s) 46, 524
HhaI GCGC 1 cut(s) 696
Hin1I GRCGYC 2 cut(s) 415, 535
Hin1II CATG 3 cut(s) 526, 552, 706
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HinfI GANTC 5 cut(s) 115, 130, 178, 389, 473
Hpy166II GTNNAC 2 cut(s) 56, 485
Hpy188I TCNGA 2 cut(s) 36, 413
Hpy188III TCNNGA 6 cut(s) 112, 119, 127, 200, 423, 443
Hpy8I GTNNAC 2 cut(s) 56, 485
Hpy99I CGWCG 1 cut(s) 417
HpyAV CCTTC 1 cut(s) 708
HpyCH4IV ACGT 2 cut(s) 415, 660
HpyCH4V TGCA 3 cut(s) 8, 239, 638
HpyF3I CTNAG 2 cut(s) 449, 719
HpySE526I ACGT 2 cut(s) 415, 660
Hsp92I GRCGYC 2 cut(s) 415, 535
Hsp92II CATG 3 cut(s) 526, 552, 706
HspAI GCGC 1 cut(s) 694
Kzo9I GATC 3 cut(s) 64, 123, 632
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 3 cut(s) 119, 396, 499
Lsp1109I GCAGC 2 cut(s) 20, 177
LweI GCATC 5 cut(s) 73, 248, 350, 361, 705
MaeI CTAG 6 cut(s) 119, 186, 200, 258, 423, 727
MaeII ACGT 2 cut(s) 415, 660
MalI GATC 3 cut(s) 66, 125, 634
MboI GATC 3 cut(s) 64, 123, 632
MboII GAAGA 4 cut(s) 173, 369, 384, 518
MflI RGATCY 2 cut(s) 123, 632
MluCI AATT 7 cut(s) 159, 266, 272, 455, 587, 612, 647
MlyI GAGTC 2 cut(s) 124, 172
MmeI TCCRAC 2 cut(s) 424, 436
MnlI CCTC 3 cut(s) 312, 587, 716
MseI TTAA 2 cut(s) 611, 618
MslI CAYNNNNRTG 1 cut(s) 701
MvnI CGCG 1 cut(s) 40
NcoI CCATGG 1 cut(s) 548
NdeII GATC 3 cut(s) 64, 123, 632
NlaIII CATG 3 cut(s) 526, 552, 706
NsbI TGCGCA 1 cut(s) 695
PfeI GAWTC 3 cut(s) 115, 389, 473
PkrI GCNGC 2 cut(s) 10, 192
PleI GAGTC 2 cut(s) 124, 172
PpsI GAGTC 2 cut(s) 124, 172
PspPI GGNCC 1 cut(s) 485
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 2 cut(s) 123, 632
RsaI GTAC 3 cut(s) 20, 294, 663
RsaNI GTAC 3 cut(s) 19, 293, 662
RseI CAYNNNNRTG 1 cut(s) 701
SaqAI TTAA 2 cut(s) 611, 618
SatI GCNGC 2 cut(s) 9, 191
Sau3AI GATC 3 cut(s) 64, 123, 632
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 2 cut(s) 124, 172
SetI ASST 8 cut(s) 111, 218, 232, 280, 354, 418, 663, 675
SfaNI GCATC 5 cut(s) 73, 248, 350, 361, 705
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 3 cut(s) 110, 243, 441
SmoI CTYRAG 3 cut(s) 110, 243, 441
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 7 cut(s) 159, 266, 272, 455, 587, 612, 647
SsiI CCGC 1 cut(s) 86
SspI AATATT 1 cut(s) 235
SspMI CTAG 6 cut(s) 119, 186, 200, 258, 423, 727
StyI CCWWGG 2 cut(s) 185, 548
TaiI ACGT 2 cut(s) 418, 663
TaqI TCGA 2 cut(s) 344, 592
TasI AATT 7 cut(s) 159, 266, 272, 455, 587, 612, 647
TfiI GAWTC 3 cut(s) 115, 389, 473
Tru1I TTAA 2 cut(s) 611, 618
Tru9I TTAA 2 cut(s) 611, 618
TscAI CASTG 1 cut(s) 571
TseI GCWGC 2 cut(s) 8, 190
TspDTI ATGAA 5 cut(s) 240, 279, 519, 568, 640
TspGWI ACGGA 2 cut(s) 41, 458
TspRI CASTG 1 cut(s) 571
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 3 cut(s) 266, 455, 587
XbaI TCTAGA 3 cut(s) 118, 199, 422
XcmI CCANNNNNNNNNTGG 2 cut(s) 165, 312
XmaJI CCTAGG 1 cut(s) 185
XspI CTAG 6 cut(s) 119, 186, 200, 258, 423, 727
ZraI GACGTC 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.