Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10592742 .. 10595666

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G178600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACATGGCAATCCAAATTTCTTCATACTTCAATGGTCTTCTCAGTGATTGCCATTGTTTTTCATATTGGCATCACATATGGTTTGGTACATTGGAGAGCTCTTGGTTTCTTGGGAGCTCCACTTGCAACCTCAATTTCTCCATGTTTATCTGTTCTTATGTTGGCCTGCAATGTCAGTTGTACAAATAGTTTTGAGCGTACGTGGGAAGGATTTTCATTCGAATCTTTCAATTATATCCTCACTGGCTTAAAACTGGCCCTCCCCTCTGGAACAATGGAACGTTTGGAGGAATGGGGTTTTGACATTCTAGTGCTCTTAGGTGGATTGATGCCAAACTCTGCAAAAACAAGTTCACTACTTGCAATGTGTGTAAATACACAAGAAATTGGTTACAAAATTAGATATGGCCTCATTGCTGCTGCCAGCACAAGGGTGTCAAATGAATTGGGAGCAGGCAATCCAGATAGAGCTAAGAATTCAATGGTTGCTGCCTCCTTCGTTGACAGCGATGCAAGTTATGCAGTATTGAGAGAGGACTTTGCTTCAATGACACCATTGCTTGCAATTTCTATAATTGTTGATTTCTGTGTGGCTAGAGGATGTGGGTGGCAACACTTGGCTGCGTATGTAAATTTGGCAACTTGTTATTTGCTTGGTATGACAATTTCTGGTCTTCTTGGATTTAAGTTGAAACTTTATGCTAAGGGCTTGTCGATTGGTATAATTTGTGGTCTCTCCTGTCAAGCAAGCACTTTTTTGTTGATTACACTGCTCAAGAAATGGACTCAATCAGATTTATCTAAAAATCCAGAGGAGGAGGAAAACCCAGTTTTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

281

Amino Acids

30.41

Weight (kDa)

6.42

Isoelectric Point (pI)

