Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9788737 .. 9790786

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G168400.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGCATCGGCATTGCAACCATAGCGATCAACCTAGCGCCGAACCTTCAGGTGGCGCTCTTCAAAGCGACGTTGCATGGTGAGCGAGAAGCACATATAGGAGATCATCATTGTCGCGAGCCGAGTATTGGCGCCTGTTTCAAAGGAGGAGAACCTTTTATTAATGGTGAAGCAGTACCATATGATCCCAAGTACCATGAGGAATGGATAAGAAACAATAGCCGAGCAAACAAGAGAAACAGACGCAATGACAGACCTCGAAATTATGACAGATCAAGGAACTTTGATAGGAGGAGGGAAAATATGCAGAACCGAGATTTTCAGAATAGGGGTCAGCCTCCTATGCCTAATCAAGCTGGGCAAAATCCTGGGCCTAACATGCCTGGACCTGCCAACAACATGAGGACTCCCAACAATATGGGGCCCCCGCCCCCCAACGCGGGTCCAATGCCTCCCCACAACAACATGGGTCCAAACTACAGTAATGTGCAGCAGCCAAACAACTGGAGTGGTGGGCAGCCCAACAACAATAGCAATCAGATACCTCATAATTATAATCAGATGCCGCCACCACCACCTAACTACAATCAGATGCCCCCTAACAACATGGGAGGTGTACCGCCAAACAACATGAGAGGGGTGCCACCAAATAACATGGGAGGAGTGTCCCTACCGCCTAATGCAGGATGGGGGGGTCCTGGGCAATTCCAAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.49

Weight (kDa)

