Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13441159 .. 13443137

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G215000.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCAGCTGTCCTTCGAATTAGCATCAACCCAAACCCTTTGGCAAATAAAATGTCAAGATCAAATCCTAGCCGTCCATCTAGGACCACGATGGCCATAATGTCGCAAGATCATCCTTATTGGGCCTCCGTGCATGCCGAGATAGAAGTCCATCTCAAGCAGCACATCCTTGTCAGGCCTCCACTCTCAGTGTTTGAGCCCATGCACCATTTAGTGTTTTCCGCCCCGCCAAGCCCCGGGCCGGCCTTGTGCGTGGCCGCGTGTGAGCTCGTGGGCGGCCACCGCGACCAAGCCATTGCTGCGGCAGCTGCCTTGCACCTCATGCATGCCGCAGCTGTCATTCATGAGCAACTTTTATCAACCGATAGGCTCAAGACCAAGCCCAAACCCAGGCCCATGGTTCACAGTCCAGGGATAGAGCTTCTCACTGGAGATGGAATGTTTGCATTTGGGTATGAGTTATTGGCTAAGTCAATGGATCCGGCCCAAAACAATTCGGACCGGATTTTACGGGTTATTGTTGAAATGACACGTGCCATGGGGTCACAGGGCATGGTGGATGGGCAATACCATGAGATACTGATGCTGTGCAAACAATCAAGGCACTACAAATACGTGTGTGAAAAAAAGGAAGGTGGGCTCCATGCATGTGGGGCCGCCTGTGGGGCCATATTAGGAGGTGCAAGTGAGGAGGAAATAGAGAGATTGAGAAGATATGGTCTGTGTGTGGGAGTGATGATAGCGTTTTCAAACAGAGTTGAAGAAGGAAATGAGATGGAAACAACGGAAGTGGTGAAGGAGCTCAGAAGTTTGGCACTCAAGGAACTAGAATTTTTCCATGAAGGAAAGGCTGAGGCAATTTCTTGCTTCCATCATCTCTTTAACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0034357 GO:0042214 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0046246 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

297

Amino Acids

32.63

Weight (kDa)

