Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9847653 .. 9849513

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G168800.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAAGATGGAATTGCACCAAAGAAGTGAGCTATTGGATTTTTCTTCCAATCTATTTAATGGCAACCTTGCTCCTGGGTTATGGAAGTGTTCTGAACTGCAGGATTACTTCCAAAAGATATCTATAATGCTACCAAACTTTAAGAAATTGCATTACCCTCTCAATTCACTACTTGGAGCCATTAGTGATAAAATTGTCAACCTCACCAACCTTGCCATCCTTGACCTCGCCTTTAATCATTTTGGCGGCAAGCTTACTCCCAATTTGGGGGAGCTCTCCAAATTGAAATTTATGACCCTTGATTTCAACAATTTAGAAGGTCCTTTGCCCCAGTCTTTGATGAATTGCACAAACCTTGTAGAATGGCGTTTGGGATCCAACGACTTGGAAGGAGATATCTCCATGCTTGATTTTTCCAGACTTACTCAACTTACTAAACTTGACCTAAGGATGAATAACTTCACTGGTATGATTCCAGTAAGCCTTTATGCATGTCGGTCTTTAAAAGCCATTCGATTGTCTAGAAATCATCTAGAGGGACAAATAGAAGCCGAGATTCTTTCATTGAAATCCTTGTCCTTCTTCTCGCTTGCTGTAATATCTCACATCGACCAACGGAGAGGGGGTGAATTTCCACAGCAACTTTGTCGACTACCAAGGTTGGTTTATGAACCTATTGCATCTCAAGGAGACCAATATGAATTTGAATTGCCTGTCTTAGGCAACGGCAGCTTCTGTTCAACTCTACCACAAAAATTGTATTTTTATCTAGCAACGATAGACCTATCTAAGAATAACATTGTTGGTGATACACGTACTGATATCGGCCAATTGCAGCTTCTCTACATGTTGGTTCTTGACTCCAACAACTTCTCTAATATCATTCCAGACCAAATATCTAACTTAAAAAGTTTAAAGGTTTTGAAACTCTCCATGAATCACTTGTCTGGAATAATGCCATCATCATTGGCAAGCCTTAATTTCTTGAAAGAATTTAAGGCCTCATACAATAACCTCAAAGGACCAATACCAACAGGCACCCAGCTCCAAAGCTTCAATGCTTCTGCCTTTGAGGGGAATCCAGATTTTTGTGGTGCCCCACTCCCAAATAAATGCGGACCAAGTAGGTGCATTGATGCAGATAATAAGAACAATAAAGATGTGAACAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0043207 GO:0045087 GO:0048507 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

392

Amino Acids

43.8

Weight (kDa)

