Prupe.4G186500_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
11092451 .. 11093649
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G186500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 219 bp
ATGGATAATTTTGAGTGGCTCAGTGGATACACCACAGGATTTGGTTTATATTATGTTGATCGAAAAACGCTGCACCGAACTCCAAAGCTTTCTGCAGGATGGTTTGCTAGTTTCCTCAGAAACAATAGTCACAACGACAGGGAAGAAATTAGGGCAGCTTCAGGTCATAACAATAATATTATATTTAGCCAACTGGATGCTAAAGTTGCTGAAATGTAG

Protein Analysis

73

Amino Acids

8.31

Weight (kDa)

6.82

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 144
AluBI AGCT 2 cut(s) 88, 158
AluI AGCT 2 cut(s) 88, 158
ApeKI GCWGC 2 cut(s) 70, 155
BbvI GCAGC 2 cut(s) 57, 167
BccI CCATC 1 cut(s) 93
BciVI GTATCC 1 cut(s) 20
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 93
BfuI GTATCC 1 cut(s) 20
BisI GCNGC 2 cut(s) 71, 156
BlsI GCNGC 2 cut(s) 72, 157
BmsI GCATC 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 104, 202
BseMII CTCAG 2 cut(s) 34, 130
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 57, 167
BsgI GTGCAG 1 cut(s) 56
Bsp143I GATC 1 cut(s) 58
BspCNI CTCAG 2 cut(s) 33, 129
BspMAI CTGCAG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 198
BssMI GATC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 20, 116
BstF5I GGATG 2 cut(s) 104, 202
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 57, 167
BsuI GTATCC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 104, 202
BtsIMutI CAGTG 1 cut(s) 28
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviJI RGCY 4 cut(s) 19, 88, 158, 189
CviKI_1 RGCY 4 cut(s) 19, 88, 158, 189
DdeI CTNAG 2 cut(s) 20, 116
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 144
FaiI YATR 4 cut(s) 49, 54, 168, 182
Fnu4HI GCNGC 2 cut(s) 71, 156
FokI GGATG 2 cut(s) 111, 209
Fsp4HI GCNGC 2 cut(s) 71, 156
FspBI CTAG 1 cut(s) 108
GluI GCNGC 2 cut(s) 71, 156
HindIII AAGCTT 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 73, 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 20, 116
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 5 cut(s) 21, 81, 124, 147, 179
Lsp1109I GCAGC 2 cut(s) 57, 167
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 155
MluCI AATT 2 cut(s) 7, 147
MnlI CCTC 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 72, 157
PstI CTGCAG 1 cut(s) 97
SatI GCNGC 2 cut(s) 71, 156
Sau3AI GATC 1 cut(s) 58
SetI ASST 3 cut(s) 90, 160, 166
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 93
SgeI CNNG 6 cut(s) 48, 108, 120, 151, 174, 206
Sse9I AATT 2 cut(s) 7, 147
SspI AATATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 108
TaqI TCGA 1 cut(s) 61
TasI AATT 2 cut(s) 7, 147
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 2 cut(s) 70, 155
Tsp45I GTSAC 1 cut(s) 128
TspRI CASTG 1 cut(s) 28
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.