6.78

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	260, 285
AciI	CCGC	8 cut(s)	222, 227, 258, 276, 283, 302, 330, 657
AclWI	GGATC	2 cut(s)	473, 486
AcoI	YGGCCR	3 cut(s)	93, 255, 277
AcsI	RAATTY	1 cut(s)	830
AcvI	CACGTG	1 cut(s)	533
AfiI	CCNNNNNNNGG	4 cut(s)	236, 241, 390, 663
AflIII	ACRYGT	2 cut(s)	530, 615
AgsI	TTSAA	3 cut(s)	524, 750, 761
AjnI	CCWGG	2 cut(s)	389, 409
AluBI	AGCT	6 cut(s)	8, 268, 308, 335, 421, 802
AluI	AGCT	6 cut(s)	8, 268, 308, 335, 421, 802
Alw21I	GWGCWC	2 cut(s)	270, 804
AlwI	GGATC	2 cut(s)	473, 486
Ama87I	CYCGRG	1 cut(s)	236
ApeKI	GCWGC	6 cut(s)	5, 160, 299, 305, 308, 332
ApoI	RAATTY	1 cut(s)	830
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspS9I	GGNCC	8 cut(s)	84, 123, 239, 393, 484, 499, 654, 666
AsuC2I	CCSGG	2 cut(s)	237, 238
AsuHPI	GGTGA	1 cut(s)	805
AsuII	TTCGAA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	84, 499
BalI	TGGCCA	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	478
BanII	GRGCYC	4 cut(s)	201, 270, 642, 804
BauI	CACGAG	1 cut(s)	269
BbrPI	CACGTG	1 cut(s)	533
Bbv12I	GWGCWC	2 cut(s)	270, 804
BbvCI	CCTCAGC	1 cut(s)	852
BbvI	GCAGC	6 cut(s)	17, 172, 286, 295, 317, 344
BccI	CCATC	7 cut(s)	85, 85, 159, 428, 554, 769, 879
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	2 cut(s)	391, 411
BcnI	CCSGG	2 cut(s)	237, 238
BfaI	CTAG	3 cut(s)	69, 81, 827
BglI	GCCNNNNNGGC	1 cut(s)	665
Bme1390I	CCNGG	4 cut(s)	237, 238, 391, 411
Bme18I	GGWCC	2 cut(s)	84, 499
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	8 cut(s)	84, 123, 239, 393, 484, 499, 654, 666
BmiI	GGNNCC	4 cut(s)	480, 641, 655, 667
BmrFI	CCNGG	4 cut(s)	237, 238, 391, 411
BmsI	GCATC	2 cut(s)	33, 573
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	852
Bpu14I	TTCGAA	1 cut(s)	16
BpuEI	CTTGAG	3 cut(s)	140, 356, 803
BpuMI	CCSGG	2 cut(s)	237, 238
BsaAI	YACGTR	2 cut(s)	533, 616
BsaJI	CCNNGG	6 cut(s)	235, 236, 389, 396, 410, 537
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 241, 390, 663
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	391, 411
BseDI	CCNNGG	6 cut(s)	235, 236, 389, 396, 410, 537
BseGI	GGATG	3 cut(s)	112, 165, 565
BseLI	CCNNNNNNNGG	4 cut(s)	236, 241, 390, 663
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	201, 817, 843
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	6 cut(s)	17, 172, 286, 295, 317, 344
Bsh1236I	CGCG	2 cut(s)	260, 285
BsiHKAI	GWGCWC	2 cut(s)	270, 804
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	4 cut(s)	237, 242, 482, 502
BslI	CCNNNNNNNGG	4 cut(s)	236, 241, 390, 663
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	4 cut(s)	201, 270, 642, 804
Bsp143I	GATC	3 cut(s)	59, 109, 478
Bsp19I	CCATGG	2 cut(s)	396, 537
BspACI	CCGC	8 cut(s)	222, 227, 258, 276, 283, 302, 330, 657
BspCNI	CTCAG	3 cut(s)	200, 816, 844
BspFNI	CGCG	2 cut(s)	260, 285
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	4 cut(s)	480, 641, 655, 667
BspPI	GGATC	2 cut(s)	473, 486
BspT104I	TTCGAA	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	6 cut(s)	235, 236, 389, 396, 410, 537
BssMI	GATC	3 cut(s)	59, 109, 478
