Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0022478

Physical Location & Seq

Genomic Coordinates Forward (+)

13794015 .. 13798795

Gene Structure 4781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G219500.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGAAGAAAGCCTTCACCACCCCAACATCCCTTGATCGTGAACTCGAGCCGTCGCCGGATATGAAAGAGAGAGTGACAGCCGTGGAGAAGATCGTCGGCTACAGCTTCAAGAACAAGAGGCTTCTAGAAGAAGCTCTCACCCACTCCTCCTTCCCTTGGTCCGCTTCGTATCAACGTCTCGAGGTCCTCGGCGACAGTGTTCTGAACCACGCAGTCACCAACTACTTTTTTTGTATGGCTGACCGCCGGAAGTTCAACGAAGACCAAATCACTAAGCTACGCTCCGCTAATGCTGGCAACCTCAAGCTCGCCCGCGTCGCTGTTCGCCTTGGGCTTTATCCCTACCTTCGCCGCTACAATACACCTGGTCTTGATGATAAGATTAAGGAGTTTATCGAAGCAGTAATTAATGGAGAAGACGAGACGGGGCTTGTACATAAGGTTCTTGCTGATATTGTTGAGTCCGTGGCAGCTGCTATTTACGTTGACTTGAAATTTGATCTCGATAAACTATGGATGATTTTTAAGCCTCTTTTGGAGCCTATATATACTCTTGAGGACTTGCGTGGTCGCCCCATGGCAATATTGTATGACTTTTGCCTGAAGAAAGGGAAGCGCCTTGAGATCAAGCTGAAGCCAAGAGATGAGACTGAAAATATAAGTATTGCTGGTGTCTTTGTTGGTGACGTGCTTGTTGGCTCGGGTTCTTCTAAGGGGAATAGTAATGCAAGGCAGAATGCTGCTAAAGAAGCTGTACATAAGTTGTCGCAATCGATGGTTGTAAACGATGGGTCCTTCGAAGGTATTCCAGCTGGAAACGACAGGTCATTTCGTATTGAAGAAGCGATGCAAATGTTGCATGTGCTTTGTGCCAAGAAGAGGTTGCCTAAACCTCCAGAGTACAAAGAAGACGTGTTAGGTCCTCCACATGAGAGGAAATATTTATACTCAGTTAAAGTGGTAACTTCAGATGATACCGTGAAATCTGTGACGGGAGATGAAAAGTCAAGAAAAAAATATGCAATGAATTCTGCAGCTTACAAGATGTTCCTTGCTTTACAAGAACATTATAATATGATCAACACCATAAAGTCTTATAGAATGATCAACAGAAAAGAAGCTGATAATATGATCGACACCAAAGACACTGATCGTATGATCTGCTGGCGAGATATCCTAGTTCTATTAGGATATTTCATTCTTATTCTATTAGGATTTTATTTATTTCCTGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

413

Amino Acids

46.99

Weight (kDa)

