Prupe.4G166300_v2.0.a1

Epidermis-specific secreted glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
9646541 .. 9647337
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G166300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 672 bp
ATGGGACATGCTAGGTACGACGTGTATCGGGTTTGGGATGCGAACCGAGGAAACCCGGTTGGCGAAAATGCTACCCTGGCATTTGGGACCGATGGAAACCGTCTCTTGGCCGACGCCGATGGCCGAGTGGCTTGGCAAACTAACACTGCCAACAAAGATGCGGTGGTCCTTCATTGCTCAAAGGGCAATTTTGTTTGGCAAAGCTTTAATTACCCAACAGACACCTTATTGGTGGGCCAAGCTTTGAGGGCTGGGTCAATGAGCAATAAACTTGTGATCTGGGCCTCAGAGAAGGATAACTCAAATGGGCCCTACATCTTGGTGTTGGACAACGTGGCATTGAGCTTCCAGCCCACGTCGGAATTAGATGAGGCTTATGCTTTTTCCATAAGCTTAAAGCAAACTCGCATGTCTTCCCTAATAGGACCTGAAATTCTAGCTAGACCCAAATACCATAGTACATTCTCATTTTTTAGGCTTGGATTTGATGGAAATCTTAGGGTTTACACTTGCCGGAGCGATGTGGGAAATTTGGGGAAAATAGCTTCCATTACCAAAGTTGATGGGGTTGATCACTTCATGAGCAAGTTCTTCACTGCGGGAGTTGCTATGAAGGAGAAGGATTGTGCTAGCAAGTGTACTTTGGACTGCAAGTGTTTGGGCTACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 S_locus_glycop

Protein Analysis

224

Amino Acids

24.6

Weight (kDa)

8.17

Isoelectric Point (pI)

