Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13807289 .. 13809101

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G219700.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGGCTCTTCACCCGCCAACTCCAGCCATCACCGGAAATGAAAGAGCGGGTGACAGCCGTGGAGAGAATCGTAGGCTACGACTTCGTGGACAAGACGCTTCTAGAAGAAGCTCTCACCCACCCCTCCTCCTGTCGGCCCAATTCGTATCAACGCCTGGAGCTCCTGGGCGACAGCGCTCTCAACCACACAGTGACAAAGTACTTATTTCGTGACAGCCGGAAGTTCAACGAAGAAGAAATCACTAACCGACGCAAAGATACCGTTAGCAACCCCTACCTCGCCCGCATTGGTGCTCGGCTTGGGCTTTATGACTACCTTGTCCGCCACAATACACCTGATCTTGATGATCAGGTCGCAAAGTTTACTGAAGGAGTAATTAAAGGAAAAGATATGACGGGGTCTCCAGGCTACAAGGTTCTTGCAGATGTTGTCGAATCCGTGGCTGCTGCTGTTTACATTGACTTGAATTATGATCTCGATAAGCTGATGAAGATATTTAAGCCTCTTTTGGATCTCGAAAAATCTGATTCTATGATGAAGACGAAGGAATCGGATTCCATGTTGGGTTATATTGCCTCACTACTCTACACACTTGGGGCTAAGGCCTATAGCGTGATAATAAGTCTCTTGGTTTTTTGTTTGAGGGGAATAATACTGCTAGTTATCGTCTGTGTTTTGACTAAATTAATTGACTGTTTTGCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

237

Amino Acids

26.75

Weight (kDa)

