Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10602682 .. 10605669

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G178800.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAAGTTGTTGGATGTGGAGGAGGCCAAGAAGCAGGTCTTGTTTTCACTGCCAACAACTCTCACTAATGTGATGTTTTACTTCATCACTTTGGTGTCTGTGATGTTTGCTGGCCACCTTGGTCAGCTTCAACTAGCTGCTGCAAACCTAGCCATGTCATGGGCTAGTGCCACCGGCCTTGCTGTTGTGATTGGCTTAAGTGGAGCGCTTGAGACCCTTTGTGGGCAAGCCTTTGGTGCCAGGGAGTATGGCATGTTAGGGAAGTACCTGCAAGCCTCATGCTTGATATCCTTGCTAGCTTCCTTGCTTATTTCCCCACTTTGGTTCTTTTCGGAGCCAGTTTTGATTTCGTTGTTACACCAAGACGCAGAGGCCTCAAAACTCTCTGCGGTCTTTATGAAGCTGTTCATTCCTGGATTGTTTGCATTTGGCATCCTCCAGAACGTTTTGAGATTTCTTCAAACCCAGTCTGCTGTTGTCGTCCCCTTTATATTCTCCTTCATCAGCCGCGGCCTCCACATAGGCCTCACCTATTATCTTGTCCACTTCACTCCTCTGGGCTTCAGAGGTAAATTCGAGTCTACATGGGAAGGTTTCTCCCTGGCATCATTCAGTCACGTCCCTACGGTTTTGAGGCTTGGCCTCCCTGGTGCCGCAGTGGAATGCTTGGAAGACTGGACCTTCGAGTTTTTAGTCTTCATGGCAGGAGCATTTCCACATCCAACACAGAGCACGTCCCTACTTGGGATATGTGTCAATGTGGAGTTAATTGGTTATATGGTGTCATACGGCCTCAGTGCTGCTGTCAGCACGAGAGTTTCAAACGAACTGGGAGCAGGCAATCCAAAGAAAGCTAAGAGTGCCATGACTGTGGCTCTGAAGTTCTCTGGCTTTCTTGCTTTCCTTCTTGGTCTAGCACTGACAATTGGCCACAACTTCTGGGCTGGCTTATTCGGCAGCACACCAGAAATAGTAAAAGCCTTTGCATCCATGACACCCTTGGTTGCAGTCTCTGTGATCGTTGAACCTCTACAAGGTGTTGTTTTAGGTTTGGCCGCAGGATGCGGGTGGCAAAAGTTGGTCTGCTATGTTAATCTGGCCACATATTTGGTTGGCATGGCTATTTCGGGCCTTCTTGGGCTCACGACCGAGTTACATGTCAAGGGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

391

Amino Acids

41.75

Weight (kDa)