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	396, 537
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	391, 411
Bst4CI	ACNGT	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstBAI	YACGTR	2 cut(s)	533, 616
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	135, 243, 327
BstDEI	CTNAG	4 cut(s)	187, 468, 803, 852
BstDSI	CCRYGG	2 cut(s)	396, 537
BstF5I	GGATG	3 cut(s)	112, 165, 565
BstFNI	CGCG	2 cut(s)	260, 285
BstKTI	GATC	3 cut(s)	62, 112, 481
BstMBI	GATC	3 cut(s)	59, 109, 478
BstMWI	GCNNNNNNNGC	7 cut(s)	282, 299, 305, 308, 322, 653, 665
BstNI	CCWGG	2 cut(s)	391, 411
BstNSI	RCATGY	3 cut(s)	137, 329, 651
BstSCI	CCNGG	4 cut(s)	235, 236, 389, 409
BstUI	CGCG	2 cut(s)	260, 285
BstV1I	GCAGC	6 cut(s)	17, 172, 286, 295, 317, 344
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	2 cut(s)	397, 650
BstYI	RGATCY	1 cut(s)	478
BtgI	CCRYGG	2 cut(s)	396, 537
BtsCI	GGATG	3 cut(s)	112, 165, 565
BtsIMutI	CAGTG	2 cut(s)	195, 426
Cac8I	GCNNGC	3 cut(s)	135, 243, 327
CciI	TCATGA	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	8 cut(s)	84, 123, 239, 393, 484, 499, 654, 666
Cfr9I	CCCGGG	1 cut(s)	236
CpoI	CGGWCCG	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	771, 806
CspI	CGGWCCG	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	187, 468, 803, 852
DpnI	GATC	3 cut(s)	61, 111, 480
DpnII	GATC	3 cut(s)	59, 109, 478
EaeI	YGGCCR	3 cut(s)	93, 255, 277
EciI	GGCGGA	1 cut(s)	211
Ecl136II	GAGCTC	2 cut(s)	268, 802
Eco130I	CCWWGG	2 cut(s)	396, 537
Eco147I	AGGCCT	1 cut(s)	178
Eco24I	GRGCYC	4 cut(s)	201, 270, 642, 804
Eco47I	GGWCC	2 cut(s)	84, 499
Eco53kI	GAGCTC	2 cut(s)	268, 802
Eco72I	CACGTG	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	2 cut(s)	268, 802
EcoRII	CCWGG	2 cut(s)	389, 409
EcoT14I	CCWWGG	2 cut(s)	396, 537
EcoT22I	ATGCAT	2 cut(s)	327, 649
EcoT38I	GRGCYC	4 cut(s)	201, 270, 642, 804
ErhI	CCWWGG	2 cut(s)	396, 537
FauI	CCCGC	1 cut(s)	234
FokI	GGATG	3 cut(s)	99, 152, 572
FriOI	GRGCYC	4 cut(s)	201, 270, 642, 804
FseI	GGCCGGCC	1 cut(s)	245
FspBI	CTAG	3 cut(s)	69, 81, 827
GsuI	CTGGAG	1 cut(s)	450
HapII	CCGG	4 cut(s)	237, 242, 482, 502
HpaII	CCGG	4 cut(s)	237, 242, 482, 502
HphI	GGTGA	1 cut(s)	805
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	499, 806
Hpy188III	TCNNGA	3 cut(s)	57, 344, 373
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	5 cut(s)	23, 626, 758, 790, 836
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	2 cut(s)	532, 615
HpyCH4V	TGCA	8 cut(s)	133, 205, 316, 325, 446, 591, 647, 683
HpyF10VI	GCNNNNNNNGC	7 cut(s)	282, 299, 305, 308, 322, 653, 665
HpyF3I	CTNAG	4 cut(s)	187, 468, 803, 852
HpySE526I	ACGT	2 cut(s)	532, 615
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	59, 109, 478
LmnI	GCTCC	2 cut(s)	645, 799
Lsp1109I	GCAGC	6 cut(s)	17, 172, 286, 295, 317, 344
LweI	GCATC	2 cut(s)	33, 573
MaeI	CTAG	3 cut(s)	69, 81, 827
MaeII	ACGT	2 cut(s)	532, 615
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	3 cut(s)	61, 111, 480
MboI	GATC	3 cut(s)	59, 109, 478
MboII	GAAGA	2 cut(s)	723, 773
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	4 cut(s)	201, 270, 642, 804
