Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0022478

Physical Location & Seq

Genomic Coordinates Forward (+)

13799183 .. 13801327

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G219600.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGACGAAGGTCTTCACCACCCCAACATCCCTTGATCGTGTACGATCACCGGAAATGAAAGATTCAGTGACAGCCGTGGAGAAGATCGTCGGCTACAACTTCAAGAACAAGAAGCTTCTAGAAGAAGCTCTCACCCACCCCTCCTATGGGTCCGCTTCGTATAAACGCCTTGGCCTTGCGACCCTTGGCGATAGCGCTCTTGGCCATGCAGTGACCAACCACTTCTTTTGTATGGCTGACCACCCTCAGTTCAGCGAAGGCCAACTCACTTTGCTACGCTCTGCCAATGTTAGCAACCACAAACTCGCCTGCGTCGCTGTTCGTCATGGGCTTTATCGCTACCTTCGCCACTATGAACCTGCTTTTGATGATAAAATTGAGGAGTTTATTGAAGCTTTAATTAATGGAGAAGAAGACGTGGGGTTTGTTGAGGCCGATGAACCCAAGGTTCTTGCAGATATTGTTGAGTCCGTGGCAGCTGCTATTTACATTGAGTTAAATTTTGATCTCGATAAACTATGGATGAAATTTAAGCCTCTTTTGGAACCTATATATACTCTTGAAAACTTGCAAGGTCACCCCATGACAATATTGAAAGAGTTTTGCGAGAAGAGCAGGAAGCGCCTTGAAGTGCGGCTGAGAGATGAGACCGGAAATATAAGTATTGCTGATGTCTATGTTGATGGACTGCTTAAGGGATCGGGTTCTGCTAAACGGAAGAATACCGCACAGCATATTGCTGCTCAACAAGCTATACAAAAGTTGTCGCAATCGATGGGTGTAAACAACAAAGGTACAGCAGCTGGAAACGACAACTCATTTCGTATAGAAGAAGCGATGAATGAGTTGCATGTGCGTTGTGAAAAGAAGAGGTTGCCTAAACCAGATTACAGAGAAGAGAAGAAATCAGGTCCTCCACATTCACCCAAATTTGTATACTCAGTTAAAGTGGTAACTTTAGATGGTACCGTGAAATCTGTGAAGGGAGATGAAAAGTCAAGAATACAATATGCGAAGAATTCTGCAGCTCACAAGATGATCCTTACTTTACAAGAATATGATAATGTGATCAAAACCAAAGAATCCGATTGCGTAATGGGTAATATTCCCTCACTCTACACACTTGGGGCTAAGGCCTATAGGGTGATAAGAAGTCTCTTGGTTTTTTGTTTGAAGGGAATACTTACACTAGTTATTGTCTCTGTTTTGGCCAGCTTAGTTGCTGAGCGGTATAAATTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

415

Amino Acids

46.37

Weight (kDa)