24.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 161, 599
AcoI YGGCCR 2 cut(s) 108, 121
AcsI RAATTY 2 cut(s) 432, 529
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 3 cut(s) 17, 460, 640
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 21
AjiI CACGTC 2 cut(s) 22, 357
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 6 cut(s) 204, 242, 345, 393, 440, 545
AluI AGCT 6 cut(s) 204, 242, 345, 393, 440, 545
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 5 cut(s) 108, 121, 235, 282, 308
ApaI GGGCCC 1 cut(s) 312
ApoI RAATTY 2 cut(s) 432, 529
AspS9I GGNCC 7 cut(s) 87, 166, 235, 282, 308, 309, 425
AsuC2I CCSGG 1 cut(s) 56
AsuNHI GCTAGC 1 cut(s) 629
AvaII GGWCC 3 cut(s) 87, 166, 425
BaeGI GKGCMC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 405
BccI CCATC 4 cut(s) 86, 113, 482, 557
BciT130I CCWGG 1 cut(s) 77
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 4 cut(s) 12, 437, 441, 630
Bme1390I CCNGG 2 cut(s) 56, 77
Bme18I GGWCC 3 cut(s) 87, 166, 425
BmgBI CACGTC 2 cut(s) 22, 357
BmgT120I GGNCC 7 cut(s) 87, 166, 235, 282, 308, 309, 425
BmiI GGNNCC 2 cut(s) 88, 310
BmrFI CCNGG 2 cut(s) 56, 77
BmsI GCATC 2 cut(s) 28, 148
BmtI GCTAGC 1 cut(s) 633
BpiI GAAGAC 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 46, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 46, 75
BseGI GGATG 1 cut(s) 43
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 251
BshFI GGCC 5 cut(s) 110, 123, 237, 284, 310
BsiSI CCGG 2 cut(s) 56, 514
BslFI GGGAC 2 cut(s) 18, 100
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 107
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 2 cut(s) 18, 100
BsnI GGCC 5 cut(s) 110, 123, 237, 284, 310
Bsp120I GGGCCC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 276, 571
BspACI CCGC 2 cut(s) 161, 599
BspANI GGCC 5 cut(s) 110, 123, 237, 284, 310
BspCNI CTCAG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 2 cut(s) 88, 310
BspOI GCTAGC 1 cut(s) 633
BsrDI GCAATG 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 46, 75
BssMI GATC 2 cut(s) 276, 571
BssNI GRCGYC 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 2 cut(s) 286, 497
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 2 cut(s) 279, 574
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 276, 571
BstMWI GCNNNNNNNGC 4 cut(s) 77, 183, 248, 605
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 2 cut(s) 11, 412
BstSCI CCNGG 2 cut(s) 54, 75
BstSLI GKGCMC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 405
BsuRI GGCC 5 cut(s) 110, 123, 237, 284, 310
BtgZI GCGATG 1 cut(s) 534
BtrI CACGTC 2 cut(s) 22, 357
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 2 cut(s) 144, 594
BtsIMutI CAGTG 2 cut(s) 144, 594
Cac8I GCNNGC 1 cut(s) 631
CciI TCATGA 1 cut(s) 579
Cfr13I GGNCC 7 cut(s) 87, 166, 235, 282, 308, 309, 425
CseI GACGC 1 cut(s) 122
Csp6I GTAC 3 cut(s) 16, 459, 639
CviAII CATG 3 cut(s) 8, 409, 580
CviQI GTAC 3 cut(s) 16, 459, 639
DdeI CTNAG 2 cut(s) 286, 497
DpnI GATC 2 cut(s) 278, 573
DpnII GATC 2 cut(s) 276, 571
EaeI YGGCCR 2 cut(s) 108, 121
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 3 cut(s) 87, 166, 425
EcoO109I RGGNCCY 2 cut(s) 309, 425
EcoRII CCWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 3 cut(s) 11, 412, 583
FaiI YATR 7 cut(s) 9, 378, 389, 410, 456, 581, 611
FaqI GGGAC 2 cut(s) 18, 100
FatI CATG 3 cut(s) 7, 408, 579
FauI CCCGC 1 cut(s) 592
FbaI TGATCA 1 cut(s) 571
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 312
FspBI CTAG 4 cut(s) 12, 437, 441, 630
GsaI CCCAGC 1 cut(s) 255
HaeIII GGCC 5 cut(s) 110, 123, 237, 284, 310
HapII CCGG 2 cut(s) 56, 514
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 3 cut(s) 11, 412, 583
HindIII AAGCTT 3 cut(s) 202, 240, 391
HpaII CCGG 2 cut(s) 56, 514
Hpy166II GTNNAC 2 cut(s) 505, 639
Hpy188I TCNGA 2 cut(s) 289, 361
Hpy188III TCNNGA 1 cut(s) 580
Hpy8I GTNNAC 2 cut(s) 505, 639
Hpy99I CGWCG 3 cut(s) 23, 116, 361
HpyAV CCTTC 4 cut(s) 179, 286, 607, 613
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 3 cut(s) 21, 333, 356
HpyCH4V TGCA 1 cut(s) 651
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 183, 248, 605
HpyF3I CTNAG 2 cut(s) 286, 497
HpySE526I ACGT 3 cut(s) 21, 333, 356
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 3 cut(s) 11, 412, 583
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 2 cut(s) 276, 571
LmnI GCTCC 1 cut(s) 516
LpnPI CCDG 8 cut(s) 62, 69, 89, 237, 265, 362, 441, 527
LweI GCATC 2 cut(s) 28, 148
MaeI CTAG 4 cut(s) 12, 437, 441, 630
MaeII ACGT 3 cut(s) 21, 333, 356
MalI GATC 2 cut(s) 278, 573
MboI GATC 2 cut(s) 276, 571
MboII GAAGA 2 cut(s) 405, 583
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 5 cut(s) 187, 208, 362, 432, 529
MmeI TCCRAC 2 cut(s) 306, 339
MnlI CCTC 4 cut(s) 41, 240, 295, 364
MseI TTAA 3 cut(s) 207, 395, 670
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 2 cut(s) 56, 514
MspR9I CCNGG 2 cut(s) 56, 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 4 cut(s) 77, 183, 248, 605
NciI CCSGG 1 cut(s) 56
NdeII GATC 2 cut(s) 276, 571
NheI GCTAGC 1 cut(s) 629
NlaIII CATG 3 cut(s) 11, 412, 583
NlaIV GGNNCC 2 cut(s) 88, 310
NmeAIII GCCGAG 1 cut(s) 149
NspI RCATGY 2 cut(s) 11, 412
PagI TCATGA 1 cut(s) 579
PpuMI RGGWCCY 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 251
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 88, 310
PspOMI GGGCCC 1 cut(s) 308
PspPI GGNCC 7 cut(s) 87, 166, 235, 282, 308, 309, 425
PspPPI RGGWCCY 1 cut(s) 425
RsaI GTAC 3 cut(s) 17, 460, 640
RsaNI GTAC 3 cut(s) 16, 459, 639
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 3 cut(s) 207, 395, 670
Sau3AI GATC 2 cut(s) 276, 571
Sau96I GGNCC 7 cut(s) 87, 166, 235, 282, 308, 309, 425
ScrFI CCNGG 2 cut(s) 56, 77
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 2 cut(s) 28, 148
SinI GGWCC 3 cut(s) 87, 166, 425
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 5 cut(s) 187, 208, 362, 432, 529
SsiI CCGC 2 cut(s) 161, 599
SspMI CTAG 4 cut(s) 12, 437, 441, 630
StyD4I CCNGG 2 cut(s) 54, 75
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 3 cut(s) 24, 336, 359
TaqII GACCGA 1 cut(s) 104
TasI AATT 5 cut(s) 187, 208, 362, 432, 529
TatI WGTACW 2 cut(s) 458, 638
Tru1I TTAA 3 cut(s) 207, 395, 670
Tru9I TTAA 3 cut(s) 207, 395, 670
TscAI CASTG 2 cut(s) 151, 601
TspDTI ATGAA 3 cut(s) 161, 568, 626
TspRI CASTG 2 cut(s) 151, 601
VpaK11BI GGWCC 3 cut(s) 87, 166, 425
XapI RAATTY 2 cut(s) 432, 529
XceI RCATGY 2 cut(s) 11, 412
XspI CTAG 4 cut(s) 12, 437, 441, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.