Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11618266 .. 11619548

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G192900.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGCATGCTTCCTTCCTTGTTGATATTGTCCTCTTTGGTTTCTTTCTTAATGTTATTCAAGTTGATTACTGCAGCTGACAGCATAACTTTAAACCAGTCCCTCAGTACTGATGCTGGGACTTTAACTTCTTTGGGTGAAAGATTTAAACTAGGCTTCTTTTCTCCACCCAACTCCAAGAACAGGTACTTGGGAATATGGTACAAGAGTACACCAAGCAAATTTGTGTGGGTTGCAAACAGAAACAATCCACTTACTGGTTTATATGGGAATCTGACTATCAGCAACAACGGAAACTTTGTTCTTCTCAATCAAAATGGGAGCAGCATTTGGTCTTCAAATATATCAAGAATCCCAAAAAGTCCAGTTGTACAGCTCTTGGACTCTGGAAATCTTAGCTTTGATTATCCATCTGATACATTGTTAACAGACATGAAGATAAGCTGGAACATAAACACCGGTTCAGAACGGTATTTGACATCATGGAAAAGCACTGATGATCCATCTACTGGCAACTTCTCTTATAAAATTGATATGAAAGGGTTACCACAATTAGTTGTTGTCATGGGATCAATCATAAAGTTCCGTACAGAGCAATGGAATGGAGTTCGATTCAGTGGTCTTCCCGGGCCAGCCAATTCTGCTTTCCGTCAAATCATGGGAGTTAAAGAAGATGAGTGGTATTACAAGTTTGAGCCTAATAAGAATTCAGGTTCTGTGCAGCGGCTTGTATTGAATGCTGAGAGTACTGAATGGGCTATTATAAACAGTCATCCCATTTGTATGTGTTTGCAAGGGTTCACTCCAAGGTCTCGAGAAGAATGGGAAGTGTTTAATACAACTAGTGGATGCATGAGGAGGACGCCGTTGGTTTGCCACGGTGGAGAGAGATTTTCACAGCTTCAAGAGGTGAAATTGCCTGACATGTTAGAATTTTCACTGAACAAGAGTATGAATCTTGAGGAATGTAGGGTGAAGTGCTTGATGAAATGTTCTTGTACAACTTATGCTAATTCAGATATTAGTGGAGTAGCCAGTGGTTGCATAATGTGGTTTGGGGATCTAGTTGATATTACAGAGTTCATAGATGAAGATAGTGAACAGGATATCTATATAAAATTGCCACCTTCAGAACTAGGC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

380

Amino Acids

42.58

Weight (kDa)