8.85

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022478)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G219300_v2.0.a1 Prupe.4G219500_v2.0.a1 Prupe.4G219600_v2.0.a1 Prupe.4G219600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
Acc65I	GGTACC	1 cut(s)	965
AccB1I	GGYRCC	1 cut(s)	965
AccBSI	CCGCTC	1 cut(s)	1228
AccI	GTMKAC	1 cut(s)	936
AciI	CCGC	4 cut(s)	153, 634, 726, 1228
AclWI	GGATC	2 cut(s)	706, 1033
AcoI	YGGCCR	2 cut(s)	202, 1209
AcsI	RAATTY	5 cut(s)	499, 527, 929, 1018, 1235
AfaI	GTAC	3 cut(s)	42, 796, 967
AfeI	AGCGCT	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	146, 147
AflII	CTTAAG	1 cut(s)	692
AgsI	TTSAA	6 cut(s)	103, 392, 563, 595, 629, 1174
AhlI	ACTAGT	1 cut(s)	1189
AjiI	CACGTC	1 cut(s)	418
AluBI	AGCT	8 cut(s)	115, 128, 395, 479, 752, 803, 1028, 1215
AluI	AGCT	8 cut(s)	115, 128, 395, 479, 752, 803, 1028, 1215
Alw26I	GTCTC	3 cut(s)	641, 1160, 1204
AlwI	GGATC	2 cut(s)	706, 1033
AlwNI	CAGNNNCTG	1 cut(s)	803
Aor51HI	AGCGCT	1 cut(s)	196
AoxI	GGCC	6 cut(s)	172, 202, 259, 432, 1134, 1209
ApeKI	GCWGC	5 cut(s)	476, 479, 740, 800, 1025
ApoI	RAATTY	5 cut(s)	499, 527, 929, 1018, 1235
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AseI	ATTAAT	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	11
Asp718I	GGTACC	1 cut(s)	965
AspLEI	GCGC	2 cut(s)	197, 624
AspS9I	GGNCC	2 cut(s)	150, 911
AsuHPI	GGTGA	6 cut(s)	7, 39, 124, 569, 915, 1156
AvaII	GGWCC	2 cut(s)	150, 911
BalI	TGGCCA	2 cut(s)	204, 1211
BanI	GGYRCC	1 cut(s)	965
BbsI	GAAGAC	2 cut(s)	4, 420
BbvI	GCAGC	5 cut(s)	466, 488, 727, 812, 1037
BccI	CCATC	3 cut(s)	677, 769, 956
BceAI	ACGGC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	1068
BcoDI	GTCTC	3 cut(s)	641, 1160, 1204
BcuI	ACTAGT	1 cut(s)	1189
BfaI	CTAG	2 cut(s)	119, 1190
BfmI	CTRYAG	2 cut(s)	1023, 1138
BfoI	RGCGCY	2 cut(s)	198, 625
BfrI	CTTAAG	1 cut(s)	692
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	6 cut(s)	477, 480, 635, 741, 801, 1026
BlpI	GCTNAGC	1 cut(s)	1224
BlsI	GCNGC	6 cut(s)	478, 481, 636, 742, 802, 1027
Bme18I	GGWCC	2 cut(s)	150, 911
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	150, 911
BmiI	GGNNCC	3 cut(s)	151, 546, 967
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	2 cut(s)	4, 420
Bpu10I	CCTNAGC	1 cut(s)	1131
Bpu1102I	GCTNAGC	1 cut(s)	1224
Bsa29I	ATCGAT	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	641
BsaJI	CCNNGG	5 cut(s)	75, 169, 184, 444, 471
BsaWI	WCCGGW	2 cut(s)	49, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 147
BseCI	ATCGAT	1 cut(s)	773
BseDI	CCNNGG	5 cut(s)	75, 169, 184, 444, 471
BseGI	GGATG	2 cut(s)	26, 528
BseLI	CCNNNNNNNGG	2 cut(s)	146, 147
BseMII	CTCAG	4 cut(s)	260, 629, 954, 1215
