Prupe.4G210200_v2.0.a1

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
13107530 .. 13109816
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G210200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 648 bp
ATGATTTACTCTTTCCGTTGGGACAATCCCGAGTTCAGTGAGTATACCCGGCTTATCGACCGTTTTGCTGACAATGAAGAACGTTCAGGCCGGGATTTCAACGTGGTTGGGACTTGTAACGGGCTCGTATGCCTTTCCTTAGGTTACAATAAACTAAGAATTTGGAATCCCGTTAGAAAGTTTGTGATTTTGCCATGCCCTATTTCTGAGTATATAGCTAGGTATGCCTTTGGCTATGATTCGCGTAACAAGCAGAGAGTGGGTTGGTCCTTAGCTCGGGGCTCGTGGAAGAGTCTTGGAGTTGGAAGTACTGGTCGAGGCTTTTTATCTGAACTCATCCAGCAGCCTGTTTTTGTCAATGGTGCTCTGCATTGGGTTCAACTCAATACGATGAAAGGGGAAAATGGAATTATGTCGTTTGATATGGTGAGTGAATCGTTTGGCGAGACTAGGGTTCCCCAATGTGTGACAAAAATGCTAATGTGTACCTTAAGACATGAGGAGAACCTTGCCTTGCTTACATGGGATTCTGCAAGCGTATACCATCTTTTTTCTTATGACATCTGGGTGATGAAAGAGTATGGTGTCAGGAAGTCGCAGTGCTCGCCATCAAGAATTTATAATAAGGCCATTATGCTGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

216

Amino Acids

24.86

Weight (kDa)

