Prupe.4G194800_v2.0.a1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0020416
Physical Location & Seq
Reverse (-)
11842982 .. 11849953
6972 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G194800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 198 bp
ATGCCACCTGGAAAAGGTGGCCAAGGAAAAAGGGATTTTGGATTCGTCCATTTTGCTGAAAGGTCAAGTGCTCTGAAGGCCGTCAAAGATGCTGAGAAATATGAAATTGATGGTACGTATTTTGCATCTAATCAGGAGCTTTTTGAGAATTTAAGATCCAGTGAGATAGACCTCTCTTTTAGAAGTTGTTTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001101 GO:0002376 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009909 GO:0009987 GO:0010033 GO:0010439 GO:0010453 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010675 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031347 GO:0031348 GO:0031399 GO:0032268 GO:0032269 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0042742 GO:0042762 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043487 GO:0043488 GO:0043489 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045595 GO:0045824 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048831 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061013 GO:0061085 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071229 GO:0071310 GO:0071345 GO:0071346 GO:0071395 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098542 GO:1900376 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902275 GO:1902369 GO:1902373 GO:1902464 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903508 GO:1905933 GO:1990904 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

66

Amino Acids

7.33

Weight (kDa)

5.29

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 14
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw21I GWGCWC 1 cut(s) 73
AlwI GGATC 1 cut(s) 150
AoxI GGCC 2 cut(s) 19, 78
ApoI RAATTY 1 cut(s) 148
BalI TGGCCA 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 73
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 2 cut(s) 79, 134
BsaAI YACGTR 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 159
BshFI GGCC 2 cut(s) 21, 80
BsiHKAI GWGCWC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 14
BsnI GGCC 2 cut(s) 21, 80
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 155
BspANI GGCC 2 cut(s) 21, 80
BspCNI CTCAG 1 cut(s) 85
BspPI GGATC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 9
BstBAI YACGTR 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 93
BstENI CCTNNNNNAGG 1 cut(s) 12
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstSNI TACGTA 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 2 cut(s) 21, 80
BtsIMutI CAGTG 1 cut(s) 166
Csp6I GTAC 1 cut(s) 114
CviJI RGCY 3 cut(s) 21, 80, 139
CviKI_1 RGCY 3 cut(s) 21, 80, 139
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 19
Eco105I TACGTA 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaiI YATR 1 cut(s) 102
HaeIII GGCC 2 cut(s) 21, 80
HinfI GANTC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 116
Kzo9I GATC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 3 cut(s) 21, 119, 172
LweI GCATC 2 cut(s) 79, 134
MaeII ACGT 1 cut(s) 116
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 21
MluCI AATT 2 cut(s) 105, 148
MluNI TGGCCA 1 cut(s) 21
MnlI CCTC 1 cut(s) 182
Mox20I TGGCCA 1 cut(s) 21
MscI TGGCCA 1 cut(s) 21
MseI TTAA 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 73
SetI ASST 6 cut(s) 10, 19, 65, 119, 141, 174
SfaNI GCATC 2 cut(s) 79, 134
SgeI CNNG 6 cut(s) 20, 21, 35, 78, 146, 171
SnaBI TACGTA 1 cut(s) 117
Sse9I AATT 2 cut(s) 105, 148
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 1 cut(s) 22
TaiI ACGT 1 cut(s) 119
TasI AATT 2 cut(s) 105, 148
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 166
XagI CCTNNNNNAGG 1 cut(s) 12
XapI RAATTY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.