7.65

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	25, 276
AccB1I	GGYRCC	2 cut(s)	236, 650
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	581
AccII	CGCG	1 cut(s)	510
AciI	CCGC	6 cut(s)	389, 508, 510, 654, 1056, 1065
AclI	AACGTT	1 cut(s)	444
AcoI	YGGCCR	4 cut(s)	112, 928, 1053, 1098
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	2 cut(s)	547, 899
AfaI	GTAC	1 cut(s)	266
AfeI	AGCGCT	1 cut(s)	207
AfiI	CCNNNNNNNGG	5 cut(s)	159, 222, 321, 744, 1034
AflII	CTTAAG	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	1156
AgsI	TTSAA	4 cut(s)	131, 461, 822, 1025
AjiI	CACGTC	2 cut(s)	619, 735
AjnI	CCWGG	4 cut(s)	239, 412, 600, 646
AleI	CACNNNNGTG	2 cut(s)	68, 92
AluBI	AGCT	5 cut(s)	127, 137, 299, 403, 854
AluI	AGCT	5 cut(s)	127, 137, 299, 403, 854
Alw21I	GWGCWC	1 cut(s)	734
Alw26I	GTCTC	2 cut(s)	206, 1015
AlwNI	CAGNNNCTG	1 cut(s)	1013
Aor51HI	AGCGCT	1 cut(s)	207
ApeKI	GCWGC	4 cut(s)	137, 140, 800, 957
ApoI	RAATTY	1 cut(s)	572
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	678, 1129
AsuHPI	GGTGA	1 cut(s)	520
AsuNHI	GCTAGC	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	678
BalI	TGGCCA	3 cut(s)	114, 930, 1100
BanI	GGYRCC	2 cut(s)	236, 650
BanII	GRGCYC	1 cut(s)	1143
BauI	CACGAG	1 cut(s)	811
BbsI	GAAGAC	2 cut(s)	678, 688
Bbv12I	GWGCWC	1 cut(s)	734
BbvI	GCAGC	4 cut(s)	124, 127, 787, 969
BceAI	ACGGC	1 cut(s)	805
BciT130I	CCWGG	4 cut(s)	241, 414, 602, 648
BcoDI	GTCTC	2 cut(s)	206, 1015
BfaI	CTAG	5 cut(s)	134, 149, 165, 296, 914
BfoI	RGCGCY	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	196
BfuAI	ACCTGC	2 cut(s)	25, 276
BisI	GCNGC	8 cut(s)	138, 141, 508, 511, 654, 801, 958, 1056
BlsI	GCNGC	8 cut(s)	139, 142, 509, 512, 655, 802, 959, 1057
Bme1390I	CCNGG	4 cut(s)	241, 414, 602, 648
Bme18I	GGWCC	1 cut(s)	678
BmgBI	CACGTC	2 cut(s)	619, 735
BmgT120I	GGNCC	2 cut(s)	678, 1129
BmiI	GGNNCC	3 cut(s)	238, 336, 652
BmrFI	CCNGG	4 cut(s)	241, 414, 602, 648
BmrI	ACTGGG	2 cut(s)	460, 839
BmsI	GCATC	4 cut(s)	441, 614, 995, 1052
BmtI	GCTAGC	1 cut(s)	299
BmuI	ACTGGG	2 cut(s)	460, 839
BpiI	GAAGAC	2 cut(s)	678, 688
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	6 cut(s)	118, 240, 508, 600, 646, 999
Bsc4I	CCNNNNNNNGG	5 cut(s)	159, 222, 321, 744, 1034
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	4 cut(s)	338, 466, 680, 834
BseBI	CCWGG	4 cut(s)	241, 414, 602, 648
BseDI	CCNNGG	6 cut(s)	118, 240, 508, 600, 646, 999
BseGI	GGATG	5 cut(s)	19, 432, 718, 986, 1067
BseLI	CCNNNNNNNGG	5 cut(s)	159, 222, 321, 744, 1034
BseMII	CTCAG	1 cut(s)	808
BseNI	ACTGG	4 cut(s)	338, 466, 680, 834
BseRI	GAGGAG	2 cut(s)	35, 543
BseXI	GCAGC	4 cut(s)	124, 127, 787, 969
Bsh1236I	CGCG	1 cut(s)	510
Bsh1285I	CGRYCG	1 cut(s)	1149
BshNI	GGYRCC	2 cut(s)	236, 650
BsiEI	CGRYCG	1 cut(s)	1149
BsiHKAI	GWGCWC	1 cut(s)	734
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	3 cut(s)	467, 605, 721
BslI	CCNNNNNNNGG	5 cut(s)	159, 222, 321, 744, 1034
BsmAI	GTCTC	2 cut(s)	206, 1015
BsmFI	GGGAC	3 cut(s)	467, 605, 721
BsmI	GAATGC	1 cut(s)	668
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	734, 1143
Bsp143I	GATC	1 cut(s)	1017
BspACI	CCGC	6 cut(s)	389, 508, 510, 654, 1056, 1065
BspCNI	CTCAG	1 cut(s)	807
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	3 cut(s)	238, 336, 652
BspMI	ACCTGC	2 cut(s)	25, 276
BspOI	GCTAGC	1 cut(s)	299
BspT107I	GGYRCC	2 cut(s)	236, 650