6.99

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1037, 1094
AccI	GTMKAC	1 cut(s)	649
AciI	CCGC	2 cut(s)	246, 1116
AclWI	GGATC	2 cut(s)	369, 382
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	4 cut(s)	287, 629, 701, 992
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	4 cut(s)	266, 267, 719, 1074
AflIII	ACRYGT	2 cut(s)	812, 846
AgsI	TTSAA	8 cut(s)	286, 307, 568, 707, 741, 925, 988, 1057
AjnI	CCWGG	1 cut(s)	73
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AluBI	AGCT	7 cut(s)	31, 253, 274, 732, 838, 1045, 1053
AluI	AGCT	7 cut(s)	31, 253, 274, 732, 838, 1045, 1053
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	2 cut(s)	369, 382
AlwNI	CAGNNNCTG	1 cut(s)	735
AoxI	GGCC	2 cut(s)	826, 999
ApeKI	GCWGC	2 cut(s)	729, 835
ApoI	RAATTY	4 cut(s)	287, 629, 701, 992
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	3 cut(s)	320, 1022, 1118
AsuHPI	GGTGA	3 cut(s)	196, 638, 818
AvaII	GGWCC	3 cut(s)	320, 1022, 1118
AxyI	CCTNAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	1099
BamHI	GGATCC	1 cut(s)	374
BanI	GGYRCC	2 cut(s)	1037, 1094
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	741, 847
BccI	CCATC	2 cut(s)	224, 967
BceAI	ACGGC	1 cut(s)	742
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	3 cut(s)	522, 533, 770
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	3 cut(s)	247, 730, 836
BlsI	GCNGC	3 cut(s)	248, 731, 837
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	3 cut(s)	320, 1022, 1118
BmgT120I	GGNCC	3 cut(s)	320, 1022, 1118
BmiI	GGNNCC	4 cut(s)	178, 376, 1039, 1096
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	2 cut(s)	689, 1126
BmuI	ACTGGG	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	669
BsaAI	YACGTR	1 cut(s)	815
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	74, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	4 cut(s)	266, 267, 719, 1074
Bse1I	ACTGG	3 cut(s)	331, 469, 476
Bse21I	CCTNAGG	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	74, 656
BseGI	GGATG	2 cut(s)	216, 456
BseLI	CCNNNNNNNGG	4 cut(s)	266, 267, 719, 1074
BseNI	ACTGG	3 cut(s)	331, 469, 476
BseSI	GKGCMC	1 cut(s)	1099
BseXI	GCAGC	2 cut(s)	741, 847
BseYI	CCCAGC	1 cut(s)	1041
BshFI	GGCC	2 cut(s)	828, 1001
BshNI	GGYRCC	2 cut(s)	1037, 1094
BsiHKAI	GWGCWC	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	4 cut(s)	266, 267, 719, 1074
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	828, 1001
Bso31I	GGTCTC	1 cut(s)	684
Bsp1286I	GDGCHC	2 cut(s)	276, 1099
Bsp143I	GATC	1 cut(s)	374
BspACI	CCGC	2 cut(s)	246, 1116
BspANI	GGCC	2 cut(s)	828, 1001
BspLI	GGNNCC	4 cut(s)	178, 376, 1039, 1096
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	2 cut(s)	369, 382
BspT107I	GGYRCC	2 cut(s)	1037, 1094
BspTNI	GGTCTC	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	331, 469, 476
BssECI	CCNNGG	2 cut(s)	74, 656
BssMI	GATC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	815
BstC8I	GCNNGC	3 cut(s)	251, 591, 973
BstDEI	CTNAG	3 cut(s)	446, 718, 789
BstENI	CCTNNNNNAGG	1 cut(s)	717
BstF5I	GGATG	2 cut(s)	216, 456
BstKTI	GATC	1 cut(s)	377
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	1 cut(s)	729
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	495, 850
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	98
BstSLI	GKGCMC	1 cut(s)	1099
BstV1I	GCAGC	2 cut(s)	741, 847
BstX2I	RGATCY	1 cut(s)	374
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	828, 1001
BtsCI	GGATG	2 cut(s)	216, 456
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	3 cut(s)	251, 591, 973
CaiI	CAGNNNCTG	1 cut(s)	735
Cfr13I	GGNCC	3 cut(s)	320, 1022, 1118
Csp6I	GTAC	1 cut(s)	816
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
CviAII	CATG	4 cut(s)	403, 492, 847, 934
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	3 cut(s)	446, 718, 789
DpnI	GATC	1 cut(s)	376
DpnII	GATC	1 cut(s)	374
DraI	TTTAAA	2 cut(s)	504, 915
EaeI	YGGCCR	1 cut(s)	826
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	656
Eco147I	AGGCCT	1 cut(s)	1001
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	684
Eco32I	GATATC	3 cut(s)	120, 397, 823
Eco47I	GGWCC	3 cut(s)	320, 1022, 1118
Eco53kI	GAGCTC	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	717
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	73