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	5 cut(s)	466, 488, 727, 812, 1037
BshFI	GGCC	6 cut(s)	174, 204, 261, 434, 1136, 1211
BshNI	GGYRCC	1 cut(s)	965
BshVI	ATCGAT	1 cut(s)	773
BsiSI	CCGG	2 cut(s)	50, 651
BslI	CCNNNNNNNGG	2 cut(s)	146, 147
BsmAI	GTCTC	3 cut(s)	641, 1160, 1204
BsnI	GGCC	6 cut(s)	174, 204, 261, 434, 1136, 1211
Bso31I	GGTCTC	1 cut(s)	641
Bsp143I	GATC	7 cut(s)	34, 44, 84, 505, 698, 1038, 1068
Bsp1720I	GCTNAGC	1 cut(s)	1224
BspACI	CCGC	4 cut(s)	153, 634, 726, 1228
BspANI	GGCC	6 cut(s)	174, 204, 261, 434, 1136, 1211
BspCNI	CTCAG	4 cut(s)	259, 630, 953, 1216
BspDI	ATCGAT	1 cut(s)	773
BspLI	GGNNCC	3 cut(s)	151, 546, 967
BspMAI	CTGCAG	1 cut(s)	1027
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	2 cut(s)	706, 1033
BspQI	GCTCTTC	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	965
BspTI	CTTAAG	1 cut(s)	692
BspTNI	GGTCTC	1 cut(s)	641
BsrBI	CCGCTC	1 cut(s)	1228
BssECI	CCNNGG	5 cut(s)	75, 169, 184, 444, 471
BssMI	GATC	7 cut(s)	34, 44, 84, 505, 698, 1038, 1068
BssNAI	GTATAC	1 cut(s)	937
BssT1I	CCWWGG	3 cut(s)	169, 184, 444
Bst1107I	GTATAC	1 cut(s)	937
Bst4CI	ACNGT	1 cut(s)	970
Bst6I	CTCTTC	3 cut(s)	605, 863, 891
BstAFI	CTTAAG	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	310, 1213
BstDEI	CTNAG	6 cut(s)	246, 638, 940, 1131, 1216, 1224
BstDSI	CCRYGG	2 cut(s)	75, 471
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	2 cut(s)	26, 528
BstH2I	RGCGCY	2 cut(s)	198, 625
BstHHI	GCGC	2 cut(s)	197, 624
BstKTI	GATC	7 cut(s)	37, 47, 87, 508, 701, 1041, 1071
BstMAI	GTCTC	3 cut(s)	641, 1160, 1204
BstMBI	GATC	7 cut(s)	34, 44, 84, 505, 698, 1038, 1068
BstMWI	GCNNNNNNNGC	6 cut(s)	201, 314, 345, 612, 621, 749
BstNSI	RCATGY	1 cut(s)	854
BstPAI	GACNNNNGTC	1 cut(s)	8
BstPI	GGTNACC	1 cut(s)	575
BstSFI	CTRYAG	2 cut(s)	1023, 1138
BstV1I	GCAGC	5 cut(s)	466, 488, 727, 812, 1037
BstV2I	GAAGAC	2 cut(s)	4, 420
BstZ17I	GTATAC	1 cut(s)	937
Bsu15I	ATCGAT	1 cut(s)	773
BsuRI	GGCC	6 cut(s)	174, 204, 261, 434, 1136, 1211
BsuTUI	ATCGAT	1 cut(s)	773
BtgI	CCRYGG	2 cut(s)	75, 471
BtgZI	GCGATG	1 cut(s)	851
BtrI	CACGTC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	26, 528
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	72, 216
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	310, 1213
CaiI	CAGNNNCTG	1 cut(s)	803
CfoI	GCGC	2 cut(s)	197, 624
Cfr13I	GGNCC	2 cut(s)	150, 911
ClaI	ATCGAT	1 cut(s)	773
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	3 cut(s)	41, 795, 966
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	4 cut(s)	206, 326, 583, 851
CviQI	GTAC	3 cut(s)	41, 795, 966
DdeI	CTNAG	6 cut(s)	246, 638, 940, 1131, 1216, 1224
DpnI	GATC	7 cut(s)	36, 46, 86, 507, 700, 1040, 1070
