Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11509229 .. 11510107

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G191400.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATATCCATGGGAACTGAAGTTAGCGTGTTTGATTTGGTTAACATCAAAGAAATCTGTGACCAAGTCCTCTTCCTCTCTGAGTACAGAGCTCAGTTATATGATTCTTTAAAAAACAGGATGAACACCATTGCACCAAATTTCACTGCTCTTGTTGGGGAGCTTGTTGGTGCTCACCTCATTGCCCATGGTGGTAGCTTGTTGAACCTTGCAAAGCAGCCTGGGAGCACAGTTCCGATTCTTGGAGCTAAAAAGGCCCTCTTCAGAGCACTAAAGATTAAGCATGCAACACCACAATATGGGCTTATCTACCATGCATCCTTGATTGGTCAAGCAGCACCAAAGCTCAAGGGTAAAATATCCCAATCATTTGCAGCAAAAACTGCATTGGCAATTCGATATGATGCTCTTGGAGATGACCAAGATAACATAATGCGACTGGAAAATCGGTTGAAGCATGAGCAGCTCCACCGCTGCTATCAAACTGGGCAAAAGGCCCCCTGGCAAGCCCAATATCGCTCCAGCGCAGGAAATCCAGCTCAGGCAAAGCATGGGACCCACCAGCCCGAGCAAGCCCACAGGCAGAAATTGACTGGGCTGTTGCCCTCGGGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0030515 GO:0030684 GO:0031428 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

NOP5NT Nop

Protein Analysis

206

Amino Acids

22.48

Weight (kDa)