9.85

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
Acc36I	ACCTGC	1 cut(s)	397
AccB1I	GGYRCC	2 cut(s)	131, 640
AccII	CGCG	2 cut(s)	117, 440
AciI	CCGC	5 cut(s)	428, 440, 566, 620, 674
AclWI	GGATC	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	3 cut(s)	177, 194, 618
AfiI	CCNNNNNNNGG	5 cut(s)	52, 128, 439, 440, 683
AgsI	TTSAA	2 cut(s)	64, 142
AjnI	CCWGG	3 cut(s)	367, 382, 697
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	2 cut(s)	371, 422
ApaI	GGGCCC	1 cut(s)	426
ApeKI	GCWGC	3 cut(s)	490, 493, 517
AseI	ATTAAT	1 cut(s)	162
AspLEI	GCGC	3 cut(s)	40, 58, 134
AspS9I	GGNCC	7 cut(s)	371, 386, 422, 423, 443, 470, 695
AsuHPI	GGTGA	2 cut(s)	92, 179
AvaII	GGWCC	4 cut(s)	386, 443, 470, 695
BaeGI	GKGCMC	1 cut(s)	426
BanI	GGYRCC	2 cut(s)	131, 640
BanII	GRGCYC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	502, 505, 529
BccI	CCATC	1 cut(s)	681
BciT130I	CCWGG	3 cut(s)	369, 384, 699
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	3 cut(s)	41, 59, 135
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	4 cut(s)	491, 494, 518, 566
BlsI	GCNGC	4 cut(s)	492, 495, 519, 567
Bme1390I	CCNGG	3 cut(s)	369, 384, 699
Bme18I	GGWCC	4 cut(s)	386, 443, 470, 695
BmgT120I	GGNCC	7 cut(s)	371, 386, 422, 423, 443, 470, 695
BmiI	GGNNCC	8 cut(s)	133, 423, 424, 425, 444, 471, 642, 696
BmrFI	CCNGG	3 cut(s)	369, 384, 699
BmsI	GCATC	3 cut(s)	15, 552, 582
BpmI	CTGGAG	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	368, 698
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 128, 439, 440, 683
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	2 cut(s)	12, 253
BseBI	CCWGG	3 cut(s)	369, 384, 699
BseDI	CCNNGG	2 cut(s)	368, 698
BseGI	GGATG	1 cut(s)	692
BseLI	CCNNNNNNNGG	5 cut(s)	52, 128, 439, 440, 683
BseMI	GCAATG	2 cut(s)	12, 253
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	3 cut(s)	162, 307, 675
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	3 cut(s)	502, 505, 529
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	509
Bsh1236I	CGCG	2 cut(s)	117, 440
BshFI	GGCC	2 cut(s)	373, 424
BshNI	GGYRCC	2 cut(s)	131, 640
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	5 cut(s)	52, 128, 439, 440, 683
BsmFI	GGGAC	1 cut(s)	652
BsnI	GGCC	2 cut(s)	373, 424
Bsp120I	GGGCCC	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	27, 103, 184, 272
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	5 cut(s)	428, 440, 566, 620, 674
BspANI	GGCC	2 cut(s)	373, 424
BspFNI	CGCG	2 cut(s)	117, 440
BspLI	GGNNCC	8 cut(s)	133, 423, 424, 425, 444, 471, 642, 696
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	65
BspT107I	GGYRCC	2 cut(s)	131, 640
BsrDI	GCAATG	2 cut(s)	12, 253
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	368, 698
BssMI	GATC	4 cut(s)	27, 103, 184, 272
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	3 cut(s)	369, 384, 699
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	119
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstF5I	GGATG	1 cut(s)	692
BstFNI	CGCG	2 cut(s)	117, 440
BstH2I	RGCGCY	3 cut(s)	41, 59, 135
BstHHI	GCGC	3 cut(s)	40, 58, 134
BstKTI	GATC	4 cut(s)	30, 106, 187, 275
BstMBI	GATC	4 cut(s)	27, 103, 184, 272
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 82, 343, 379
BstNI	CCWGG	3 cut(s)	369, 384, 699
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	3 cut(s)	367, 382, 697
BstSFI	CTRYAG	1 cut(s)	478
BstSLI	GKGCMC	1 cut(s)	426
BstUI	CGCG	2 cut(s)	117, 440
BstV1I	GCAGC	3 cut(s)	502, 505, 529
BstXI	CCANNNNNNTGG	2 cut(s)	418, 504
BsuRI	GGCC	2 cut(s)	373, 424
BtsCI	GGATG	1 cut(s)	692
BtuMI	TCGCGA	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	3 cut(s)	40, 58, 134
Cfr13I	GGNCC	7 cut(s)	371, 386, 422, 423, 443, 470, 695
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	3 cut(s)	176, 193, 617
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	8 cut(s)	77, 197, 379, 400, 466, 607, 631, 655
CviJI	RGCY	8 cut(s)	121, 222, 337, 356, 373, 424, 496, 520
CviKI_1	RGCY	8 cut(s)	121, 222, 337, 356, 373, 424, 496, 520
CviQI	GTAC	3 cut(s)	176, 193, 617
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	4 cut(s)	29, 105, 186, 274
DpnII	GATC	4 cut(s)	27, 103, 184, 272
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	4 cut(s)	386, 443, 470, 695
Eco57I	CTGAAG	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoO109I	RGGNCCY	3 cut(s)	422, 423, 695
EcoRII	CCWGG	3 cut(s)	367, 382, 697
EcoT38I	GRGCYC	1 cut(s)	426
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
FaeI	CATG	8 cut(s)	80, 200, 382, 403, 469, 610, 634, 658
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	8 cut(s)	76, 196, 378, 399, 465, 606, 630, 654
FauI	CCCGC	2 cut(s)	433, 435
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	491, 494, 518, 566
FokI	GGATG	1 cut(s)	699
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	4 cut(s)	491, 494, 518, 566
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	3 cut(s)	39, 57, 133
GluI	GCNGC	4 cut(s)	491, 494, 518, 566
GsaI	CCCAGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	526
HaeII	RGCGCY	3 cut(s)	41, 59, 135
HaeIII	GGCC	2 cut(s)	373, 424
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	3 cut(s)	40, 58, 134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	8 cut(s)	80, 200, 382, 403, 469, 610, 634, 658
Hin6I	GCGC	3 cut(s)	38, 56, 132
HinP1I	GCGC	3 cut(s)	38, 56, 132
HinfI	GANTC	1 cut(s)	406
HphI	GGTGA	2 cut(s)	92, 179
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	4 cut(s)	324, 540, 561, 591
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	617
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	5 cut(s)	17, 76, 307, 490, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 82, 343, 379
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	8 cut(s)	80, 200, 382, 403, 469, 610, 634, 658
HspAI	GCGC	3 cut(s)	38, 56, 132
KasI	GGCGCC	1 cut(s)	131
Kzo9I	GATC	4 cut(s)	27, 103, 184, 272
LguI	GCTCTTC	1 cut(s)	65
Lsp1109I	GCAGC	3 cut(s)	502, 505, 529
LweI	GCATC	3 cut(s)	15, 552, 582
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	71
MalI	GATC	4 cut(s)	29, 105, 186, 274
MboI	GATC	4 cut(s)	27, 103, 184, 272
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	3 cut(s)	262, 550, 704
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	400
MseI	TTAA	1 cut(s)	162
MspR9I	CCNGG	3 cut(s)	369, 384, 699
MvaI	CCWGG	3 cut(s)	369, 384, 699
MvnI	CGCG	2 cut(s)	117, 440
MwoI	GCNNNNNNNGC	4 cut(s)	23, 82, 343, 379
NarI	GGCGCC	1 cut(s)	132
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	4 cut(s)	27, 103, 184, 272
NlaIII	CATG	8 cut(s)	80, 200, 382, 403, 469, 610, 634, 658
NlaIV	GGNNCC	8 cut(s)	133, 423, 424, 425, 444, 471, 642, 696
NmeAIII	GCCGAG	2 cut(s)	147, 248
NruI	TCGCGA	1 cut(s)	117
NspI	RCATGY	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	492, 495, 519, 567
PleI	GAGTC	1 cut(s)	400
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	695
PshBI	ATTAAT	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	3 cut(s)	367, 382, 697
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	3 cut(s)	367, 382, 697
PspN4I	GGNNCC	8 cut(s)	133, 423, 424, 425, 444, 471, 642, 696
PspOMI	GGGCCC	1 cut(s)	422
PspPI	GGNCC	7 cut(s)	371, 386, 422, 423, 443, 470, 695
PspPPI	RGGWCCY	1 cut(s)	695
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	3 cut(s)	177, 194, 618
RsaNI	GTAC	3 cut(s)	176, 193, 617
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	4 cut(s)	491, 494, 518, 566
Sau3AI	GATC	4 cut(s)	27, 103, 184, 272
Sau96I	GGNCC	7 cut(s)	371, 386, 422, 423, 443, 470, 695
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	3 cut(s)	369, 384, 699
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	3 cut(s)	15, 552, 582
SfcI	CTRYAG	1 cut(s)	478
SfoI	GGCGCC	1 cut(s)	133
SinI	GGWCC	4 cut(s)	386, 443, 470, 695
Sse9I	AATT	3 cut(s)	262, 550, 704
SsiI	CCGC	5 cut(s)	428, 440, 566, 620, 674
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	367, 382, 697
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	259
TasI	AATT	3 cut(s)	262, 550, 704
TauI	GCSGC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	3 cut(s)	490, 493, 517
VpaK11BI	GGWCC	4 cut(s)	386, 443, 470, 695
VspI	ATTAAT	1 cut(s)	162
XagI	CCTNNNNNAGG	1 cut(s)	681
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.