Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13728912 .. 13730969

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G218400.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCAGCTTGCCGAATTCCAAATGGGTCTTGCAAAACTTGCTCTTGGTTCAGGGAATCTTTCATCTTCGCAGGTCTTTGGAGCCATCAGACAGGCCATGCAGCGTGCACCTCACTACCCTGAATGCCATAATTTAACTGGGCTAGTCTATGAGGCACAAAGGAGGATCTGCAGAAGCTTTAATAAAAAAAAAATTAAAAAAAATGGAGGTGGGTCTGGAGGTACAGTGGATTCTGTTGTGCCATGGCTTAGTGACACTGCTTGTTCTAGTCTCCTTCCTCTGTGGCCAATGGCCCATCTTGAAGGCACGCCCATCCAACGCATCAACCACTTTCTCACCTTCGGCGCCTACGATTACTTTCAACGATTTGTTGGGCTGCTGCAGAAGACACCATGCTCGCTTACAAGGCTGCCCAGGAGTAGCGCTTGCGGATCTTGCACCAACGCATCCGATAAGATTGGGTTCATGGCTAGCAGAGGCGGTGAGGCTGAAGAAGACGACCACTTTGGCCTCCTCTGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0019439 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035327 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070478 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

175

Amino Acids

19.12

Weight (kDa)