8.92

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022478)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G219300_v2.0.a1 Prupe.4G219500_v2.0.a1 Prupe.4G219600_v2.0.a1 Prupe.4G219600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1071
AccII	CGCG	1 cut(s)	315
AciI	CCGC	5 cut(s)	162, 244, 285, 313, 352
AcsI	RAATTY	2 cut(s)	494, 1027
AcuI	CTGAAG	3 cut(s)	623, 653, 951
AfaI	GTAC	3 cut(s)	435, 756, 902
AfiI	CCNNNNNNNGG	2 cut(s)	156, 879
AflIII	ACRYGT	1 cut(s)	912
AgsI	TTSAA	4 cut(s)	109, 256, 493, 839
AjiI	CACGTC	2 cut(s)	688, 913
AjnI	CCWGG	1 cut(s)	364
Alw26I	GTCTC	3 cut(s)	182, 416, 641
Ama87I	CYCGRG	3 cut(s)	44, 179, 700
ApeKI	GCWGC	4 cut(s)	470, 473, 740, 1034
ApoI	RAATTY	2 cut(s)	494, 1027
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AseI	ATTAAT	1 cut(s)	408
Asp700I	GAANNNNTTC	2 cut(s)	11, 804
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	4 cut(s)	159, 184, 792, 920
AsuHPI	GGTGA	4 cut(s)	7, 130, 208, 695
AsuII	TTCGAA	1 cut(s)	798
AvaI	CYCGRG	3 cut(s)	44, 179, 700
AvaII	GGWCC	4 cut(s)	159, 184, 792, 920
BbsI	GAAGAC	3 cut(s)	267, 423, 915
BbvI	GCAGC	4 cut(s)	460, 482, 727, 1046
BccI	CCATC	2 cut(s)	769, 782
BceAI	ACGGC	2 cut(s)	34, 65
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	2 cut(s)	1077, 1104
BcoDI	GTCTC	3 cut(s)	182, 416, 641
BfaI	CTAG	2 cut(s)	125, 1178
BfmI	CTRYAG	2 cut(s)	100, 1032
BfoI	RGCGCY	1 cut(s)	619
BisI	GCNGC	5 cut(s)	352, 471, 474, 741, 1035
BlsI	GCNGC	5 cut(s)	353, 472, 475, 742, 1036
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	4 cut(s)	159, 184, 792, 920
BmeT110I	CYCGRG	3 cut(s)	44, 179, 700
BmgBI	CACGTC	2 cut(s)	688, 913
BmgT120I	GGNCC	4 cut(s)	159, 184, 792, 920
BmiI	GGNNCC	2 cut(s)	540, 793
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	837
BpiI	GAAGAC	3 cut(s)	267, 423, 915
BpmI	CTGGAG	1 cut(s)	879
Bpu14I	TTCGAA	1 cut(s)	798
BpuEI	CTTGAG	3 cut(s)	287, 575, 641
Bsa29I	ATCGAT	1 cut(s)	773
BsaJI	CCNNGG	6 cut(s)	81, 155, 187, 328, 465, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 879
Bse3DI	GCAATG	1 cut(s)	1029
BseBI	CCWGG	1 cut(s)	366
BseCI	ATCGAT	1 cut(s)	773
BseDI	CCNNGG	6 cut(s)	81, 155, 187, 328, 465, 576
BseGI	GGATG	2 cut(s)	26, 522
BseLI	CCNNNNNNNGG	2 cut(s)	156, 879
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	1 cut(s)	963
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	4 cut(s)	460, 482, 727, 1046
Bsh1236I	CGCG	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	773
BsiHKCI	CYCGRG	3 cut(s)	44, 179, 700
BsiSI	CCGG	2 cut(s)	56, 247
BslI	CCNNNNNNNGG	2 cut(s)	156, 879
BsmAI	GTCTC	3 cut(s)	182, 416, 641
BsmBI	CGTCTC	2 cut(s)	182, 416
BsmI	GAATGC	1 cut(s)	742
BsoBI	CYCGRG	3 cut(s)	44, 179, 700
Bsp119I	TTCGAA	1 cut(s)	798
Bsp1407I	TGTACA	2 cut(s)	433, 754
Bsp143I	GATC	9 cut(s)	34, 90, 499, 624, 1077, 1104, 1131, 1150, 1158
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	5 cut(s)	162, 244, 285, 313, 352
BspCNI	CTCAG	1 cut(s)	962
BspDI	ATCGAT	1 cut(s)	773
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	540, 793
BspMAI	CTGCAG	1 cut(s)	1036
BspT104I	TTCGAA	1 cut(s)	798
BsrDI	GCAATG	1 cut(s)	1029
BsrGI	TGTACA	2 cut(s)	433, 754
BssECI	CCNNGG	6 cut(s)	81, 155, 187, 328, 465, 576
BssMI	GATC	9 cut(s)	34, 90, 499, 624, 1077, 1104, 1131, 1150, 1158
BssT1I	CCWWGG	3 cut(s)	155, 328, 576