7.61

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	49
AciI	CCGC	4 cut(s)	16, 49, 286, 325
AclWI	GGATC	1 cut(s)	522
AcuI	CTGAAG	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	203
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	229, 469
AjnI	CCWGG	3 cut(s)	156, 165, 406
AluBI	AGCT	3 cut(s)	113, 163, 487
AluI	AGCT	3 cut(s)	113, 163, 487
Alw21I	GWGCWC	2 cut(s)	165, 298
Alw26I	GTCTC	2 cut(s)	408, 632
AlwI	GGATC	1 cut(s)	522
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	2 cut(s)	137, 606
ApeKI	GCWGC	2 cut(s)	446, 449
AseI	ATTAAT	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	4 cut(s)	4, 24, 64, 109
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	2 cut(s)	165, 298
BbvI	GCAGC	2 cut(s)	433, 436
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	158, 167, 408
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	408, 632
BfaI	CTAG	2 cut(s)	104, 662
BfmI	CTRYAG	1 cut(s)	610
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	2 cut(s)	447, 450
BlsI	GCNGC	2 cut(s)	448, 451
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	3 cut(s)	158, 167, 408
BmgT120I	GGNCC	1 cut(s)	138
BmrFI	CCNGG	3 cut(s)	158, 167, 408
BpiI	GAAGAC	1 cut(s)	548
BpmI	CTGGAG	3 cut(s)	8, 179, 390
Bpu10I	CCTNAGC	1 cut(s)	603
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	60, 166, 441
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	158, 167, 408
BseDI	CCNNGG	3 cut(s)	60, 166, 441
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	433, 436
BshFI	GGCC	2 cut(s)	139, 608
BsiHKAI	GWGCWC	2 cut(s)	165, 298
BsiSI	CCGG	2 cut(s)	35, 220
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	408, 632
BsnI	GGCC	2 cut(s)	139, 608
Bso31I	GGTCTC	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	165, 298
Bsp143I	GATC	4 cut(s)	340, 349, 475, 514
BspACI	CCGC	4 cut(s)	16, 49, 286, 325
BspANI	GGCC	2 cut(s)	139, 608
BspPI	GGATC	1 cut(s)	522
BspQI	GCTCTTC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	408
BsrBI	CCGCTC	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	60, 166, 441
BssMI	GATC	4 cut(s)	340, 349, 475, 514
Bst2UI	CCWGG	3 cut(s)	158, 167, 408
Bst4CI	ACNGT	3 cut(s)	193, 265, 698
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	603, 705
BstDSI	CCRYGG	2 cut(s)	60, 441
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	4 cut(s)	343, 352, 478, 517
BstMAI	GTCTC	2 cut(s)	408, 632
BstMBI	GATC	4 cut(s)	340, 349, 475, 514
BstNI	CCWGG	3 cut(s)	158, 167, 408
BstSCI	CCNGG	3 cut(s)	156, 165, 406
BstSFI	CTRYAG	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	433, 436
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	139, 608
BtgI	CCRYGG	2 cut(s)	60, 441
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	2 cut(s)	106, 261
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	562
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	603, 705
DpnI	GATC	4 cut(s)	342, 351, 477, 516
DpnII	GATC	4 cut(s)	340, 349, 475, 514
DraIII	CACNNNGTG	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	408
Eco47III	AGCGCT	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	163
EcoRII	CCWGG	3 cut(s)	156, 165, 406
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	1 cut(s)	565
FaiI	YATR	7 cut(s)	312, 395, 474, 536, 563, 573, 612
FatI	CATG	1 cut(s)	561
FauI	CCCGC	3 cut(s)	23, 42, 293
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	447, 450
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	447, 450
FspBI	CTAG	2 cut(s)	104, 662
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	2 cut(s)	447, 450
GsuI	CTGGAG	3 cut(s)	8, 179, 390
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	139, 608
HapII	CCGG	2 cut(s)	35, 220
HgaI	GACGC	2 cut(s)	106, 261
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	565
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	5 cut(s)	69, 437, 530, 551, 557
HpaII	CCGG	2 cut(s)	35, 220
HphI	GGTGA	4 cut(s)	4, 24, 64, 109
Hpy166II	GTNNAC	3 cut(s)	91, 366, 457
Hpy188I	TCNGA	2 cut(s)	529, 556
Hpy188III	TCNNGA	5 cut(s)	104, 212, 344, 479, 518
Hpy8I	GTNNAC	3 cut(s)	91, 366, 457
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	2 cut(s)	365, 541
HpyCH4III	ACNGT	3 cut(s)	193, 265, 698
HpyCH4V	TGCA	1 cut(s)	425
HpyF3I	CTNAG	2 cut(s)	603, 705
Hsp92II	CATG	1 cut(s)	565
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	340, 349, 475, 514
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	160, 168
Lsp1109I	GCAGC	2 cut(s)	433, 436
MaeI	CTAG	2 cut(s)	104, 662
MaeIII	GTNAC	3 cut(s)	52, 193, 212
MalI	GATC	4 cut(s)	342, 351, 477, 516
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	4 cut(s)	340, 349, 475, 514
MboII	GAAGA	5 cut(s)	119, 245, 248, 505, 553
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	165, 298
MluCI	AATT	5 cut(s)	142, 378, 469, 686, 690
MnlI	CCTC	6 cut(s)	136, 139, 290, 516, 589, 639
MseI	TTAA	3 cut(s)	381, 501, 689
MspI	CCGG	2 cut(s)	35, 220
MspR9I	CCNGG	3 cut(s)	158, 167, 408
MvaI	CCWGG	3 cut(s)	158, 167, 408
NdeII	GATC	4 cut(s)	340, 349, 475, 514
NlaIII	CATG	1 cut(s)	565
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	3 cut(s)	52, 193, 212
PceI	AGGCCT	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	5 cut(s)	69, 437, 530, 551, 557
PflFI	GACNNNGTC	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	448, 451
PshBI	ATTAAT	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	3 cut(s)	156, 165, 406
PspGI	CCWGG	3 cut(s)	156, 165, 406
PspPI	GGNCC	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	400
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	381, 501, 689
SatI	GCNGC	2 cut(s)	447, 450
Sau3AI	GATC	4 cut(s)	340, 349, 475, 514
Sau96I	GGNCC	1 cut(s)	138
ScaI	AGTACT	1 cut(s)	203
ScrFI	CCNGG	3 cut(s)	158, 167, 408
SduI	GDGCHC	2 cut(s)	165, 298
SetI	ASST	8 cut(s)	115, 165, 282, 321, 340, 357, 420, 489
SfcI	CTRYAG	1 cut(s)	610
Sse9I	AATT	5 cut(s)	142, 378, 469, 686, 690
SseBI	AGGCCT	1 cut(s)	608
SsiI	CCGC	4 cut(s)	16, 49, 286, 325
SspMI	CTAG	2 cut(s)	104, 662
SstI	GAGCTC	1 cut(s)	165
StuI	AGGCCT	1 cut(s)	608
StyD4I	CCNGG	3 cut(s)	156, 165, 406
TaaI	ACNGT	3 cut(s)	193, 265, 698
TaqI	TCGA	3 cut(s)	435, 480, 519
TasI	AATT	5 cut(s)	142, 378, 469, 686, 690
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	5 cut(s)	69, 437, 530, 551, 557
Tru1I	TTAA	3 cut(s)	381, 501, 689
Tru9I	TTAA	3 cut(s)	381, 501, 689
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	3 cut(s)	52, 193, 212
TseI	GCWGC	2 cut(s)	446, 449
Tsp45I	GTSAC	3 cut(s)	52, 193, 212
TspDTI	ATGAA	3 cut(s)	56, 506, 554
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	1 cut(s)	198
Tth111I	GACNNNGTC	1 cut(s)	400
VspI	ATTAAT	1 cut(s)	689
XbaI	TCTAGA	1 cut(s)	103
XspI	CTAG	2 cut(s)	104, 662
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.