9.63

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AciI	CCGC	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	39, 247
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	242, 299
AgsI	TTSAA	2 cut(s)	205, 454
AjnI	CCWGG	2 cut(s)	220, 500
AluBI	AGCT	7 cut(s)	92, 163, 198, 248, 346, 466, 539
AluI	AGCT	7 cut(s)	92, 163, 198, 248, 346, 466, 539
Alw21I	GWGCWC	4 cut(s)	94, 175, 230, 271
Ama87I	CYCGRG	2 cut(s)	566, 607
AoxI	GGCC	2 cut(s)	255, 495
ApeKI	GCWGC	6 cut(s)	217, 335, 374, 463, 474, 612
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	3 cut(s)	256, 496, 555
AsuHPI	GGTGA	1 cut(s)	167
AvaI	CYCGRG	2 cut(s)	566, 607
AvaII	GGWCC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	4 cut(s)	94, 175, 230, 271
BbvI	GCAGC	6 cut(s)	229, 347, 386, 461, 475, 599
BciT130I	CCWGG	2 cut(s)	222, 502
BisI	GCNGC	6 cut(s)	218, 336, 375, 464, 475, 613
BlsI	GCNGC	6 cut(s)	219, 337, 376, 465, 476, 614
Bme1390I	CCNGG	2 cut(s)	222, 502
Bme18I	GGWCC	1 cut(s)	555
BmeT110I	CYCGRG	2 cut(s)	566, 607
BmgT120I	GGNCC	3 cut(s)	256, 496, 555
BmiI	GGNNCC	3 cut(s)	498, 556, 557
BmrFI	CCNGG	2 cut(s)	222, 502
BmrI	ACTGGG	2 cut(s)	495, 603
BmsI	GCATC	2 cut(s)	326, 394
BmuI	ACTGGG	2 cut(s)	495, 603
BpmI	CTGGAG	1 cut(s)	505
Bpu10I	CCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	5 cut(s)	9, 187, 221, 500, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 299
Bse1I	ACTGG	3 cut(s)	444, 490, 598
Bse3DI	GCAATG	2 cut(s)	129, 180
BseBI	CCWGG	2 cut(s)	222, 502
BseDI	CCNNGG	5 cut(s)	9, 187, 221, 500, 606
BseGI	GGATG	2 cut(s)	126, 317
BseLI	CCNNNNNNNGG	2 cut(s)	242, 299
BseMI	GCAATG	2 cut(s)	129, 180
BseMII	CTCAG	3 cut(s)	72, 107, 554
BseNI	ACTGG	3 cut(s)	444, 490, 598
BseXI	GCAGC	6 cut(s)	229, 347, 386, 461, 475, 599
BshFI	GGCC	2 cut(s)	257, 497
BsiHKAI	GWGCWC	4 cut(s)	94, 175, 230, 271
BsiHKCI	CYCGRG	2 cut(s)	566, 607
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	2 cut(s)	242, 299
BsmFI	GGGAC	1 cut(s)	568
BsnI	GGCC	2 cut(s)	257, 497
BsoBI	CYCGRG	2 cut(s)	566, 607
Bsp1286I	GDGCHC	4 cut(s)	94, 175, 230, 271
Bsp19I	CCATGG	2 cut(s)	9, 187
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	2 cut(s)	257, 497
BspCNI	CTCAG	3 cut(s)	73, 106, 553
BspLI	GGNNCC	3 cut(s)	498, 556, 557
BsrDI	GCAATG	2 cut(s)	129, 180
BsrI	ACTGG	3 cut(s)	444, 490, 598
BssECI	CCNNGG	5 cut(s)	9, 187, 221, 500, 606
BssT1I	CCWWGG	2 cut(s)	9, 187
Bst2UI	CCWGG	2 cut(s)	222, 502
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	2 cut(s)	77, 266
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	285, 507, 573
BstDEI	CTNAG	3 cut(s)	81, 93, 540
BstDSI	CCRYGG	2 cut(s)	9, 187
BstF5I	GGATG	2 cut(s)	126, 317
BstHHI	GCGC	1 cut(s)	527
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 383, 463
BstNI	CCWGG	2 cut(s)	222, 502
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	220, 500
BstV1I	GCAGC	6 cut(s)	229, 347, 386, 461, 475, 599
BsuRI	GGCC	2 cut(s)	257, 497
BtgI	CCRYGG	2 cut(s)	9, 187
BtsCI	GGATG	2 cut(s)	126, 317
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	285, 507, 573
CfoI	GCGC	1 cut(s)	527
Cfr13I	GGNCC	3 cut(s)	256, 496, 555
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	6 cut(s)	10, 188, 284, 314, 458, 551
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	81, 93, 540
DraI	TTTAAA	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	77, 266
EarI	CTCTTC	2 cut(s)	77, 266
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	9, 187
Eco24I	GRGCYC	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	39, 247
Eco88I	CYCGRG	2 cut(s)	566, 607
EcoICRI	GAGCTC	1 cut(s)	92
EcoO109I	RGGNCCY	3 cut(s)	256, 496, 555
EcoRII	CCWGG	2 cut(s)	220, 500
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	9, 187
EcoT22I	ATGCAT	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	2 cut(s)	9, 187
FaeI	CATG	6 cut(s)	13, 191, 287, 317, 461, 554
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	6 cut(s)	9, 187, 283, 313, 457, 550
Fnu4HI	GCNGC	6 cut(s)	218, 336, 375, 464, 475, 613
FokI	GGATG	2 cut(s)	133, 304
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	6 cut(s)	218, 336, 375, 464, 475, 613
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	6 cut(s)	218, 336, 375, 464, 475, 613
GsuI	CTGGAG	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	257, 497
HhaI	GCGC	1 cut(s)	527
Hin1II	CATG	6 cut(s)	13, 191, 287, 317, 461, 554
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	104, 238
HpaI	GTTAAC	1 cut(s)	43
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	82, 237, 266
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	6 cut(s)	134, 212, 287, 317, 374, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 383, 463
HpyF3I	CTNAG	3 cut(s)	81, 93, 540
Hsp92II	CATG	6 cut(s)	13, 191, 287, 317, 461, 554
HspAI	GCGC	1 cut(s)	525
KflI	GGGWCCC	1 cut(s)	555
KspAI	GTTAAC	1 cut(s)	43
LmnI	GCTCC	5 cut(s)	160, 225, 245, 471, 524
Lsp1109I	GCAGC	6 cut(s)	229, 347, 386, 461, 475, 599
LweI	GCATC	2 cut(s)	326, 394
MaeIII	GTNAC	1 cut(s)	59
MboII	GAAGA	2 cut(s)	64, 253
MhlI	GDGCHC	4 cut(s)	94, 175, 230, 271
MluCI	AATT	3 cut(s)	139, 393, 587
MnlI	CCTC	5 cut(s)	80, 86, 188, 269, 616
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	3 cut(s)	42, 110, 279
MspA1I	CMGCKG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	222, 502
MvaI	CCWGG	2 cut(s)	222, 502
MwoI	GCNNNNNNNGC	3 cut(s)	254, 383, 463
NcoI	CCATGG	2 cut(s)	9, 187
NlaIII	CATG	6 cut(s)	13, 191, 287, 317, 461, 554
NlaIV	GGNNCC	3 cut(s)	498, 556, 557
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	104, 238
PflFI	GACNNNGTC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	6 cut(s)	219, 337, 376, 465, 476, 614
PpuMI	RGGWCCY	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	220, 500
PspGI	CCWGG	2 cut(s)	220, 500
PspN4I	GGNNCC	3 cut(s)	498, 556, 557
PspPI	GGNCC	3 cut(s)	256, 496, 555
PspPPI	RGGWCCY	1 cut(s)	555
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	42, 110, 279
SatI	GCNGC	6 cut(s)	218, 336, 375, 464, 475, 613
Sau96I	GGNCC	3 cut(s)	256, 496, 555
ScrFI	CCNGG	2 cut(s)	222, 502
SduI	GDGCHC	4 cut(s)	94, 175, 230, 271
SetI	ASST	9 cut(s)	94, 165, 180, 200, 210, 250, 348, 468, 541
SfaNI	GCATC	2 cut(s)	326, 394
SinI	GGWCC	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	3 cut(s)	139, 393, 587
SsiI	CCGC	1 cut(s)	472
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	220, 500
StyI	CCWWGG	2 cut(s)	9, 187
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	397
TasI	AATT	3 cut(s)	139, 393, 587
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	104, 238
Tru1I	TTAA	3 cut(s)	42, 110, 279
Tru9I	TTAA	3 cut(s)	42, 110, 279
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	6 cut(s)	217, 335, 374, 463, 474, 612
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	555
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	287
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.