5.63

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	525, 764
AccB7I	CCANNNNNTGG	2 cut(s)	257, 509
AciI	CCGC	1 cut(s)	724
AclWI	GGATC	3 cut(s)	494, 577, 1068
AcsI	RAATTY	3 cut(s)	221, 706, 932
AcuI	CTGAAG	1 cut(s)	1113
AcyI	GRCGYC	1 cut(s)	863
AfaI	GTAC	8 cut(s)	109, 188, 203, 211, 372, 589, 748, 1000
AfiI	CCNNNNNNNGG	3 cut(s)	183, 257, 509
AflIII	ACRYGT	1 cut(s)	924
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	4 cut(s)	61, 339, 736, 905
AhlI	ACTAGT	1 cut(s)	842
AjuI	GAANNNNNNNTTGG	4 cut(s)	173, 205, 629, 661
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	5 cut(s)	77, 376, 399, 444, 901
AluI	AGCT	5 cut(s)	77, 376, 399, 444, 901
Alw26I	GTCTC	1 cut(s)	816
AlwI	GGATC	3 cut(s)	494, 577, 1068
AlwNI	CAGNNNCTG	1 cut(s)	716
Ama87I	CYCGRG	2 cut(s)	626, 813
AoxI	GGCC	1 cut(s)	629
ApeKI	GCWGC	3 cut(s)	74, 324, 721
ApoI	RAATTY	3 cut(s)	221, 706, 932
AsiGI	ACCGGT	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	629
AsuC2I	CCSGG	2 cut(s)	627, 628
AsuHPI	GGTGA	3 cut(s)	149, 922, 985
AvaI	CYCGRG	2 cut(s)	626, 813
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BbsI	GAAGAC	2 cut(s)	327, 614
BbvI	GCAGC	3 cut(s)	86, 336, 733
BccI	CCATC	2 cut(s)	418, 511
BceAI	ACGGC	1 cut(s)	850
BcnI	CCSGG	2 cut(s)	627, 628
BcoDI	GTCTC	1 cut(s)	816
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	4 cut(s)	152, 843, 1064, 1136
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	4 cut(s)	75, 325, 722, 725
BlsI	GCNGC	4 cut(s)	76, 326, 723, 726
BmcAI	AGTACT	2 cut(s)	109, 748
Bme1390I	CCNGG	2 cut(s)	627, 628
BmeT110I	CYCGRG	2 cut(s)	626, 813
BmgT120I	GGNCC	1 cut(s)	629
BmrFI	CCNGG	2 cut(s)	627, 628
BmsI	GCATC	2 cut(s)	103, 839
BpiI	GAAGAC	2 cut(s)	327, 614
BpuEI	CTTGAG	1 cut(s)	980
BpuMI	CCSGG	2 cut(s)	627, 628
BsaHI	GRCGYC	1 cut(s)	863
BsaI	GGTCTC	1 cut(s)	816
BsaJI	CCNNGG	3 cut(s)	626, 806, 877
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 257, 509
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	5 cut(s)	97, 262, 365, 514, 1035
Bse3DI	GCAATG	1 cut(s)	602
BseDI	CCNNGG	3 cut(s)	626, 806, 877
BseGI	GGATG	2 cut(s)	772, 854
BseLI	CCNNNNNNNGG	3 cut(s)	183, 257, 509
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	2 cut(s)	118, 732
BseNI	ACTGG	5 cut(s)	97, 262, 365, 514, 1035
BseRI	GAGGAG	1 cut(s)	871
BseXI	GCAGC	3 cut(s)	86, 336, 733
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	740
BshFI	GGCC	1 cut(s)	631
BshTI	ACCGGT	1 cut(s)	458
BsiHKCI	CYCGRG	2 cut(s)	626, 813
BsiSI	CCGG	2 cut(s)	459, 627
BslFI	GGGAC	2 cut(s)	85, 133
BslI	CCNNNNNNNGG	3 cut(s)	183, 257, 509
BsmAI	GTCTC	1 cut(s)	816
BsmFI	GGGAC	2 cut(s)	85, 133
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	1 cut(s)	631
Bso31I	GGTCTC	1 cut(s)	816
BsoBI	CYCGRG	2 cut(s)	626, 813
Bsp1407I	TGTACA	2 cut(s)	370, 998
Bsp143I	GATC	3 cut(s)	499, 569, 1060
BspACI	CCGC	1 cut(s)	724
BspANI	GGCC	1 cut(s)	631
BspCNI	CTCAG	2 cut(s)	117, 733
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	3 cut(s)	494, 577, 1068
BspTNI	GGTCTC	1 cut(s)	816
BsrDI	GCAATG	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	458
BsrGI	TGTACA	2 cut(s)	370, 998
BsrI	ACTGG	5 cut(s)	97, 262, 365, 514, 1035