BspTI	CTTAAG	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	4 cut(s)	338, 466, 680, 834
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	6 cut(s)	118, 240, 508, 600, 646, 999
BssMI	GATC	1 cut(s)	1017
BssSI	CACGAG	1 cut(s)	811
BssT1I	CCWWGG	2 cut(s)	118, 999
Bst2BI	CACGAG	1 cut(s)	811
Bst2UI	CCWGG	4 cut(s)	241, 414, 602, 648
Bst4CI	ACNGT	2 cut(s)	628, 871
BstAFI	CTTAAG	1 cut(s)	196
BstC8I	GCNNGC	6 cut(s)	112, 228, 273, 297, 838, 946
BstDEI	CTNAG	2 cut(s)	794, 855
BstDSI	CCRYGG	1 cut(s)	508
BstENI	CCTNNNNNAGG	1 cut(s)	1032
BstF5I	GGATG	5 cut(s)	19, 432, 718, 986, 1067
BstFNI	CGCG	1 cut(s)	510
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	1020
BstMAI	GTCTC	2 cut(s)	206, 1015
BstMBI	GATC	1 cut(s)	1017
BstMCI	CGRYCG	1 cut(s)	1149
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 236, 860, 954
BstNI	CCWGG	4 cut(s)	241, 414, 602, 648
BstNSI	RCATGY	3 cut(s)	256, 1160, 1171
BstSCI	CCNGG	4 cut(s)	239, 412, 600, 646
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	4 cut(s)	124, 127, 787, 969
BstV2I	GAAGAC	2 cut(s)	678, 688
BstXI	CCANNNNNNTGG	2 cut(s)	871, 1108
BtgI	CCRYGG	1 cut(s)	508
BtrI	CACGTC	2 cut(s)	619, 735
BtsCI	GGATG	5 cut(s)	19, 432, 718, 986, 1067
BtsI	GCAGTG	2 cut(s)	47, 663
BtsIMutI	CAGTG	4 cut(s)	47, 663, 802, 917
BveI	ACCTGC	2 cut(s)	25, 276
Cac8I	GCNNGC	6 cut(s)	112, 228, 273, 297, 838, 946
CaiI	CAGNNNCTG	1 cut(s)	1013
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	678, 1129
Cfr42I	CCGCGG	1 cut(s)	511
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	794, 855
DpnI	GATC	1 cut(s)	1019
DpnII	GATC	1 cut(s)	1017
EaeI	YGGCCR	4 cut(s)	112, 928, 1053, 1098
Eco130I	CCWWGG	2 cut(s)	118, 999
Eco147I	AGGCCT	2 cut(s)	374, 525
Eco24I	GRGCYC	1 cut(s)	1143
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	678
Eco47III	AGCGCT	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	547, 899
EcoNI	CCTNNNNNAGG	1 cut(s)	1032
EcoRII	CCWGG	4 cut(s)	239, 412, 600, 646
EcoRV	GATATC	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	118, 999
EcoT38I	GRGCYC	1 cut(s)	1143
ErhI	CCWWGG	2 cut(s)	118, 999
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	3 cut(s)	467, 605, 721
FauI	CCCGC	1 cut(s)	1058
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	8 cut(s)	138, 141, 508, 511, 654, 801, 958, 1056
FokI	GGATG	5 cut(s)	26, 419, 705, 973, 1074
FriOI	GRGCYC	1 cut(s)	1143
Fsp4HI	GCNGC	8 cut(s)	138, 141, 508, 511, 654, 801, 958, 1056
FspBI	CTAG	5 cut(s)	134, 149, 165, 296, 914
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	8 cut(s)	138, 141, 508, 511, 654, 801, 958, 1056
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	1 cut(s)	209
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	544, 582
Hpy188I	TCNGA	3 cut(s)	334, 566, 879
Hpy188III	TCNNGA	2 cut(s)	439, 1144
Hpy8I	GTNNAC	2 cut(s)	544, 582
HpyAV	CCTTC	5 cut(s)	508, 584, 691, 914, 1142
HpyCH4III	ACNGT	2 cut(s)	628, 871
HpyCH4IV	ACGT	3 cut(s)	444, 618, 734
HpyCH4V	TGCA	5 cut(s)	143, 271, 425, 986, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 236, 860, 954
HpyF3I	CTNAG	2 cut(s)	794, 855
HpySE526I	ACGT	3 cut(s)	444, 618, 734
HspAI	GCGC	1 cut(s)	206
KspI	CCGCGG	1 cut(s)	511
Kzo9I	GATC	1 cut(s)	1017
LmnI	GCTCC	4 cut(s)	203, 334, 707, 833
Lsp1109I	GCAGC	4 cut(s)	124, 127, 787, 969
LweI	GCATC	4 cut(s)	441, 614, 995, 1052
MaeI	CTAG	5 cut(s)	134, 149, 165, 296, 914
