Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9616964 .. 9618184

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G165700.1_v2.0.a1.CDS.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCTTTCCGAGTCACTCTTCCATTAGGTTTCAGAGGCCAACTGGAAAACCCGGTTGGTGAAAACGCCACTCTCACATTTGGGAGAGACGGTAACTTTGTTTTCGCCAACACCGATGGTCGAGTGGCGTGGCAAACCAACACTGCCAACAAAGGGTTTGTAGTGCTTCCAACAGGCAACATGGTCCTCTATAACTCAAAGGTAACCAATTTTGTGAGTTGGGCCTCCGAGAAAGAAAACAAAGATGGGCCGTACAGCTTGGGATCATTGGAGCATGTAACGATACATAGTGGTCCAGATGAGGGTTCTGGTTATGACTTGACCTTAAATTATCAAGCAGCCAACCCTTCCTCCATTGGAACTATCTATCTAGCTAAGACCAAATACAATAGCACATCAACGTTCCTTGGGCTTGGAATTGATGGAAATGTCAAGCTTTACACTTACAATGACAAGATTGATTTTGGTGCATGGGAAGTGACCTTCAGTTTTTTCGACAGAGACAATTCAATCTGGTGGGAAAATGAGTGCCAATTGCCAGAGCGATGTGGGAAGTTTGGGCTTTGTGAGGGCAGCCAATGTACTTGTGAGCCTGAGAAGCTTACTTCTTGTAGGGCAAGCAGCTTCCGCTATTATAAGGTTGAAGGGGTTGATCATTACTTAAGCAAGTACACAAGTGGAATTTCTGTGAAAGAAAATGATTGTGGCAAGAAGTGTACTTCCGATTGCAAGTGTTTGGGGTACTTTTACAACCAGGACACATCAAGGTGTTGGATTGCTTATGATTTGAAAACCTTGACTAAAGTTGCCAATTCTATTCATGCGGGTTGCATCAAGACACCCAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

284

Amino Acids

31.52

Weight (kDa)

6.22

Isoelectric Point (pI)

