Prupe.4G206600_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
12889590 .. 12890104
515 bp
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UTR
Exon/CDS
Intron
Prupe.4G206600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 444 bp
ATGAACTGTAATAGCAATGAACCTATGATTTTGGAGGTGTTTGATTTGATTCTGGAAGTGGCTGTGAAGGAGAACTTAAAGGCAGAGCAGATGATCAAGAAGGTGATTGTGTTCACCACCCATCTACAACCTACTGACAGCCGCATCTCGCACGTTCAGTATGACGCACTACGGAGCATATTTGAGACAATCCGGAACAAGTTTAGGGATAAAGGTTACGGGGATGATGCGGTGCCACACATTCTGTATTTCAACGAGGAAGAGCATCCCTGGATTTGTACACAACATCCAGGCTTCACGATCATGAGTGGGAAGTGTTGCCATCCACATCCTCTGGCCACACCTGAAAGACAGGCAATCACTTTCATGGAGAAGTTAGGAAAAGATAACAAAGTTCAAATGGGAAAAATCAAAGTTGAACTACTGCTCCTACTAGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

148

Amino Acids

17.01

Weight (kDa)

6.37

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AccIII TCCGGA 1 cut(s) 192
AciI CCGC 2 cut(s) 142, 230
AcoI YGGCCR 1 cut(s) 336
AfaI GTAC 1 cut(s) 280
AgsI TTSAA 3 cut(s) 253, 398, 419
AjnI CCWGG 2 cut(s) 269, 289
AloI GAACNNNNNNTCC 2 cut(s) 411, 443
Alw26I GTCTC 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 192
AoxI GGCC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 106, 115
BalI TGGCCA 1 cut(s) 338
BanI GGYRCC 1 cut(s) 232
BccI CCATC 2 cut(s) 129, 330
BciT130I CCWGG 2 cut(s) 271, 291
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 434
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 2 cut(s) 271, 291
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 271, 291
BmsI GCATC 3 cut(s) 153, 217, 274
BsaJI CCNNGG 1 cut(s) 269
BsaWI WCCGGW 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bse3DI GCAATG 1 cut(s) 22
BseAI TCCGGA 1 cut(s) 192
BseBI CCWGG 2 cut(s) 271, 291
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 5 cut(s) 229, 265, 286, 322, 328
BseMI GCAATG 1 cut(s) 22
BshFI GGCC 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 232
BsiSI CCGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 1 cut(s) 338
Bsp13I TCCGGA 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 278
Bsp143I GATC 2 cut(s) 93, 300
BspACI CCGC 2 cut(s) 142, 230
BspANI GGCC 1 cut(s) 338
BspEI TCCGGA 1 cut(s) 192
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 234
BspQI GCTCTTC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 2 cut(s) 93, 300
Bst2UI CCWGG 2 cut(s) 271, 291
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 278
BstF5I GGATG 5 cut(s) 229, 265, 286, 322, 328
BstKTI GATC 2 cut(s) 96, 303
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 93, 300
BstNI CCWGG 2 cut(s) 271, 291
BstSCI CCNGG 2 cut(s) 269, 289
BsuRI GGCC 1 cut(s) 338
BtsCI GGATG 5 cut(s) 229, 265, 286, 322, 328
CciI TCATGA 1 cut(s) 303
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 279
CviAII CATG 2 cut(s) 304, 367
CviJI RGCY 4 cut(s) 62, 141, 294, 338
CviKI_1 RGCY 4 cut(s) 62, 141, 294, 338
CviQI GTAC 1 cut(s) 279
DpnI GATC 2 cut(s) 95, 302
DpnII GATC 2 cut(s) 93, 300
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 269, 289
FaeI CATG 2 cut(s) 307, 370
FaiI YATR 5 cut(s) 26, 162, 179, 305, 368
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 2 cut(s) 303, 366
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 5 cut(s) 236, 252, 273, 309, 315
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 434
GluI GCNGC 1 cut(s) 142
HaeIII GGCC 1 cut(s) 338
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 173
Hin1II CATG 2 cut(s) 307, 370
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 193
HphI GGTGA 2 cut(s) 106, 115
Hpy166II GTNNAC 2 cut(s) 114, 281
Hpy188III TCNNGA 5 cut(s) 53, 97, 193, 298, 304
Hpy8I GTNNAC 2 cut(s) 114, 281
HpyAV CCTTC 2 cut(s) 61, 94
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 307, 370
Kpn2I TCCGGA 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 2 cut(s) 93, 300
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 2 cut(s) 174, 432
LpnPI CCDG 9 cut(s) 38, 206, 256, 276, 283, 303, 320, 338, 357
LweI GCATC 3 cut(s) 153, 217, 274
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 95, 302
MboI GATC 2 cut(s) 93, 300
MboII GAAGA 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 338
MluNI TGGCCA 1 cut(s) 338
MnlI CCTC 3 cut(s) 28, 250, 342
Mox20I TGGCCA 1 cut(s) 338
MroI TCCGGA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 338
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 2 cut(s) 302, 365
Msp20I TGGCCA 1 cut(s) 338
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 2 cut(s) 271, 291
MvaI CCWGG 2 cut(s) 271, 291
NdeII GATC 2 cut(s) 93, 300
NlaIII CATG 2 cut(s) 307, 370
NlaIV GGNNCC 1 cut(s) 234
PagI TCATGA 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 269, 289
PspGI CCWGG 2 cut(s) 269, 289
PspN4I GGNNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
RseI CAYNNNNRTG 2 cut(s) 302, 365
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 2 cut(s) 93, 300
ScrFI CCNGG 2 cut(s) 271, 291
SetI ASST 7 cut(s) 25, 39, 105, 133, 156, 217, 346
SfaNI GCATC 3 cut(s) 153, 217, 274
SmiMI CAYNNNNRTG 2 cut(s) 302, 365
SsiI CCGC 2 cut(s) 142, 230
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 269, 289
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 156
TatI WGTACW 1 cut(s) 278
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 17, 33, 355
TspGWI ACGGA 1 cut(s) 187
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.