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	197, 979
Bst6I	CTCTTC	1 cut(s)	872
BstAPI	GCANNNNNTGC	1 cut(s)	856
BstAUI	TGTACA	2 cut(s)	433, 754
BstBI	TTCGAA	1 cut(s)	798
BstC8I	GCNNGC	4 cut(s)	295, 309, 313, 1166
BstDEI	CTNAG	3 cut(s)	273, 711, 949
BstDSI	CCRYGG	3 cut(s)	81, 465, 576
BstF5I	GGATG	2 cut(s)	26, 522
BstFNI	CGCG	1 cut(s)	315
BstH2I	RGCGCY	1 cut(s)	619
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	9 cut(s)	37, 93, 502, 627, 1080, 1107, 1134, 1153, 1161
BstMAI	GTCTC	3 cut(s)	182, 416, 641
BstMBI	GATC	9 cut(s)	34, 90, 499, 624, 1077, 1104, 1131, 1150, 1158
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 749, 856
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	2 cut(s)	100, 1032
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	4 cut(s)	460, 482, 727, 1046
BstV2I	GAAGAC	3 cut(s)	267, 423, 915
Bsu15I	ATCGAT	1 cut(s)	773
BsuTUI	ATCGAT	1 cut(s)	773
BtgI	CCRYGG	3 cut(s)	81, 465, 576
BtgZI	GCGATG	1 cut(s)	860
BtrI	CACGTC	2 cut(s)	688, 913
BtsCI	GGATG	2 cut(s)	26, 522
BtsIMutI	CAGTG	2 cut(s)	202, 1146
Cac8I	GCNNGC	4 cut(s)	295, 309, 313, 1166
CfoI	GCGC	1 cut(s)	618
Cfr13I	GGNCC	4 cut(s)	159, 184, 792, 920
ClaI	ATCGAT	1 cut(s)	773
CseI	GACGC	1 cut(s)	304
CsiI	ACCWGGT	1 cut(s)	364
Csp6I	GTAC	3 cut(s)	434, 755, 901
CviAII	CATG	3 cut(s)	577, 860, 929
CviQI	GTAC	3 cut(s)	434, 755, 901
DdeI	CTNAG	3 cut(s)	273, 711, 949
DpnI	GATC	9 cut(s)	36, 92, 501, 626, 1079, 1106, 1133, 1152, 1160
DpnII	GATC	9 cut(s)	34, 90, 499, 624, 1077, 1104, 1131, 1150, 1158
Eam1104I	CTCTTC	1 cut(s)	872
EarI	CTCTTC	1 cut(s)	872
Eco130I	CCWWGG	3 cut(s)	155, 328, 576
Eco32I	GATATC	1 cut(s)	1174
Eco47I	GGWCC	4 cut(s)	159, 184, 792, 920
Eco57I	CTGAAG	3 cut(s)	623, 653, 951
Eco88I	CYCGRG	3 cut(s)	44, 179, 700
EcoO109I	RGGNCCY	3 cut(s)	184, 792, 920
EcoRI	GAATTC	1 cut(s)	1027
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	1174
EcoT14I	CCWWGG	3 cut(s)	155, 328, 576
ErhI	CCWWGG	3 cut(s)	155, 328, 576
Esp3I	CGTCTC	2 cut(s)	182, 416
FaeI	CATG	3 cut(s)	580, 863, 932
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	3 cut(s)	576, 859, 928
FauI	CCCGC	1 cut(s)	320
FbaI	TGATCA	2 cut(s)	1077, 1104
Fnu4HI	GCNGC	5 cut(s)	352, 471, 474, 741, 1035
FokI	GGATG	2 cut(s)	13, 529
Fsp4HI	GCNGC	5 cut(s)	352, 471, 474, 741, 1035
FspBI	CTAG	2 cut(s)	125, 1178
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	5 cut(s)	352, 471, 474, 741, 1035
GsuI	CTGGAG	1 cut(s)	879
HaeII	RGCGCY	1 cut(s)	619
HapII	CCGG	2 cut(s)	56, 247
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	3 cut(s)	580, 863, 932
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	2 cut(s)	56, 247
HphI	GGTGA	4 cut(s)	7, 130, 208, 695
Hpy166II	GTNNAC	3 cut(s)	41, 487, 784
Hpy188I	TCNGA	2 cut(s)	204, 970
Hpy188III	TCNNGA	9 cut(s)	38, 109, 125, 179, 371, 503, 554, 896, 1008
Hpy8I	GTNNAC	3 cut(s)	41, 487, 784
Hpy99I	CGWCG	3 cut(s)	55, 98, 320
HpyAV	CCTTC	5 cut(s)	22, 160, 356, 794, 805
HpyCH4III	ACNGT	2 cut(s)	197, 979
HpyCH4IV	ACGT	4 cut(s)	175, 483, 687, 912
HpyCH4V	TGCA	5 cut(s)	728, 850, 859, 1022, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 749, 856
HpyF3I	CTNAG	3 cut(s)	273, 711, 949
HpySE526I	ACGT	4 cut(s)	175, 483, 687, 912
Hsp92II	CATG	3 cut(s)	580, 863, 932
HspAI	GCGC	1 cut(s)	616
Ksp22I	TGATCA	2 cut(s)	1077, 1104
Kzo9I	GATC	9 cut(s)	34, 90, 499, 624, 1077, 1104, 1131, 1150, 1158