DpnII	GATC	7 cut(s)	34, 44, 84, 505, 698, 1038, 1068
EaeI	YGGCCR	2 cut(s)	202, 1209
Eam1104I	CTCTTC	3 cut(s)	605, 863, 891
EarI	CTCTTC	3 cut(s)	605, 863, 891
Eco130I	CCWWGG	3 cut(s)	169, 184, 444
Eco147I	AGGCCT	1 cut(s)	1136
Eco31I	GGTCTC	1 cut(s)	641
Eco47I	GGWCC	2 cut(s)	150, 911
Eco47III	AGCGCT	1 cut(s)	196
Eco91I	GGTNACC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	911
EcoO65I	GGTNACC	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	1018
EcoT14I	CCWWGG	3 cut(s)	169, 184, 444
ErhI	CCWWGG	3 cut(s)	169, 184, 444
FaeI	CATG	4 cut(s)	209, 329, 586, 854
FatI	CATG	4 cut(s)	205, 325, 582, 850
FbaI	TGATCA	1 cut(s)	1068
FblI	GTMKAC	1 cut(s)	936
Fnu4HI	GCNGC	6 cut(s)	477, 480, 635, 741, 801, 1026
FokI	GGATG	2 cut(s)	13, 535
Fsp4HI	GCNGC	6 cut(s)	477, 480, 635, 741, 801, 1026
FspBI	CTAG	2 cut(s)	119, 1190
GlaI	GCGC	2 cut(s)	196, 623
GluI	GCNGC	6 cut(s)	477, 480, 635, 741, 801, 1026
HaeII	RGCGCY	2 cut(s)	198, 625
HaeIII	GGCC	6 cut(s)	174, 204, 261, 434, 1136, 1211
HapII	CCGG	2 cut(s)	50, 651
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	2 cut(s)	197, 624
Hin1II	CATG	4 cut(s)	209, 329, 586, 854
Hin6I	GCGC	2 cut(s)	195, 622
HinP1I	GCGC	2 cut(s)	195, 622
HindIII	AAGCTT	2 cut(s)	113, 393
HinfI	GANTC	3 cut(s)	62, 467, 1082
HpaII	CCGG	2 cut(s)	50, 651
HphI	GGTGA	6 cut(s)	7, 39, 124, 569, 915, 1156
Hpy166II	GTNNAC	3 cut(s)	41, 784, 937
Hpy188I	TCNGA	1 cut(s)	1087
Hpy188III	TCNNGA	5 cut(s)	103, 119, 509, 560, 999
Hpy8I	GTNNAC	3 cut(s)	41, 784, 937
Hpy99I	CGWCG	2 cut(s)	92, 317
HpyAV	CCTTC	4 cut(s)	251, 353, 976, 1168
HpyCH4III	ACNGT	1 cut(s)	970
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	209, 455, 571, 850, 1025
HpyF10VI	GCNNNNNNNGC	6 cut(s)	201, 314, 345, 612, 621, 749
HpyF3I	CTNAG	6 cut(s)	246, 638, 940, 1131, 1216, 1224
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	4 cut(s)	209, 329, 586, 854
HspAI	GCGC	2 cut(s)	195, 622
KpnI	GGTACC	1 cut(s)	969
Ksp22I	TGATCA	1 cut(s)	1068
Kzo9I	GATC	7 cut(s)	34, 44, 84, 505, 698, 1038, 1068
LguI	GCTCTTC	1 cut(s)	605
LpnPI	CCDG	9 cut(s)	63, 322, 372, 601, 664, 789, 894, 897, 1225
Lsp1109I	GCAGC	5 cut(s)	466, 488, 727, 812, 1037
MaeI	CTAG	2 cut(s)	119, 1190
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	4 cut(s)	67, 211, 575, 952
MalI	GATC	7 cut(s)	36, 46, 86, 507, 700, 1040, 1070
MbiI	CCGCTC	1 cut(s)	1228
MboI	GATC	7 cut(s)	34, 44, 84, 505, 698, 1038, 1068
MlsI	TGGCCA	2 cut(s)	204, 1211
MluCI	AATT	7 cut(s)	375, 399, 499, 527, 929, 1018, 1235
MluNI	TGGCCA	2 cut(s)	204, 1211
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	8 cut(s)	151, 255, 373, 424, 546, 864, 924, 1120
Mox20I	TGGCCA	2 cut(s)	204, 1211
