Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0022478

Physical Location & Seq

Genomic Coordinates Forward (+)

13789348 .. 13791624

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G219300.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAAGGTCTTCACCACCCCAACATCCCTTGATCGTGTACTTGAGCCGTCACCGGACATGAAAGAGTCAGTGATGGCCGTGGAGAAGATCGTAGGCTACAACTTCAAGAACAAGAAGCTTCTAGAAGAAGCTCTCACCCACCCCTCCGTCGCTGGGTCCGCTTCCTATCAACGCCTCGAGGTCCTCGGCGACAGCGCTCTAAACCATGCAGTGACCAACTACTTCTTTTGTATGGCTGACCACCAAAAGTTCACCCAAGGCCAAATCACTAAGCTACGCTCCGCCAATGCTGGGAACCTCAACCTCGCCCGCGTCGCCGTTCATCATGGGCTTTATCGCTACCTTCGCCGCCACAATACAGCTGATCTTGATGATCAGGTTAGGGAGTTTACTGAAGCTGTAACTAATGGAGAAGAAGAGCCGGGGCTTGTATATTGTAAATCTGAAGAAGCCAAAGTTCTTGCAGATATTGTTGAATCCGTGGCAGCTGCTGTTTACATCGAGTTGAATTTTGATCTCGATAGACTATGGATGAAATTTAAGCCTCTTTTGGAGCCTATATTTACTCTTGAAAACTTGCATGACCCCACGACAGAATTGAATGAGTTTTGCCAGAAGAACGGGAAGCGCTATCAAATCAAGCTGCGGCCGAGACATGAGACCCGAGATGTAAGTATTGCTGATGTCTATGTTGATGACGAGTTTGTTGCCTCAGGTTGGTCTAACAAGAAGAAAGGTGCAAAGCGCAACGCTGCTATAGAAGCTGTAAATAAGTTGTTTCAATCGGTGGTTGTTGACGATGGGTCGTTCCAAGGTAGTGCAGTTGGAAACAACATGTCATTTCGTATTGAAGAAGCGATTCAGGGGTTGCATGTGCTTTGTGTCAAGAAGAGGTTGCCTAAACCTTCAGAATACAAAGAAGAGAACGTGTTTGGTCCTCCACATGAGAAGAAATATGTATACTCAGTTAAAGTGGTAACTTCAGATGGTACCGTGCAATCTGTGACGGGAGATGAAAAGCCAAGGAAAAAAAAAGCGATGAATTCTGCATCTTACAAGATGATCCGTGCTTTACAGCAAAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

363

Amino Acids

40.87

Weight (kDa)