8.97

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	344
AciI	CCGC	2 cut(s)	429, 480
AclWI	GGATC	2 cut(s)	173, 439
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	510
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	2 cut(s)	223, 521
AfeI	AGCGCT	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	302, 362
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	2 cut(s)	7, 177
AluI	AGCT	2 cut(s)	7, 177
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	275
Alw44I	GTGCAC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	173, 439
Aor51HI	AGCGCT	1 cut(s)	424
AoxI	GGCC	4 cut(s)	93, 284, 291, 508
ApaLI	GTGCAC	1 cut(s)	105
ApeKI	GCWGC	5 cut(s)	4, 100, 376, 379, 409
ApoI	RAATTY	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AspLEI	GCGC	2 cut(s)	347, 425
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	328, 494
AsuNHI	GCTAGC	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	344
BbsI	GAAGAC	2 cut(s)	392, 501
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	5 cut(s)	16, 112, 363, 366, 396
BccI	CCATC	3 cut(s)	92, 303, 320
BciT130I	CCWGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	3 cut(s)	143, 267, 471
BfmI	CTRYAG	2 cut(s)	169, 380
BfoI	RGCGCY	2 cut(s)	348, 426
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	5 cut(s)	5, 101, 377, 380, 410
BlsI	GCNGC	5 cut(s)	6, 102, 378, 381, 411
Bme1390I	CCNGG	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	82, 346
BmrFI	CCNGG	1 cut(s)	415
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	330, 455
BmtI	GCTAGC	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	392, 501
BpmI	CTGGAG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	242, 413
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bse1I	ACTGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	242, 413
BseGI	GGATG	2 cut(s)	312, 446
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	5 cut(s)	16, 112, 363, 366, 396
BshFI	GGCC	4 cut(s)	95, 286, 293, 510
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	4 cut(s)	95, 286, 293, 510
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	165, 431
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	2 cut(s)	429, 480
BspANI	GGCC	4 cut(s)	95, 286, 293, 510
BspLI	GGNNCC	2 cut(s)	82, 346
BspMAI	CTGCAG	2 cut(s)	173, 384
BspMI	ACCTGC	1 cut(s)	61
BspOI	GCTAGC	1 cut(s)	474
BspPI	GGATC	2 cut(s)	173, 439
BspT107I	GGYRCC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	242, 413
BssMI	GATC	2 cut(s)	165, 431
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	226
BstACI	GRCGYC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	6 cut(s)	9, 105, 308, 398, 427, 472
BstDEI	CTNAG	1 cut(s)	248
BstDSI	CCRYGG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	312, 446
BstH2I	RGCGCY	2 cut(s)	348, 426
BstHHI	GCGC	2 cut(s)	347, 425
BstKTI	GATC	2 cut(s)	168, 434
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	165, 431
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 406, 435
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstSFI	CTRYAG	2 cut(s)	169, 380
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	5 cut(s)	16, 112, 363, 366, 396
BstV2I	GAAGAC	2 cut(s)	392, 501
BstX2I	RGATCY	2 cut(s)	165, 431
BstYI	RGATCY	2 cut(s)	165, 431
BsuRI	GGCC	4 cut(s)	95, 286, 293, 510
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	312, 446
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	231, 255
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	6 cut(s)	9, 105, 308, 398, 427, 472
CfoI	GCGC	2 cut(s)	347, 425
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	222, 520
CviAII	CATG	4 cut(s)	97, 243, 393, 466
CviQI	GTAC	2 cut(s)	222, 520
DdeI	CTNAG	1 cut(s)	248
DinI	GGCGCC	1 cut(s)	346
DpnI	GATC	2 cut(s)	167, 433
DpnII	GATC	2 cut(s)	165, 431
EaeI	YGGCCR	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	242
Eco47III	AGCGCT	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	242
EgeI	GGCGCC	1 cut(s)	346
EheI	GGCGCC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	4 cut(s)	100, 246, 396, 469
FaiI	YATR	6 cut(s)	98, 129, 150, 244, 394, 467
FatI	CATG	4 cut(s)	96, 242, 392, 465
Fnu4HI	GCNGC	5 cut(s)	5, 101, 377, 380, 410
FokI	GGATG	2 cut(s)	299, 433
Fsp4HI	GCNGC	5 cut(s)	5, 101, 377, 380, 410
FspBI	CTAG	3 cut(s)	143, 267, 471
GlaI	GCGC	2 cut(s)	346, 424
GluI	GCNGC	5 cut(s)	5, 101, 377, 380, 410
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	2 cut(s)	348, 426
HaeIII	GGCC	4 cut(s)	95, 286, 293, 510
HhaI	GCGC	2 cut(s)	347, 425
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	4 cut(s)	100, 246, 396, 469
Hin6I	GCGC	2 cut(s)	345, 423
HinP1I	GCGC	2 cut(s)	345, 423
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	2 cut(s)	55, 230
HphI	GGTGA	2 cut(s)	328, 494
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	89, 451
Hpy188III	TCNNGA	2 cut(s)	216, 299
Hpy8I	GTNNAC	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	284, 296, 349
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	7 cut(s)	4, 32, 100, 107, 171, 382, 438
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 406, 435
HpyF3I	CTNAG	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	4 cut(s)	100, 246, 396, 469
HspAI	GCGC	2 cut(s)	345, 423
KasI	GGCGCC	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	165, 431
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	9 cut(s)	36, 56, 77, 123, 132, 201, 400, 427, 502
Lsp1109I	GCAGC	5 cut(s)	16, 112, 363, 366, 396
LweI	GCATC	2 cut(s)	330, 455
MaeI	CTAG	3 cut(s)	143, 267, 471
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	2 cut(s)	167, 433
MboI	GATC	2 cut(s)	165, 431
MboII	GAAGA	4 cut(s)	57, 397, 503, 506
MflI	RGATCY	2 cut(s)	165, 431
MhlI	GDGCHC	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	3 cut(s)	14, 130, 192
MluNI	TGGCCA	1 cut(s)	286
Mly113I	GGCGCC	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	340
Mox20I	TGGCCA	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	3 cut(s)	134, 180, 195
Msp20I	TGGCCA	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	3 cut(s)	38, 406, 435
NarI	GGCGCC	1 cut(s)	345
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	165, 431
NheI	GCTAGC	1 cut(s)	470
NlaIII	CATG	4 cut(s)	100, 246, 396, 469
NlaIV	GGNNCC	2 cut(s)	82, 346
NmuCI	GTSAC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PctI	GAATGC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	55, 230
PkrI	GCNGC	5 cut(s)	6, 102, 378, 381, 411
PluTI	GGCGCC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	82, 346
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	2 cut(s)	173, 384
PsuI	RGATCY	2 cut(s)	165, 431
RsaI	GTAC	2 cut(s)	223, 521
RsaNI	GTAC	2 cut(s)	222, 520
SaqAI	TTAA	3 cut(s)	134, 180, 195
SatI	GCNGC	5 cut(s)	5, 101, 377, 380, 410
Sau3AI	GATC	2 cut(s)	165, 431
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	7 cut(s)	9, 75, 112, 179, 211, 223, 341
SfaNI	GCATC	2 cut(s)	330, 455
SfcI	CTRYAG	2 cut(s)	169, 380
SfoI	GGCGCC	1 cut(s)	346
Sse9I	AATT	3 cut(s)	14, 130, 192
SsiI	CCGC	2 cut(s)	429, 480
SspDI	GGCGCC	1 cut(s)	344
SspMI	CTAG	3 cut(s)	143, 267, 471
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	226
TasI	AATT	3 cut(s)	14, 130, 192
TfiI	GAWTC	2 cut(s)	55, 230
Tru1I	TTAA	3 cut(s)	134, 180, 195
Tru9I	TTAA	3 cut(s)	134, 180, 195
TscAI	CASTG	2 cut(s)	231, 262
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	5 cut(s)	4, 100, 376, 379, 409
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	51, 454
TspRI	CASTG	2 cut(s)	231, 262
VneI	GTGCAC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	3 cut(s)	143, 267, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.