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	4 cut(s)	18, 493, 830, 858
MluNI	TGGCCA	1 cut(s)	95
MnlI	CCTC	7 cut(s)	136, 189, 329, 671, 682, 685, 847
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	2 cut(s)	327, 649
MroNI	GCCGGC	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	882
MslI	CAYNNNNRTG	1 cut(s)	648
Msp20I	TGGCCA	1 cut(s)	95
MspA1I	CMGCKG	3 cut(s)	8, 308, 335
MspI	CCGG	4 cut(s)	237, 242, 482, 502
MspR9I	CCNGG	4 cut(s)	237, 238, 391, 411
MvaI	CCWGG	2 cut(s)	391, 411
MvnI	CGCG	2 cut(s)	260, 285
MwoI	GCNNNNNNNGC	7 cut(s)	282, 299, 305, 308, 322, 653, 665
NaeI	GCCGGC	1 cut(s)	243
NciI	CCSGG	2 cut(s)	237, 238
NcoI	CCATGG	2 cut(s)	396, 537
NdeII	GATC	3 cut(s)	59, 109, 478
NgoMIV	GCCGGC	1 cut(s)	241
NlaIV	GGNNCC	4 cut(s)	480, 641, 655, 667
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	543
NsiI	ATGCAT	2 cut(s)	327, 649
NspI	RCATGY	3 cut(s)	137, 329, 651
NspV	TTCGAA	1 cut(s)	16
PaeI	GCATGC	2 cut(s)	137, 329
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	178
PdiI	GCCGGC	1 cut(s)	243
PmaCI	CACGTG	1 cut(s)	533
PmlI	CACGTG	1 cut(s)	533
Ppu21I	YACGTR	2 cut(s)	533, 616
Psp124BI	GAGCTC	2 cut(s)	270, 804
Psp6I	CCWGG	2 cut(s)	389, 409
PspCI	CACGTG	1 cut(s)	533
PspGI	CCWGG	2 cut(s)	389, 409
PspN4I	GGNNCC	4 cut(s)	480, 641, 655, 667
PspPI	GGNCC	8 cut(s)	84, 123, 239, 393, 484, 499, 654, 666
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	3 cut(s)	8, 308, 335
RigI	GGCCGGCC	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	648
Rsr2I	CGGWCCG	1 cut(s)	499
RsrII	CGGWCCG	1 cut(s)	499
SacI	GAGCTC	2 cut(s)	270, 804
SaqAI	TTAA	1 cut(s)	882
Sau3AI	GATC	3 cut(s)	59, 109, 478
Sau96I	GGNCC	8 cut(s)	84, 123, 239, 393, 484, 499, 654, 666
ScrFI	CCNGG	4 cut(s)	237, 238, 391, 411
SduI	GDGCHC	4 cut(s)	201, 270, 642, 804
SfaNI	GCATC	2 cut(s)	33, 573
SfuI	TTCGAA	1 cut(s)	16
SinI	GGWCC	2 cut(s)	84, 499
SmaI	CCCGGG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	3 cut(s)	155, 371, 818
SmoI	CTYRAG	3 cut(s)	155, 371, 818
SphI	GCATGC	2 cut(s)	137, 329
Sse9I	AATT	4 cut(s)	18, 493, 830, 858
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	8 cut(s)	222, 227, 258, 276, 283, 302, 330, 657
SspMI	CTAG	3 cut(s)	69, 81, 827
SstI	GAGCTC	2 cut(s)	270, 804
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	4 cut(s)	235, 236, 389, 409
StyI	CCWWGG	2 cut(s)	396, 537
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	2 cut(s)	535, 618
TaqI	TCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	18, 493, 830, 858
TauI	GCSGC	5 cut(s)	260, 279, 305, 332, 659
Tru1I	TTAA	1 cut(s)	882
Tru9I	TTAA	1 cut(s)	882
TscAI	CASTG	2 cut(s)	195, 433
TseFI	GTSAC	1 cut(s)	543
TseI	GCWGC	6 cut(s)	5, 160, 299, 305, 308, 332
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	2 cut(s)	332, 855
TspGWI	ACGGA	2 cut(s)	118, 800
TspMI	CCCGGG	1 cut(s)	236
TspRI	CASTG	2 cut(s)	195, 433
VpaK11BI	GGWCC	2 cut(s)	84, 499
XapI	RAATTY	1 cut(s)	830
XceI	RCATGY	3 cut(s)	137, 329, 651
XmaI	CCCGGG	1 cut(s)	236
XspI	CTAG	3 cut(s)	69, 81, 827
Zsp2I	ATGCAT	2 cut(s)	327, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.