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	626, 806, 877
BssMI	GATC	3 cut(s)	499, 569, 1060
BssNI	GRCGYC	1 cut(s)	863
BssT1I	CCWWGG	1 cut(s)	806
Bst4CI	ACNGT	3 cut(s)	471, 770, 881
BstACI	GRCGYC	1 cut(s)	863
BstAUI	TGTACA	2 cut(s)	370, 998
BstC8I	GCNNGC	2 cut(s)	8, 633
BstDEI	CTNAG	3 cut(s)	104, 395, 741
BstDSI	CCRYGG	1 cut(s)	877
BstEII	GGTNACC	1 cut(s)	543
BstF5I	GGATG	2 cut(s)	772, 854
BstKTI	GATC	3 cut(s)	502, 572, 1063
BstMAI	GTCTC	1 cut(s)	816
BstMBI	GATC	3 cut(s)	499, 569, 1060
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNSI	RCATGY	2 cut(s)	10, 928
BstPI	GGTNACC	1 cut(s)	543
BstSCI	CCNGG	2 cut(s)	625, 626
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	86, 336, 733
BstV2I	GAAGAC	2 cut(s)	327, 614
BstX2I	RGATCY	1 cut(s)	1060
BstYI	RGATCY	1 cut(s)	1060
BsuRI	GGCC	1 cut(s)	631
BtgI	CCRYGG	1 cut(s)	877
BtsCI	GGATG	2 cut(s)	772, 854
BtsIMutI	CAGTG	4 cut(s)	492, 622, 938, 1042
Cac8I	GCNNGC	2 cut(s)	8, 633
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	629
Cfr9I	CCCGGG	1 cut(s)	626
CseI	GACGC	1 cut(s)	871
Csp6I	GTAC	8 cut(s)	108, 187, 202, 210, 371, 588, 747, 999
CspAI	ACCGGT	1 cut(s)	458
CviAII	CATG	7 cut(s)	7, 433, 483, 565, 658, 853, 925
CviQI	GTAC	8 cut(s)	108, 187, 202, 210, 371, 588, 747, 999
DdeI	CTNAG	3 cut(s)	104, 395, 741
DpnI	GATC	3 cut(s)	501, 571, 1062
DpnII	GATC	3 cut(s)	499, 569, 1060
DraI	TTTAAA	2 cut(s)	93, 148
Eco130I	CCWWGG	1 cut(s)	806
Eco31I	GGTCTC	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	1108
Eco57I	CTGAAG	1 cut(s)	1113
Eco88I	CYCGRG	2 cut(s)	626, 813
Eco91I	GGTNACC	1 cut(s)	543
EcoO65I	GGTNACC	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	706
EcoRV	GATATC	1 cut(s)	1108
EcoT14I	CCWWGG	1 cut(s)	806
EcoT22I	ATGCAT	1 cut(s)	854
ErhI	CCWWGG	1 cut(s)	806
FaeI	CATG	7 cut(s)	10, 436, 486, 568, 661, 856, 928
FaqI	GGGAC	2 cut(s)	85, 133
FatI	CATG	7 cut(s)	6, 432, 482, 564, 657, 852, 924
Fnu4HI	GCNGC	4 cut(s)	75, 325, 722, 725
FokI	GGATG	2 cut(s)	759, 861
Fsp4HI	GCNGC	4 cut(s)	75, 325, 722, 725
FspBI	CTAG	4 cut(s)	152, 843, 1064, 1136
GluI	GCNGC	4 cut(s)	75, 325, 722, 725
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	631
HapII	CCGG	2 cut(s)	459, 627
HgaI	GACGC	1 cut(s)	871
Hin1I	GRCGYC	1 cut(s)	863
Hin1II	CATG	7 cut(s)	10, 436, 486, 568, 661, 856, 928
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	5 cut(s)	271, 351, 383, 612, 955
HpaI	GTTAAC	1 cut(s)	426
HpaII	CCGG	2 cut(s)	459, 627
HphI	GGTGA	3 cut(s)	149, 922, 985
Hpy166II	GTNNAC	4 cut(s)	212, 426, 801, 1100
Hpy188I	TCNGA	5 cut(s)	276, 415, 466, 1018, 1132
Hpy188III	TCNNGA	6 cut(s)	348, 387, 813, 815, 905, 959
Hpy8I	GTNNAC	4 cut(s)	212, 426, 801, 1100
HpyAV	CCTTC	2 cut(s)	24, 1137
HpyCH4III	ACNGT	3 cut(s)	471, 770, 881
HpyCH4V	TGCA	6 cut(s)	74, 236, 721, 793, 852, 1044
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	3 cut(s)	104, 395, 741
Hsp92I	GRCGYC	1 cut(s)	863
Hsp92II	CATG	7 cut(s)	10, 436, 486, 568, 661, 856, 928
KspAI	GTTAAC	1 cut(s)	426
Kzo9I	GATC	3 cut(s)	499, 569, 1060
LmnI	GCTCC	1 cut(s)	321
Lsp1109I	GCAGC	3 cut(s)	86, 336, 733
LweI	GCATC	2 cut(s)	103, 839
MaeI	CTAG	4 cut(s)	152, 843, 1064, 1136