8.44

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022478)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G219300_v2.0.a1 Prupe.4G219500_v2.0.a1 Prupe.4G219600_v2.0.a1 Prupe.4G219600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	176
Acc65I	GGTACC	1 cut(s)	989
AccB1I	GGYRCC	1 cut(s)	989
AccI	GTMKAC	1 cut(s)	960
AccII	CGCG	1 cut(s)	312
AciI	CCGC	5 cut(s)	159, 282, 310, 349, 646
AclWI	GGATC	1 cut(s)	1057
AcoI	YGGCCR	2 cut(s)	75, 647
AcsI	RAATTY	3 cut(s)	508, 536, 1042
AcuI	CTGAAG	4 cut(s)	414, 465, 891, 966
AfaI	GTAC	2 cut(s)	39, 991
AfeI	AGCGCT	2 cut(s)	196, 629
AfiI	CCNNNNNNNGG	3 cut(s)	153, 291, 717
AflIII	ACRYGT	2 cut(s)	834, 927
AgsI	TTSAA	7 cut(s)	106, 476, 508, 572, 601, 782, 851
AhdI	GACNNNNNGTC	1 cut(s)	802
AluBI	AGCT	9 cut(s)	118, 131, 274, 362, 398, 488, 643, 764, 1086
AluI	AGCT	9 cut(s)	118, 131, 274, 362, 398, 488, 643, 764, 1086
Alw26I	GTCTC	2 cut(s)	646, 653
AlwI	GGATC	1 cut(s)	1057
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	2 cut(s)	176, 663
Aor51HI	AGCGCT	2 cut(s)	196, 629
AoxI	GGCC	3 cut(s)	75, 259, 647
ApeKI	GCWGC	4 cut(s)	485, 488, 643, 752
ApoI	RAATTY	3 cut(s)	508, 536, 1042
Asp700I	GAANNNNTTC	2 cut(s)	8, 858
Asp718I	GGTACC	1 cut(s)	989
AspLEI	GCGC	3 cut(s)	197, 630, 747
AspS9I	GGNCC	3 cut(s)	156, 181, 935
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	4 cut(s)	4, 42, 127, 244
AvaI	CYCGRG	2 cut(s)	176, 663
AvaII	GGWCC	3 cut(s)	156, 181, 935
AxyI	CCTNAGG	1 cut(s)	712
BanI	GGYRCC	1 cut(s)	989
BbvI	GCAGC	4 cut(s)	475, 497, 630, 739
BccI	CCATC	3 cut(s)	67, 794, 980
BceAI	ACGGC	3 cut(s)	31, 62, 302
BcgI	CGANNNNNNTGC	2 cut(s)	689, 723
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	2 cut(s)	646, 653
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	756
BfoI	RGCGCY	2 cut(s)	198, 631
BisI	GCNGC	6 cut(s)	349, 486, 489, 644, 647, 753
BlsI	GCNGC	6 cut(s)	350, 487, 490, 645, 648, 754
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	3 cut(s)	156, 181, 935
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmeT110I	CYCGRG	2 cut(s)	176, 663
BmgT120I	GGNCC	3 cut(s)	156, 181, 935
BmiI	GGNNCC	4 cut(s)	157, 296, 555, 991
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	1058
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	7 cut(s)	78, 184, 256, 422, 480, 811, 1022
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 291, 717
Bse21I	CCTNAGG	1 cut(s)	712
BseDI	CCNNGG	7 cut(s)	78, 184, 256, 422, 480, 811, 1022
BseGI	GGATG	2 cut(s)	23, 537
BseLI	CCNNNNNNNGG	3 cut(s)	153, 291, 717
BseMII	CTCAG	2 cut(s)	726, 978
BseX3I	CGGCCG	1 cut(s)	647
BseXI	GCAGC	4 cut(s)	475, 497, 630, 739
BseYI	CCCAGC	2 cut(s)	152, 290
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	650
BshFI	GGCC	3 cut(s)	77, 261, 649
BshNI	GGYRCC	1 cut(s)	989
BsiEI	CGRYCG	1 cut(s)	650
BsiHKCI	CYCGRG	2 cut(s)	176, 663
BsiSI	CCGG	2 cut(s)	53, 422
BslI	CCNNNNNNNGG	3 cut(s)	153, 291, 717
BsmAI	GTCTC	2 cut(s)	646, 653
BsnI	GGCC	3 cut(s)	77, 261, 649
Bso31I	GGTCTC	1 cut(s)	653
BsoBI	CYCGRG	2 cut(s)	176, 663
Bsp143I	GATC	6 cut(s)	31, 87, 364, 373, 514, 1062
BspACI	CCGC	5 cut(s)	159, 282, 310, 349, 646
BspANI	GGCC	3 cut(s)	77, 261, 649
BspCNI	CTCAG	2 cut(s)	725, 977
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	4 cut(s)	157, 296, 555, 991
BspPI	GGATC	1 cut(s)	1057
BspQI	GCTCTTC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	989
BspTNI	GGTCTC	1 cut(s)	653
BssECI	CCNNGG	7 cut(s)	78, 184, 256, 422, 480, 811, 1022
