Prupe.4G213100_v2.0.a1

Ribosomal RNA small subunit methyltransferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
13291963 .. 13292274
312 bp
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UTR
Exon/CDS
Intron
Prupe.4G213100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 234 bp
ATGATTGAGAAACAGAGTAATGGAAACGAAGGGGGTAACACAATTGAACTTGAGGGTATTCCAATTACCCCAGTAGACCATAACCCCAAGAAAGGACCTGGGGCTATCTTCATCCTTGAGAAAACTTCTTTAGAGGTTGCTAAAGTTGGAAAGACTTATCAGCTATTAAATTCTGATGATCACACAATAATTCCACGGCTAGTATGTGTGTTGATTCTCTTTCCTTTCCATTGA

Protein Analysis

78

Amino Acids

8.45

Weight (kDa)

5.82

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
ApoI RAATTY 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 99
BclI TGATCA 1 cut(s) 178
BfaI CTAG 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 65
BpuEI CTTGAG 2 cut(s) 71, 137
BsaJI CCNNGG 2 cut(s) 98, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 98, 194
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 92
Bsp143I GATC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 98, 194
BssMI GATC 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 95
CviJI RGCY 3 cut(s) 104, 163, 199
CviKI_1 RGCY 3 cut(s) 104, 163, 199
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 97
FaiI YATR 2 cut(s) 81, 205
FbaI TGATCA 1 cut(s) 178
FblI GTMKAC 1 cut(s) 75
FokI GGATG 1 cut(s) 98
FspBI CTAG 1 cut(s) 200
HinfI GANTC 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 84, 84, 111
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 100
MfeI CAATTG 1 cut(s) 42
MluCI AATT 4 cut(s) 42, 63, 169, 189
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 2 cut(s) 46, 127
MseI TTAA 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 99
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 99
NdeII GATC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 214
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 99
SetI ASST 3 cut(s) 100, 138, 165
SgeI CNNG 8 cut(s) 62, 83, 100, 110, 111, 128, 207, 212
SinI GGWCC 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 50, 116
SmoI CTYRAG 2 cut(s) 50, 116
Sse9I AATT 4 cut(s) 42, 63, 169, 189
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 97
TasI AATT 4 cut(s) 42, 63, 169, 189
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.