8.88

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
AccI GTMKAC 2 cut(s) 44, 540
AccII CGCG 1 cut(s) 244
AclI AACGTT 1 cut(s) 82
AcsI RAATTY 2 cut(s) 159, 615
AfaI GTAC 2 cut(s) 310, 487
AfiI CCNNNNNNNGG 1 cut(s) 276
AflII CTTAAG 1 cut(s) 490
AgsI TTSAA 2 cut(s) 100, 380
AluBI AGCT 2 cut(s) 218, 275
AluI AGCT 2 cut(s) 218, 275
Alw21I GWGCWC 2 cut(s) 367, 605
Alw26I GTCTC 1 cut(s) 440
Ama87I CYCGRG 2 cut(s) 29, 276
AoxI GGCC 2 cut(s) 88, 627
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 2 cut(s) 159, 615
AspS9I GGNCC 1 cut(s) 267
AsuC2I CCSGG 2 cut(s) 49, 92
AsuHPI GGTGA 2 cut(s) 439, 580
AvaI CYCGRG 2 cut(s) 29, 276
AvaII GGWCC 1 cut(s) 267
AxyI CCTNAGG 1 cut(s) 139
BanII GRGCYC 2 cut(s) 126, 284
BauI CACGAG 1 cut(s) 283
Bbv12I GWGCWC 2 cut(s) 367, 605
BbvI GCAGC 1 cut(s) 355
BccI CCATC 2 cut(s) 552, 616
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BcnI CCSGG 2 cut(s) 49, 92
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 2 cut(s) 219, 450
BfrI CTTAAG 1 cut(s) 490
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
BmcAI AGTACT 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 49, 92
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 2 cut(s) 29, 276
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 2 cut(s) 49, 92
Bpu10I CCTNAGC 1 cut(s) 271
BpuMI CCSGG 2 cut(s) 49, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 316
Bse21I CCTNAGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 90, 629
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 2 cut(s) 367, 605
BsiHKCI CYCGRG 2 cut(s) 29, 276
BsiSI CCGG 2 cut(s) 49, 91
BslFI GGGAC 2 cut(s) 35, 124
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 35, 124
BsnI GGCC 2 cut(s) 90, 629
BsoBI CYCGRG 2 cut(s) 29, 276
Bsp1286I GDGCHC 4 cut(s) 126, 284, 367, 605
BspANI GGCC 2 cut(s) 90, 629
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 456
BspTI CTTAAG 1 cut(s) 490
BsrI ACTGG 1 cut(s) 316
BssNAI GTATAC 2 cut(s) 45, 541
BssSI CACGAG 1 cut(s) 283
Bst1107I GTATAC 2 cut(s) 45, 541
Bst2BI CACGAG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 284
BstAFI CTTAAG 1 cut(s) 490
BstC8I GCNNGC 2 cut(s) 535, 605
BstDEI CTNAG 4 cut(s) 139, 155, 207, 271
BstF5I GGATG 1 cut(s) 336
BstFNI CGCG 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 440
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 224, 250, 604
BstSCI CCNGG 2 cut(s) 47, 90
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 355
BstXI CCANNNNNNTGG 1 cut(s) 637
BstZ17I GTATAC 2 cut(s) 45, 541
Bsu36I CCTNAGG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 90, 629
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 2 cut(s) 43, 605
Cac8I GCNNGC 2 cut(s) 535, 605
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 2 cut(s) 309, 486
CviAII CATG 3 cut(s) 195, 497, 522
CviQI GTAC 2 cut(s) 309, 486
DdeI CTNAG 4 cut(s) 139, 155, 207, 271
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco24I GRGCYC 2 cut(s) 126, 284
Eco47I GGWCC 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 139
Eco88I CYCGRG 2 cut(s) 29, 276
EcoT38I GRGCYC 2 cut(s) 126, 284
FaeI CATG 3 cut(s) 198, 500, 525
FaqI GGGAC 2 cut(s) 35, 124
FatI CATG 3 cut(s) 194, 496, 521
FblI GTMKAC 2 cut(s) 44, 540
Fnu4HI GCNGC 1 cut(s) 344
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 2 cut(s) 126, 284
Fsp4HI GCNGC 1 cut(s) 344
FspBI CTAG 2 cut(s) 219, 450
GluI GCNGC 1 cut(s) 344
HaeIII GGCC 2 cut(s) 90, 629
HapII CCGG 2 cut(s) 49, 91
Hin1II CATG 3 cut(s) 198, 500, 525
HinfI GANTC 5 cut(s) 166, 239, 292, 434, 527
HpaII CCGG 2 cut(s) 49, 91
HphI GGTGA 2 cut(s) 439, 580
Hpy166II GTNNAC 3 cut(s) 45, 486, 541
Hpy188I TCNGA 2 cut(s) 208, 331
Hpy188III TCNNGA 3 cut(s) 29, 589, 612
Hpy8I GTNNAC 3 cut(s) 45, 486, 541
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 2 cut(s) 82, 102
HpyCH4V TGCA 2 cut(s) 370, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 250, 604
HpyF3I CTNAG 4 cut(s) 139, 155, 207, 271
HpySE526I ACGT 2 cut(s) 82, 102
Hsp92II CATG 3 cut(s) 198, 500, 525
LpnPI CCDG 9 cut(s) 62, 72, 104, 297, 353, 360, 550, 574, 623
Lsp1109I GCAGC 1 cut(s) 355
MaeI CTAG 2 cut(s) 219, 450
MaeII ACGT 2 cut(s) 82, 102
MaeIII GTNAC 4 cut(s) 116, 143, 245, 466
MboII GAAGA 2 cut(s) 89, 301
MhlI GDGCHC 4 cut(s) 126, 284, 367, 605
MluCI AATT 3 cut(s) 159, 408, 615
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 2 cut(s) 311, 493
MseI TTAA 1 cut(s) 491
MslI CAYNNNNRTG 1 cut(s) 566
MspCI CTTAAG 1 cut(s) 490
MspI CCGG 2 cut(s) 49, 91
MspR9I CCNGG 2 cut(s) 49, 92
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 224, 250, 604
NciI CCSGG 2 cut(s) 49, 92
NlaIII CATG 3 cut(s) 198, 500, 525
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 466
PfeI GAWTC 4 cut(s) 166, 239, 434, 527
PkrI GCNGC 1 cut(s) 345
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PsiI TTATAA 1 cut(s) 621
Psp1406I AACGTT 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 1 cut(s) 267
RsaI GTAC 2 cut(s) 310, 487
RsaNI GTAC 2 cut(s) 309, 486
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 1 cut(s) 344
Sau96I GGNCC 1 cut(s) 267
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 49, 92
SduI GDGCHC 4 cut(s) 126, 284, 367, 605
SetI ASST 8 cut(s) 85, 105, 145, 220, 224, 277, 491, 510
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
Sse9I AATT 3 cut(s) 159, 408, 615
SspMI CTAG 2 cut(s) 219, 450
StyD4I CCNGG 2 cut(s) 47, 90
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 2 cut(s) 85, 105
TaqI TCGA 2 cut(s) 57, 316
TasI AATT 3 cut(s) 159, 408, 615
TatI WGTACW 1 cut(s) 308
TfiI GAWTC 4 cut(s) 166, 239, 434, 527
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TscAI CASTG 2 cut(s) 43, 605
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 3 cut(s) 90, 407, 587
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 2 cut(s) 43, 605
Vha464I CTTAAG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 2 cut(s) 159, 615
XmiI GTMKAC 2 cut(s) 44, 540
XspI CTAG 2 cut(s) 219, 450
ZrmI AGTACT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.