19.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AciI	CCGC	2 cut(s)	628, 824
AclI	AACGTT	1 cut(s)	401
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	681
AcuI	CTGAAG	1 cut(s)	469
AfaI	GTAC	5 cut(s)	254, 583, 671, 718, 743
AfiI	CCNNNNNNNGG	2 cut(s)	153, 302
AflII	CTTAAG	1 cut(s)	661
AgsI	TTSAA	3 cut(s)	510, 644, 790
AjnI	CCWGG	1 cut(s)	753
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	5 cut(s)	258, 374, 436, 601, 624
AluI	AGCT	5 cut(s)	258, 374, 436, 601, 624
Alw26I	GTCTC	2 cut(s)	81, 495
AlwI	GGATC	1 cut(s)	271
AoxI	GGCC	3 cut(s)	37, 222, 248
ApeKI	GCWGC	3 cut(s)	338, 573, 621
ApoI	RAATTY	1 cut(s)	681
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspS9I	GGNCC	4 cut(s)	184, 222, 248, 293
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	2 cut(s)	184, 293
BbvI	GCAGC	3 cut(s)	350, 585, 633
BccI	CCATC	3 cut(s)	110, 239, 416
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	755
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	81, 495
BfaI	CTAG	1 cut(s)	371
BfrI	CTTAAG	1 cut(s)	661
BisI	GCNGC	3 cut(s)	339, 574, 622
BlsI	GCNGC	3 cut(s)	340, 575, 623
Bme1390I	CCNGG	2 cut(s)	53, 755
Bme18I	GGWCC	2 cut(s)	184, 293
BmgT120I	GGNCC	4 cut(s)	184, 222, 248, 293
BmrFI	CCNGG	2 cut(s)	53, 755
BmsI	GCATC	1 cut(s)	840
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 335, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 302
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	755
BseDI	CCNNGG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	153, 302
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	350, 585, 633
BshFI	GGCC	3 cut(s)	39, 224, 250
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	153, 302
BsmAI	GTCTC	2 cut(s)	81, 495
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	39, 224, 250
Bsp143I	GATC	2 cut(s)	263, 652
BspACI	CCGC	2 cut(s)	628, 824
BspANI	GGCC	3 cut(s)	39, 224, 250
BspCNI	CTCAG	1 cut(s)	586
BspPI	GGATC	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	661
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	263, 652
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	755
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	24
BstAFI	CTTAAG	1 cut(s)	661
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	2 cut(s)	375, 594
BstEII	GGTNACC	1 cut(s)	202
BstKTI	GATC	2 cut(s)	266, 655
BstMAI	GTCTC	2 cut(s)	81, 495
BstMBI	GATC	2 cut(s)	263, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	598, 627
BstNI	CCWGG	1 cut(s)	755
BstNSI	RCATGY	1 cut(s)	278
BstPI	GGTNACC	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	51, 753
BstV1I	GCAGC	3 cut(s)	350, 585, 633
BsuRI	GGCC	3 cut(s)	39, 224, 250
BtgZI	GCGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	619
Cfr13I	GGNCC	4 cut(s)	184, 222, 248, 293
Csp6I	GTAC	5 cut(s)	253, 582, 670, 717, 742
CviAII	CATG	4 cut(s)	181, 275, 471, 821
CviQI	GTAC	5 cut(s)	253, 582, 670, 717, 742
DdeI	CTNAG	2 cut(s)	375, 594
DpnI	GATC	2 cut(s)	265, 654
DpnII	GATC	2 cut(s)	263, 652
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	184, 293
Eco57I	CTGAAG	1 cut(s)	469
Eco91I	GGTNACC	1 cut(s)	202
EcoO65I	GGTNACC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	4 cut(s)	184, 278, 474, 824
FaiI	YATR	9 cut(s)	182, 192, 276, 288, 315, 472, 636, 783, 822
FatI	CATG	4 cut(s)	180, 274, 470, 820
FauI	CCCGC	1 cut(s)	817
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	3 cut(s)	339, 574, 622
Fsp4HI	GCNGC	3 cut(s)	339, 574, 622
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	3 cut(s)	339, 574, 622
HaeIII	GGCC	3 cut(s)	39, 224, 250
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	4 cut(s)	184, 278, 474, 824
HindIII	AAGCTT	2 cut(s)	434, 599
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	672, 717
Hpy188I	TCNGA	4 cut(s)	11, 35, 229, 724
Hpy188III	TCNNGA	2 cut(s)	296, 835
Hpy8I	GTNNAC	2 cut(s)	672, 717
HpyAV	CCTTC	3 cut(s)	357, 493, 638
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	3 cut(s)	470, 729, 831
HpyF10VI	GCNNNNNNNGC	2 cut(s)	598, 627
HpyF3I	CTNAG	2 cut(s)	375, 594
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	4 cut(s)	184, 278, 474, 824
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	263, 652
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	3 cut(s)	350, 585, 633
LweI	GCATC	1 cut(s)	840
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	5 cut(s)	13, 92, 202, 277, 478
MalI	GATC	2 cut(s)	265, 654
MboI	GATC	2 cut(s)	263, 652
MboII	GAAGA	1 cut(s)	11
MfeI	CAATTG	1 cut(s)	533
MluCI	AATT	7 cut(s)	208, 328, 417, 505, 533, 681, 811
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	2 cut(s)	194, 752
MnlI	CCTC	6 cut(s)	29, 197, 235, 295, 361, 562
MseI	TTAA	2 cut(s)	326, 662
MslI	CAYNNNNRTG	1 cut(s)	766
MspCI	CTTAAG	1 cut(s)	661
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	53, 755
MunI	CAATTG	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	755
MwoI	GCNNNNNNNGC	2 cut(s)	598, 627
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	263, 652
NlaIII	CATG	4 cut(s)	184, 278, 474, 824
NmuCI	GTSAC	2 cut(s)	13, 478
NspI	RCATGY	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	340, 575, 623
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	636
Psp1406I	AACGTT	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	753
PspEI	GGTNACC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	753
PspPI	GGNCC	4 cut(s)	184, 222, 248, 293
RsaI	GTAC	5 cut(s)	254, 583, 671, 718, 743
RsaNI	GTAC	5 cut(s)	253, 582, 670, 717, 742
RseI	CAYNNNNRTG	1 cut(s)	766
SaqAI	TTAA	2 cut(s)	326, 662
SatI	GCNGC	3 cut(s)	339, 574, 622
Sau3AI	GATC	2 cut(s)	263, 652
Sau96I	GGNCC	4 cut(s)	184, 222, 248, 293
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	2 cut(s)	53, 755
SfaNI	GCATC	1 cut(s)	840
SinI	GGWCC	2 cut(s)	184, 293
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
Sse9I	AATT	7 cut(s)	208, 328, 417, 505, 533, 681, 811
SsiI	CCGC	2 cut(s)	628, 824
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	51, 753
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	2 cut(s)	121, 495
TasI	AATT	7 cut(s)	208, 328, 417, 505, 533, 681, 811
TatI	WGTACW	3 cut(s)	581, 669, 716
Tru1I	TTAA	2 cut(s)	326, 662
Tru9I	TTAA	2 cut(s)	326, 662
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	13, 478
TseI	GCWGC	3 cut(s)	338, 573, 621
Tsp45I	GTSAC	2 cut(s)	13, 478
TspDTI	ATGAA	1 cut(s)	809
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	661
VpaK11BI	GGWCC	2 cut(s)	184, 293
XapI	RAATTY	1 cut(s)	681
XceI	RCATGY	1 cut(s)	278
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.