LmnI	GCTCC	2 cut(s)	287, 538
Lsp1109I	GCAGC	4 cut(s)	460, 482, 727, 1046
LweI	GCATC	1 cut(s)	837
MabI	ACCWGGT	1 cut(s)	364
MaeI	CTAG	2 cut(s)	125, 1178
MaeII	ACGT	4 cut(s)	175, 483, 687, 912
MaeIII	GTNAC	5 cut(s)	73, 214, 683, 961, 988
MalI	GATC	9 cut(s)	36, 92, 501, 626, 1079, 1106, 1133, 1152, 1160
MboI	GATC	9 cut(s)	34, 90, 499, 624, 1077, 1104, 1131, 1150, 1158
MluCI	AATT	3 cut(s)	405, 494, 1027
MlyI	GAGTC	1 cut(s)	470
MroXI	GAANNNNTTC	2 cut(s)	11, 804
MseI	TTAA	4 cut(s)	384, 408, 525, 954
MspA1I	CMGCKG	2 cut(s)	473, 812
MspI	CCGG	2 cut(s)	56, 247
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	317, 749, 856
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	9 cut(s)	34, 90, 499, 624, 1077, 1104, 1131, 1150, 1158
NlaIII	CATG	3 cut(s)	580, 863, 932
NlaIV	GGNNCC	2 cut(s)	540, 793
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	4 cut(s)	73, 214, 683, 988
NspI	RCATGY	1 cut(s)	863
NspV	TTCGAA	1 cut(s)	798
PaeR7I	CTCGAG	2 cut(s)	44, 179
PctI	GAATGC	1 cut(s)	742
PdmI	GAANNNNTTC	2 cut(s)	11, 804
PkrI	GCNGC	5 cut(s)	353, 472, 475, 742, 1036
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PpuMI	RGGWCCY	3 cut(s)	184, 792, 920
PshBI	ATTAAT	1 cut(s)	408
PsiI	TTATAA	1 cut(s)	1071
Psp5II	RGGWCCY	3 cut(s)	184, 792, 920
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	540, 793
PspPI	GGNCC	4 cut(s)	159, 184, 792, 920
PspPPI	RGGWCCY	3 cut(s)	184, 792, 920
PspXI	VCTCGAGB	1 cut(s)	44
PsrI	GAACNNNNNNTAC	2 cut(s)	426, 458
PstI	CTGCAG	1 cut(s)	1036
PvuII	CAGCTG	2 cut(s)	473, 812
RsaI	GTAC	3 cut(s)	435, 756, 902
RsaNI	GTAC	3 cut(s)	434, 755, 901
SaqAI	TTAA	4 cut(s)	384, 408, 525, 954
SatI	GCNGC	5 cut(s)	352, 471, 474, 741, 1035
Sau3AI	GATC	9 cut(s)	34, 90, 499, 624, 1077, 1104, 1131, 1150, 1158
Sau96I	GGNCC	4 cut(s)	159, 184, 792, 920
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	1 cut(s)	366
SexAI	ACCWGGT	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	837
SfcI	CTRYAG	2 cut(s)	100, 1032
Sfr274I	CTCGAG	2 cut(s)	44, 179
SfuI	TTCGAA	1 cut(s)	798
SinI	GGWCC	4 cut(s)	159, 184, 792, 920
SlaI	CTCGAG	2 cut(s)	44, 179
SmlI	CTYRAG	5 cut(s)	44, 179, 302, 554, 620
SmoI	CTYRAG	5 cut(s)	44, 179, 302, 554, 620
Sse9I	AATT	3 cut(s)	405, 494, 1027
SsiI	CCGC	5 cut(s)	162, 244, 285, 313, 352
SspI	AATATT	2 cut(s)	585, 941
SspMI	CTAG	2 cut(s)	125, 1178
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	3 cut(s)	155, 328, 576
TaaI	ACNGT	2 cut(s)	197, 979
TaiI	ACGT	4 cut(s)	178, 486, 690, 915
TaqI	TCGA	7 cut(s)	45, 180, 396, 504, 773, 798, 1134
TasI	AATT	3 cut(s)	405, 494, 1027
TatI	WGTACW	3 cut(s)	433, 754, 900
TauI	GCSGC	1 cut(s)	354
Tru1I	TTAA	4 cut(s)	384, 408, 525, 954
Tru9I	TTAA	4 cut(s)	384, 408, 525, 954
TscAI	CASTG	2 cut(s)	202, 1153
TseFI	GTSAC	4 cut(s)	73, 214, 683, 988
TseI	GCWGC	4 cut(s)	470, 473, 740, 1034
Tsp45I	GTSAC	4 cut(s)	73, 214, 683, 988
TspDTI	ATGAA	5 cut(s)	17, 77, 1014, 1040, 1186
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	2 cut(s)	202, 1153
VpaK11BI	GGWCC	4 cut(s)	159, 184, 792, 920
VspI	ATTAAT	1 cut(s)	408
XapI	RAATTY	2 cut(s)	494, 1027
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	1 cut(s)	863
XhoI	CTCGAG	2 cut(s)	44, 179
XmnI	GAANNNNTTC	2 cut(s)	11, 804
XspI	CTAG	2 cut(s)	125, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.