BssMI	GATC	6 cut(s)	31, 87, 364, 373, 514, 1062
BssNAI	GTATAC	1 cut(s)	961
BssT1I	CCWWGG	3 cut(s)	256, 811, 1022
Bst1107I	GTATAC	1 cut(s)	961
Bst4CI	ACNGT	1 cut(s)	994
Bst6I	CTCTTC	3 cut(s)	411, 884, 915
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	270, 712, 964
BstDSI	CCRYGG	2 cut(s)	78, 480
BstF5I	GGATG	2 cut(s)	23, 537
BstFNI	CGCG	1 cut(s)	312
BstH2I	RGCGCY	2 cut(s)	198, 631
BstHHI	GCGC	3 cut(s)	197, 630, 747
BstKTI	GATC	6 cut(s)	34, 90, 367, 376, 517, 1065
BstMAI	GTCTC	2 cut(s)	646, 653
BstMBI	GATC	6 cut(s)	31, 87, 364, 373, 514, 1062
BstMCI	CGRYCG	1 cut(s)	650
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 314, 345, 761
BstNSI	RCATGY	2 cut(s)	838, 875
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	756
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	475, 497, 630, 739
BstZ17I	GTATAC	1 cut(s)	961
BstZI	CGGCCG	1 cut(s)	647
Bsu36I	CCTNAGG	1 cut(s)	712
BsuRI	GGCC	3 cut(s)	77, 261, 649
BtgI	CCRYGG	2 cut(s)	78, 480
BtgZI	GCGATG	1 cut(s)	1052
BtsCI	GGATG	2 cut(s)	23, 537
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	75, 216
Cac8I	GCNNGC	1 cut(s)	310
CaiI	CAGNNNCTG	1 cut(s)	491
CfoI	GCGC	3 cut(s)	197, 630, 747
Cfr13I	GGNCC	3 cut(s)	156, 181, 935
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	38, 990
CviAII	CATG	8 cut(s)	58, 206, 326, 581, 656, 835, 872, 944
CviQI	GTAC	2 cut(s)	38, 990
DdeI	CTNAG	3 cut(s)	270, 712, 964
DpnI	GATC	6 cut(s)	33, 89, 366, 375, 516, 1064
DpnII	GATC	6 cut(s)	31, 87, 364, 373, 514, 1062
DriI	GACNNNNNGTC	1 cut(s)	802
EaeI	YGGCCR	2 cut(s)	75, 647
EagI	CGGCCG	1 cut(s)	647
Eam1104I	CTCTTC	3 cut(s)	411, 884, 915
Eam1105I	GACNNNNNGTC	1 cut(s)	802
EarI	CTCTTC	3 cut(s)	411, 884, 915
EciI	GGCGGA	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	647
Eco130I	CCWWGG	3 cut(s)	256, 811, 1022
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	3 cut(s)	156, 181, 935
Eco47III	AGCGCT	2 cut(s)	196, 629
Eco52I	CGGCCG	1 cut(s)	647
Eco57I	CTGAAG	4 cut(s)	414, 465, 891, 966
Eco81I	CCTNAGG	1 cut(s)	712
Eco88I	CYCGRG	2 cut(s)	176, 663
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	1042
EcoT14I	CCWWGG	3 cut(s)	256, 811, 1022
ErhI	CCWWGG	3 cut(s)	256, 811, 1022
FaeI	CATG	8 cut(s)	61, 209, 329, 584, 659, 838, 875, 947
FatI	CATG	8 cut(s)	57, 205, 325, 580, 655, 834, 871, 943
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	6 cut(s)	349, 486, 489, 644, 647, 753
FokI	GGATG	2 cut(s)	10, 544
Fsp4HI	GCNGC	6 cut(s)	349, 486, 489, 644, 647, 753
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	3 cut(s)	196, 629, 746
GluI	GCNGC	6 cut(s)	349, 486, 489, 644, 647, 753
GsaI	CCCAGC	2 cut(s)	156, 294
HaeII	RGCGCY	2 cut(s)	198, 631
HaeIII	GGCC	3 cut(s)	77, 261, 649
HapII	CCGG	2 cut(s)	53, 422
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	3 cut(s)	197, 630, 747
Hin1II	CATG	8 cut(s)	61, 209, 329, 584, 659, 838, 875, 947
Hin6I	GCGC	3 cut(s)	195, 628, 745
HinP1I	GCGC	3 cut(s)	195, 628, 745
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	65, 476, 859
HpaII	CCGG	2 cut(s)	53, 422
HphI	GGTGA	4 cut(s)	4, 42, 127, 244
Hpy166II	GTNNAC	6 cut(s)	38, 252, 390, 496, 796, 961
Hpy188I	TCNGA	3 cut(s)	445, 910, 985
Hpy188III	TCNNGA	6 cut(s)	106, 122, 368, 518, 569, 886
Hpy8I	GTNNAC	6 cut(s)	38, 252, 390, 496, 796, 961
Hpy99I	CGWCG	2 cut(s)	152, 317
HpyAV	CCTTC	2 cut(s)	353, 915
HpyCH4III	ACNGT	1 cut(s)	994