EcoRV	GATATC	3 cut(s)	120, 397, 823
EcoT14I	CCWWGG	1 cut(s)	656
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	4 cut(s)	406, 495, 850, 937
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	4 cut(s)	402, 491, 846, 933
FblI	GTMKAC	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	247, 730, 836
FokI	GGATG	2 cut(s)	203, 463
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	247, 730, 836
FspBI	CTAG	3 cut(s)	522, 533, 770
GluI	GCNGC	3 cut(s)	247, 730, 836
GsaI	CCCAGC	1 cut(s)	1045
HaeIII	GGCC	2 cut(s)	828, 1001
Hin1II	CATG	4 cut(s)	406, 495, 850, 937
HincII	GTYRAC	2 cut(s)	199, 650
HindII	GTYRAC	2 cut(s)	199, 650
HindIII	AAGCTT	2 cut(s)	251, 1051
HinfI	GANTC	5 cut(s)	472, 556, 860, 937, 1078
HphI	GGTGA	3 cut(s)	196, 638, 818
Hpy166II	GTNNAC	3 cut(s)	199, 650, 1165
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	8 cut(s)	417, 522, 533, 857, 887, 948, 985, 1082
Hpy8I	GTNNAC	3 cut(s)	199, 650, 1165
HpyAV	CCTTC	3 cut(s)	311, 383, 589
HpyCH4IV	ACGT	1 cut(s)	814
HpyCH4V	TGCA	9 cut(s)	16, 100, 151, 348, 491, 680, 835, 1131, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	729
HpyF3I	CTNAG	3 cut(s)	446, 718, 789
HpySE526I	ACGT	1 cut(s)	814
Hsp92II	CATG	4 cut(s)	406, 495, 850, 937
Kzo9I	GATC	1 cut(s)	374
LmnI	GCTCC	4 cut(s)	76, 176, 271, 1050
Lsp1109I	GCAGC	2 cut(s)	741, 847
LweI	GCATC	2 cut(s)	689, 1126
MaeI	CTAG	3 cut(s)	522, 533, 770
MaeII	ACGT	1 cut(s)	814
MalI	GATC	1 cut(s)	376
MboI	GATC	1 cut(s)	374
MboII	GAAGA	3 cut(s)	16, 36, 574
MfeI	CAATTG	1 cut(s)	830
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	2 cut(s)	276, 1099
MlyI	GAGTC	1 cut(s)	854
MmeI	TCCRAC	2 cut(s)	402, 888
MnlI	CCTC	8 cut(s)	168, 212, 236, 529, 614, 1012, 1025, 1066
Mph1103I	ATGCAT	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	9 cut(s)	57, 141, 234, 503, 905, 914, 978, 996, 1174
MslI	CAYNNNNRTG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	830
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	729
NdeII	GATC	1 cut(s)	374
NlaIII	CATG	4 cut(s)	406, 495, 850, 937
NlaIV	GGNNCC	4 cut(s)	178, 376, 1039, 1096
NmeAIII	GCCGAG	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	2 cut(s)	495, 850
PceI	AGGCCT	1 cut(s)	1001
PciI	ACATGT	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	4 cut(s)	472, 556, 937, 1078
PkrI	GCNGC	3 cut(s)	248, 731, 837
PleI	GAGTC	1 cut(s)	854
PpsI	GAGTC	1 cut(s)	854
Ppu21I	YACGTR	1 cut(s)	815
PpuMI	RGGWCCY	1 cut(s)	320
PscI	ACATGT	1 cut(s)	846
Psp124BI	GAGCTC	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	1041
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	4 cut(s)	178, 376, 1039, 1096
PspPI	GGNCC	3 cut(s)	320, 1022, 1118
PspPPI	RGGWCCY	1 cut(s)	320
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	735
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	276
SalI	GTCGAC	1 cut(s)	648
SaqAI	TTAA	9 cut(s)	57, 141, 234, 503, 905, 914, 978, 996, 1174
SatI	GCNGC	3 cut(s)	247, 730, 836
Sau3AI	GATC	1 cut(s)	374
Sau96I	GGNCC	3 cut(s)	320, 1022, 1118
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	2 cut(s)	276, 1099
SfaNI	GCATC	2 cut(s)	689, 1126
SfcI	CTRYAG	1 cut(s)	98
SinI	GGWCC	3 cut(s)	320, 1022, 1118
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
SseBI	AGGCCT	1 cut(s)	1001
SsiI	CCGC	2 cut(s)	246, 1116
SspMI	CTAG	3 cut(s)	522, 533, 770
SstI	GAGCTC	1 cut(s)	276
StuI	AGGCCT	1 cut(s)	1001
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	656
TaiI	ACGT	1 cut(s)	817
TaqI	TCGA	3 cut(s)	514, 609, 649
TaqII	GACCGA	1 cut(s)	486
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	4 cut(s)	472, 556, 937, 1078
Tru1I	TTAA	9 cut(s)	57, 141, 234, 503, 905, 914, 978, 996, 1174
Tru9I	TTAA	9 cut(s)	57, 141, 234, 503, 905, 914, 978, 996, 1174
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	2 cut(s)	729, 835
TspDTI	ATGAA	7 cut(s)	17, 356, 467, 552, 684, 714, 950
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	3 cut(s)	320, 1022, 1118
XagI	CCTNNNNNAGG	1 cut(s)	717
XapI	RAATTY	4 cut(s)	287, 629, 701, 992
XbaI	TCTAGA	2 cut(s)	521, 532
XceI	RCATGY	2 cut(s)	495, 850
XmiI	GTMKAC	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	3 cut(s)	522, 533, 770
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.