25.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	283
AcsI	RAATTY	3 cut(s)	17, 478, 634
AfaI	GTAC	3 cut(s)	90, 184, 202
AfiI	CCNNNNNNNGG	2 cut(s)	432, 835
AgsI	TTSAA	5 cut(s)	33, 232, 483, 549, 694
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	3 cut(s)	101, 119, 473
AluI	AGCT	3 cut(s)	101, 119, 473
Alw21I	GWGCWC	3 cut(s)	103, 121, 318
Alw26I	GTCTC	1 cut(s)	740
AoxI	GGCC	3 cut(s)	165, 258, 409
ApeKI	GCWGC	4 cut(s)	419, 422, 491, 623
ApoI	RAATTY	3 cut(s)	17, 478, 634
AspS9I	GGNCC	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	222
BanII	GRGCYC	2 cut(s)	103, 121
BbsI	GAAGAC	2 cut(s)	31, 668
Bbv12I	GWGCWC	3 cut(s)	103, 121, 318
BbvI	GCAGC	4 cut(s)	406, 409, 478, 610
BcoDI	GTCTC	1 cut(s)	740
BfaI	CTAG	3 cut(s)	311, 597, 841
BisI	GCNGC	4 cut(s)	420, 423, 492, 624
BlsI	GCNGC	4 cut(s)	421, 424, 493, 625
BmgT120I	GGNCC	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	824
BmsI	GCATC	3 cut(s)	81, 321, 502
BmuI	ACTGGG	1 cut(s)	824
BpiI	GAAGAC	2 cut(s)	31, 668
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu14I	TTCGAA	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	761
BsaAI	YACGTR	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	740
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 835
Bse1I	ACTGG	3 cut(s)	250, 261, 830
Bse3DI	GCAATG	4 cut(s)	178, 372, 414, 557
BseGI	GGATG	1 cut(s)	608
BseLI	CCNNNNNNNGG	2 cut(s)	432, 835
BseMI	GCAATG	4 cut(s)	178, 372, 414, 557
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	250, 261, 830
BseRI	GAGGAG	2 cut(s)	830, 833
BseXI	GCAGC	4 cut(s)	406, 409, 478, 610
BshFI	GGCC	3 cut(s)	167, 260, 411
BsiHKAI	GWGCWC	3 cut(s)	103, 121, 318
BsiWI	CGTACG	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	432, 835
BsmAI	GTCTC	1 cut(s)	740
BsnI	GGCC	3 cut(s)	167, 260, 411
Bso31I	GGTCTC	1 cut(s)	740
Bsp119I	TTCGAA	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	103, 121, 318
Bsp1407I	TGTACA	1 cut(s)	182
BspANI	GGCC	3 cut(s)	167, 260, 411
BspCNI	CTCAG	1 cut(s)	56
BspT104I	TTCGAA	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	740
BsrDI	GCAATG	4 cut(s)	178, 372, 414, 557
BsrGI	TGTACA	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	250, 261, 830
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstAUI	TGTACA	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	5 cut(s)	169, 427, 457, 564, 751
BstDEI	CTNAG	4 cut(s)	43, 319, 474, 705
BstF5I	GGATG	1 cut(s)	608
BstMAI	GTCTC	1 cut(s)	740
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 521
BstV1I	GCAGC	4 cut(s)	406, 409, 478, 610
BstV2I	GAAGAC	2 cut(s)	31, 668
BsuRI	GGCC	3 cut(s)	167, 260, 411
BtgZI	GCGATG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	608
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	3 cut(s)	51, 243, 770
Cac8I	GCNNGC	5 cut(s)	169, 427, 457, 564, 751
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	89, 183, 201
CviAII	CATG	2 cut(s)	6, 144
CviQI	GTAC	3 cut(s)	89, 183, 201
DdeI	CTNAG	4 cut(s)	43, 319, 474, 705
Ecl136II	GAGCTC	2 cut(s)	101, 119
Eco24I	GRGCYC	2 cut(s)	103, 121
Eco31I	GGTCTC	1 cut(s)	740
Eco53kI	GAGCTC	2 cut(s)	101, 119
EcoICRI	GAGCTC	2 cut(s)	101, 119
EcoRI	GAATTC	1 cut(s)	478
EcoT38I	GRGCYC	2 cut(s)	103, 121
FaeI	CATG	2 cut(s)	9, 147
FatI	CATG	2 cut(s)	5, 143
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	4 cut(s)	420, 423, 492, 624
FokI	GGATG	1 cut(s)	615
FriOI	GRGCYC	2 cut(s)	103, 121
Fsp4HI	GCNGC	4 cut(s)	420, 423, 492, 624
FspBI	CTAG	3 cut(s)	311, 597, 841
GluI	GCNGC	4 cut(s)	420, 423, 492, 624
HaeIII	GGCC	3 cut(s)	167, 260, 411
Hin1II	CATG	2 cut(s)	9, 147
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	2 cut(s)	224, 787
Hpy166II	GTNNAC	2 cut(s)	356, 505
Hpy188I	TCNGA	1 cut(s)	796
Hpy188III	TCNNGA	4 cut(s)	270, 464, 778, 812
Hpy8I	GTNNAC	2 cut(s)	356, 505
HpyAV	CCTTC	2 cut(s)	203, 508
HpyCH4IV	ACGT	2 cut(s)	203, 283
HpyCH4V	TGCA	7 cut(s)	128, 171, 344, 365, 515, 524, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 521
HpyF3I	CTNAG	4 cut(s)	43, 319, 474, 705
HpySE526I	ACGT	2 cut(s)	203, 283
Hsp92II	CATG	2 cut(s)	9, 147
LmnI	GCTCC	3 cut(s)	116, 124, 452
Lsp1109I	GCAGC	4 cut(s)	406, 409, 478, 610
LweI	GCATC	3 cut(s)	81, 321, 502
MaeI	CTAG	3 cut(s)	311, 597, 841
MaeII	ACGT	2 cut(s)	203, 283
MaeIII	GTNAC	1 cut(s)	392
MboII	GAAGA	3 cut(s)	14, 31, 668
MhlI	GDGCHC	3 cut(s)	103, 121, 318
MlyI	GAGTC	1 cut(s)	781
MseI	TTAA	2 cut(s)	251, 687
MslI	CAYNNNNRTG	2 cut(s)	311, 434
MwoI	GCNNNNNNNGC	2 cut(s)	125, 521
NdeI	CATATG	1 cut(s)	79
NlaIII	CATG	2 cut(s)	9, 147
NspV	TTCGAA	1 cut(s)	222
OliI	CACNNNNGTG	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	224
Pfl23II	CGTACG	1 cut(s)	200
PkrI	GCNGC	4 cut(s)	421, 424, 493, 625
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
Ppu21I	YACGTR	1 cut(s)	204
Psp124BI	GAGCTC	2 cut(s)	103, 121
Psp1406I	AACGTT	1 cut(s)	283
PspLI	CGTACG	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	259
RsaI	GTAC	3 cut(s)	90, 184, 202
RsaNI	GTAC	3 cut(s)	89, 183, 201
RseI	CAYNNNNRTG	2 cut(s)	311, 434
SacI	GAGCTC	2 cut(s)	103, 121
SaqAI	TTAA	2 cut(s)	251, 687
SatI	GCNGC	4 cut(s)	420, 423, 492, 624
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	781
SduI	GDGCHC	3 cut(s)	103, 121, 318
SetI	ASST	7 cut(s)	103, 121, 134, 206, 286, 325, 475
SfaNI	GCATC	3 cut(s)	81, 321, 502
SfuI	TTCGAA	1 cut(s)	222
SmiMI	CAYNNNNRTG	2 cut(s)	311, 434
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
SspMI	CTAG	3 cut(s)	311, 597, 841
SstI	GAGCTC	2 cut(s)	103, 121
TaiI	ACGT	2 cut(s)	206, 286
TaqI	TCGA	2 cut(s)	222, 716
TatI	WGTACW	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	251, 687
Tru9I	TTAA	2 cut(s)	251, 687
TscAI	CASTG	3 cut(s)	51, 250, 777
TseI	GCWGC	4 cut(s)	419, 422, 491, 623
TspDTI	ATGAA	4 cut(s)	14, 53, 207, 459
TspRI	CASTG	3 cut(s)	51, 250, 777
XapI	RAATTY	3 cut(s)	17, 478, 634
XspI	CTAG	3 cut(s)	311, 597, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.