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	8 cut(s)	209, 464, 580, 740, 821, 871, 997, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 314, 345, 761
HpyF3I	CTNAG	3 cut(s)	270, 712, 964
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	8 cut(s)	61, 209, 329, 584, 659, 838, 875, 947
HspAI	GCGC	3 cut(s)	195, 628, 745
KpnI	GGTACC	1 cut(s)	993
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	31, 87, 364, 373, 514, 1062
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	284, 553
LpnPI	CCDG	8 cut(s)	66, 138, 276, 362, 435, 626, 699, 848
Lsp1109I	GCAGC	4 cut(s)	475, 497, 630, 739
LweI	GCATC	1 cut(s)	1058
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	5 cut(s)	48, 211, 400, 976, 1003
MalI	GATC	6 cut(s)	33, 89, 366, 375, 516, 1064
MboI	GATC	6 cut(s)	31, 87, 364, 373, 514, 1062
MluCI	AATT	4 cut(s)	508, 536, 596, 1042
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	805
MroXI	GAANNNNTTC	2 cut(s)	8, 858
MseI	TTAA	2 cut(s)	540, 969
MspA1I	CMGCKG	2 cut(s)	362, 488
MspI	CCGG	2 cut(s)	53, 422
MspR9I	CCNGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	158, 314, 345, 761
NciI	CCSGG	1 cut(s)	423
NdeII	GATC	6 cut(s)	31, 87, 364, 373, 514, 1062
NlaIII	CATG	8 cut(s)	61, 209, 329, 584, 659, 838, 875, 947
NlaIV	GGNNCC	4 cut(s)	157, 296, 555, 991
NmeAIII	GCCGAG	2 cut(s)	165, 675
NmuCI	GTSAC	3 cut(s)	48, 211, 1003
NspI	RCATGY	2 cut(s)	838, 875
PaeR7I	CTCGAG	1 cut(s)	176
PciI	ACATGT	1 cut(s)	834
PciSI	GCTCTTC	1 cut(s)	411
PdmI	GAANNNNTTC	2 cut(s)	8, 858
PfeI	GAWTC	2 cut(s)	476, 859
PkrI	GCNGC	6 cut(s)	350, 487, 490, 645, 648, 754
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	1 cut(s)	834
Psp5II	RGGWCCY	1 cut(s)	181
PspFI	CCCAGC	2 cut(s)	152, 290
PspN4I	GGNNCC	4 cut(s)	157, 296, 555, 991
PspPI	GGNCC	3 cut(s)	156, 181, 935
PspPPI	RGGWCCY	1 cut(s)	181
PspXI	VCTCGAGB	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	491
PvuII	CAGCTG	2 cut(s)	362, 488
RsaI	GTAC	2 cut(s)	39, 991
RsaNI	GTAC	2 cut(s)	38, 990
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	540, 969
SatI	GCNGC	6 cut(s)	349, 486, 489, 644, 647, 753
Sau3AI	GATC	6 cut(s)	31, 87, 364, 373, 514, 1062
Sau96I	GGNCC	3 cut(s)	156, 181, 935
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	423
SfaNI	GCATC	1 cut(s)	1058
SfcI	CTRYAG	1 cut(s)	756
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	3 cut(s)	156, 181, 935
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	2 cut(s)	41, 176
SmoI	CTYRAG	2 cut(s)	41, 176
Sse9I	AATT	4 cut(s)	508, 536, 596, 1042
SsiI	CCGC	5 cut(s)	159, 282, 310, 349, 646
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	3 cut(s)	256, 811, 1022
TaaI	ACNGT	1 cut(s)	994
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	3 cut(s)	177, 501, 519
TasI	AATT	4 cut(s)	508, 536, 596, 1042
TatI	WGTACW	1 cut(s)	37
TauI	GCSGC	2 cut(s)	351, 649
TfiI	GAWTC	2 cut(s)	476, 859
Tru1I	TTAA	2 cut(s)	540, 969
Tru9I	TTAA	2 cut(s)	540, 969
TscAI	CASTG	2 cut(s)	75, 216
TseFI	GTSAC	3 cut(s)	48, 211, 1003
TseI	GCWGC	4 cut(s)	485, 488, 643, 752
Tsp45I	GTSAC	3 cut(s)	48, 211, 1003
TspDTI	ATGAA	6 cut(s)	17, 74, 311, 548, 1029, 1055
TspGWI	ACGGA	3 cut(s)	136, 469, 1055
TspRI	CASTG	2 cut(s)	75, 216
VpaK11BI	GGWCC	3 cut(s)	156, 181, 935
XapI	RAATTY	3 cut(s)	508, 536, 1042
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	2 cut(s)	838, 875
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	960
XmnI	GAANNNNTTC	2 cut(s)	8, 858
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.