MaeII	ACGT	3 cut(s)	444, 618, 734
MaeIII	GTNAC	3 cut(s)	354, 614, 1152
MalI	GATC	1 cut(s)	1019
MboI	GATC	1 cut(s)	1017
MboII	GAAGA	3 cut(s)	449, 683, 688
MfeI	CAATTG	1 cut(s)	924
MhlI	GDGCHC	2 cut(s)	734, 1143
MlsI	TGGCCA	3 cut(s)	114, 930, 1100
MluCI	AATT	3 cut(s)	572, 768, 924
MluNI	TGGCCA	3 cut(s)	114, 930, 1100
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	746
Mox20I	TGGCCA	3 cut(s)	114, 930, 1100
MroXI	GAANNNNTTC	1 cut(s)	404
MscI	TGGCCA	3 cut(s)	114, 930, 1100
MseI	TTAA	3 cut(s)	197, 767, 1092
MslI	CAYNNNNRTG	3 cut(s)	68, 92, 869
Msp20I	TGGCCA	3 cut(s)	114, 930, 1100
MspA1I	CMGCKG	1 cut(s)	510
MspCI	CTTAAG	1 cut(s)	196
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	4 cut(s)	241, 414, 602, 648
MunI	CAATTG	1 cut(s)	924
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	4 cut(s)	241, 414, 602, 648
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	4 cut(s)	149, 236, 860, 954
NdeII	GATC	1 cut(s)	1017
NheI	GCTAGC	1 cut(s)	295
NlaIV	GGNNCC	3 cut(s)	238, 336, 652
NmuCI	GTSAC	1 cut(s)	614
NspI	RCATGY	3 cut(s)	256, 1160, 1171
OliI	CACNNNNGTG	2 cut(s)	68, 92
PceI	AGGCCT	2 cut(s)	374, 525
PciI	ACATGT	1 cut(s)	1156
PctI	GAATGC	1 cut(s)	668
PdmI	GAANNNNTTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	8 cut(s)	139, 142, 509, 512, 655, 802, 959, 1057
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PscI	ACATGT	1 cut(s)	1156
Psp1406I	AACGTT	1 cut(s)	444
Psp6I	CCWGG	4 cut(s)	239, 412, 600, 646
PspGI	CCWGG	4 cut(s)	239, 412, 600, 646
PspN4I	GGNNCC	3 cut(s)	238, 336, 652
PspPI	GGNCC	2 cut(s)	678, 1129
PstNI	CAGNNNCTG	1 cut(s)	1013
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	3 cut(s)	68, 92, 869
SacII	CCGCGG	1 cut(s)	511
SaqAI	TTAA	3 cut(s)	197, 767, 1092
SatI	GCNGC	8 cut(s)	138, 141, 508, 511, 654, 801, 958, 1056
Sau3AI	GATC	1 cut(s)	1017
Sau96I	GGNCC	2 cut(s)	678, 1129
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	4 cut(s)	241, 414, 602, 648
SduI	GDGCHC	2 cut(s)	734, 1143
SfaNI	GCATC	4 cut(s)	441, 614, 995, 1052
Sfr303I	CCGCGG	1 cut(s)	511
SgrBI	CCGCGG	1 cut(s)	511
SinI	GGWCC	1 cut(s)	678
SmiMI	CAYNNNNRTG	3 cut(s)	68, 92, 869
SmlI	CTYRAG	2 cut(s)	196, 209
SmoI	CTYRAG	2 cut(s)	196, 209
Sse9I	AATT	3 cut(s)	572, 768, 924
SseBI	AGGCCT	2 cut(s)	374, 525
SsiI	CCGC	6 cut(s)	389, 508, 510, 654, 1056, 1065
SspMI	CTAG	5 cut(s)	134, 149, 165, 296, 914
StuI	AGGCCT	2 cut(s)	374, 525
StyD4I	CCNGG	4 cut(s)	239, 412, 600, 646
StyI	CCWWGG	2 cut(s)	118, 999
TaaI	ACNGT	2 cut(s)	628, 871
TaiI	ACGT	3 cut(s)	447, 621, 737
TaqI	TCGA	2 cut(s)	576, 684
TaqII	GACCGA	1 cut(s)	1163
TasI	AATT	3 cut(s)	572, 768, 924
TauI	GCSGC	4 cut(s)	510, 513, 656, 1058
Tru1I	TTAA	3 cut(s)	197, 767, 1092
Tru9I	TTAA	3 cut(s)	197, 767, 1092
TscAI	CASTG	4 cut(s)	54, 663, 802, 924
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	4 cut(s)	137, 140, 800, 957
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	6 cut(s)	17, 73, 397, 413, 490, 688
TspRI	CASTG	4 cut(s)	54, 663, 802, 924
Van91I	CCANNNNNTGG	1 cut(s)	159
Vha464I	CTTAAG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	678
XagI	CCTNNNNNAGG	1 cut(s)	1032
XapI	RAATTY	1 cut(s)	572
XceI	RCATGY	3 cut(s)	256, 1160, 1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	997
XmiI	GTMKAC	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	5 cut(s)	134, 149, 165, 296, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.