MroXI	GAANNNNTTC	1 cut(s)	11
MscI	TGGCCA	2 cut(s)	204, 1211
MseI	TTAA	6 cut(s)	398, 402, 497, 531, 693, 945
Msp20I	TGGCCA	2 cut(s)	204, 1211
MspA1I	CMGCKG	2 cut(s)	479, 803
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	2 cut(s)	50, 651
MwoI	GCNNNNNNNGC	6 cut(s)	201, 314, 345, 612, 621, 749
NdeII	GATC	7 cut(s)	34, 44, 84, 505, 698, 1038, 1068
NlaIII	CATG	4 cut(s)	209, 329, 586, 854
NlaIV	GGNNCC	3 cut(s)	151, 546, 967
NmuCI	GTSAC	3 cut(s)	67, 211, 575
NspI	RCATGY	1 cut(s)	854
PacI	TTAATTAA	1 cut(s)	402
PceI	AGGCCT	1 cut(s)	1136
PciSI	GCTCTTC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	62, 1082
PkrI	GCNGC	6 cut(s)	478, 481, 636, 742, 802, 1027
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	911
PshAI	GACNNNNGTC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	911
PspEI	GGTNACC	1 cut(s)	575
PspN4I	GGNNCC	3 cut(s)	151, 546, 967
PspPI	GGNCC	2 cut(s)	150, 911
PspPPI	RGGWCCY	1 cut(s)	911
PstI	CTGCAG	1 cut(s)	1027
PstNI	CAGNNNCTG	1 cut(s)	803
PvuII	CAGCTG	2 cut(s)	479, 803
RsaI	GTAC	3 cut(s)	42, 796, 967
RsaNI	GTAC	3 cut(s)	41, 795, 966
SapI	GCTCTTC	1 cut(s)	605
SaqAI	TTAA	6 cut(s)	398, 402, 497, 531, 693, 945
SatI	GCNGC	6 cut(s)	477, 480, 635, 741, 801, 1026
Sau3AI	GATC	7 cut(s)	34, 44, 84, 505, 698, 1038, 1068
Sau96I	GGNCC	2 cut(s)	150, 911
SchI	GAGTC	1 cut(s)	476
SfcI	CTRYAG	2 cut(s)	1023, 1138
SinI	GGWCC	2 cut(s)	150, 911
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
SpeI	ACTAGT	1 cut(s)	1189
Sse9I	AATT	7 cut(s)	375, 399, 499, 527, 929, 1018, 1235
SseBI	AGGCCT	1 cut(s)	1136
SsiI	CCGC	4 cut(s)	153, 634, 726, 1228
SspI	AATATT	2 cut(s)	591, 1105
SspMI	CTAG	2 cut(s)	119, 1190
StuI	AGGCCT	1 cut(s)	1136
StyI	CCWWGG	3 cut(s)	169, 184, 444
TaaI	ACNGT	1 cut(s)	970
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	510, 773
TasI	AATT	7 cut(s)	375, 399, 499, 527, 929, 1018, 1235
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	2 cut(s)	62, 1082
Tru1I	TTAA	6 cut(s)	398, 402, 497, 531, 693, 945
Tru9I	TTAA	6 cut(s)	398, 402, 497, 531, 693, 945
TscAI	CASTG	2 cut(s)	72, 216
TseFI	GTSAC	3 cut(s)	67, 211, 575
TseI	GCWGC	5 cut(s)	476, 479, 740, 800, 1025
Tsp45I	GTSAC	3 cut(s)	67, 211, 575
TspDTI	ATGAA	6 cut(s)	71, 369, 453, 539, 854, 1005
TspGWI	ACGGA	2 cut(s)	460, 730
TspRI	CASTG	2 cut(s)	72, 216
Vha464I	CTTAAG	1 cut(s)	692
VpaK11BI	GGWCC	2 cut(s)	150, 911
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	5 cut(s)	499, 527, 929, 1018, 1235
XbaI	TCTAGA	1 cut(s)	118
XceI	RCATGY	1 cut(s)	854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	936
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	2 cut(s)	119, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.