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	3 cut(s)	501, 571, 1062
MboI	GATC	3 cut(s)	499, 569, 1060
MboII	GAAGA	7 cut(s)	296, 327, 448, 614, 683, 830, 1103
MflI	RGATCY	1 cut(s)	1060
MluCI	AATT	9 cut(s)	221, 528, 551, 637, 706, 914, 932, 1012, 1118
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	6 cut(s)	43, 113, 849, 852, 901, 955
Mph1103I	ATGCAT	1 cut(s)	854
MseI	TTAA	7 cut(s)	50, 92, 125, 147, 425, 666, 834
MslI	CAYNNNNRTG	1 cut(s)	782
MspA1I	CMGCKG	2 cut(s)	77, 724
MspI	CCGG	2 cut(s)	459, 627
MspR9I	CCNGG	2 cut(s)	627, 628
Mva1269I	GAATGC	1 cut(s)	742
MwoI	GCNNNNNNNGC	1 cut(s)	641
NciI	CCSGG	2 cut(s)	627, 628
NdeII	GATC	3 cut(s)	499, 569, 1060
NlaIII	CATG	7 cut(s)	10, 436, 486, 568, 661, 856, 928
NsiI	ATGCAT	1 cut(s)	854
NspI	RCATGY	2 cut(s)	10, 928
PaeI	GCATGC	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	813
PciI	ACATGT	1 cut(s)	924
PctI	GAATGC	1 cut(s)	742
PfeI	GAWTC	4 cut(s)	271, 351, 612, 955
PflMI	CCANNNNNTGG	2 cut(s)	257, 509
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	4 cut(s)	76, 326, 723, 726
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PscI	ACATGT	1 cut(s)	924
PsiI	TTATAA	2 cut(s)	525, 764
PspEI	GGTNACC	1 cut(s)	543
PspFI	CCCAGC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	629
PstI	CTGCAG	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	1060
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	8 cut(s)	109, 188, 203, 211, 372, 589, 748, 1000
RsaNI	GTAC	8 cut(s)	108, 187, 202, 210, 371, 588, 747, 999
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	7 cut(s)	50, 92, 125, 147, 425, 666, 834
SatI	GCNGC	4 cut(s)	75, 325, 722, 725
Sau3AI	GATC	3 cut(s)	499, 569, 1060
Sau96I	GGNCC	1 cut(s)	629
ScaI	AGTACT	2 cut(s)	109, 748
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	627, 628
SfaNI	GCATC	2 cut(s)	103, 839
SfcI	CTRYAG	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	813
SlaI	CTCGAG	1 cut(s)	813
SmaI	CCCGGG	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	2 cut(s)	813, 959
SmoI	CTYRAG	2 cut(s)	813, 959
SpeI	ACTAGT	1 cut(s)	842
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	9 cut(s)	221, 528, 551, 637, 706, 914, 932, 1012, 1118
SsiI	CCGC	1 cut(s)	724
SspMI	CTAG	4 cut(s)	152, 843, 1064, 1136
StyD4I	CCNGG	2 cut(s)	625, 626
StyI	CCWWGG	1 cut(s)	806
TaaI	ACNGT	3 cut(s)	471, 770, 881
TaqI	TCGA	2 cut(s)	610, 814
TasI	AATT	9 cut(s)	221, 528, 551, 637, 706, 914, 932, 1012, 1118
TatI	WGTACW	5 cut(s)	107, 209, 370, 746, 998
TauI	GCSGC	1 cut(s)	727
TfiI	GAWTC	4 cut(s)	271, 351, 612, 955
Tru1I	TTAA	7 cut(s)	50, 92, 125, 147, 425, 666, 834
Tru9I	TTAA	7 cut(s)	50, 92, 125, 147, 425, 666, 834
TscAI	CASTG	4 cut(s)	499, 622, 945, 1042
TseI	GCWGC	3 cut(s)	74, 324, 721
TspDTI	ATGAA	6 cut(s)	449, 551, 968, 1001, 1072, 1104
TspGWI	ACGGA	3 cut(s)	306, 575, 638
TspMI	CCCGGG	1 cut(s)	626
TspRI	CASTG	4 cut(s)	499, 622, 945, 1042
Van91I	CCANNNNNTGG	2 cut(s)	257, 509
XapI	RAATTY	3 cut(s)	221, 706, 932
XceI	RCATGY	2 cut(s)	10, 928
XhoI	CTCGAG	1 cut(s)	813
XmaI	CCCGGG	1 cut(s)	626
XspI	CTAG	4 cut(s)	152, 843, 1064, 1136
ZrmI	AGTACT	2 cut(s)	109, 748
Zsp2I	ATGCAT	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.