Prupe.4G222400_v2.0.a1

transposition, RNA-mediated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
13962270 .. 13964282
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G222400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 249 bp
ATGGGCAAGAAACATCAGGCGACTACCTTAATAGAGGTCGCTGCCATAGAGGAGGTAGAGCTTGACGTCCAAAAGGAGCTATGGGAAGCCCAGATCCACGAGGTGCAGAATTCAGTGTCCACCATGACCTTTAGACAAGAGGAATTTCATACAAATATGACAGAAGTTTTGAAGACGCTATCGTCTTTGACCACGCAACAGGCTCAACAAGTCGTCTTTCAGCAAAACGATAATAGACGAGCTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.47

Weight (kDa)

5.03

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AatII GACGTC 1 cut(s) 69
AclWI GGATC 1 cut(s) 88
AcsI RAATTY 2 cut(s) 109, 143
AcyI GRCGYC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 3 cut(s) 61, 79, 242
AluI AGCT 3 cut(s) 61, 79, 242
AlwI GGATC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 2 cut(s) 109, 143
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 125
Bsp143I GATC 1 cut(s) 93
BspPI GGATC 1 cut(s) 88
BssMI GATC 1 cut(s) 93
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 246
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstSNI TACGTA 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 120
CseI GACGC 1 cut(s) 184
CviAII CATG 1 cut(s) 124
CviJI RGCY 5 cut(s) 61, 79, 89, 203, 242
CviKI_1 RGCY 5 cut(s) 61, 79, 89, 203, 242
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
DraIII CACNNNGTG 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
Eco105I TACGTA 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 109
FaeI CATG 1 cut(s) 127
FaiI YATR 5 cut(s) 47, 82, 125, 150, 158
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HgaI GACGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 120
Hpy8I GTNNAC 1 cut(s) 120
HpyCH4IV ACGT 2 cut(s) 66, 245
HpyCH4V TGCA 1 cut(s) 106
HpySE526I ACGT 2 cut(s) 66, 245
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 2, 104, 185
Lsp1109I GCAGC 1 cut(s) 28
MaeII ACGT 2 cut(s) 66, 245
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 184
MflI RGATCY 1 cut(s) 93
MluCI AATT 2 cut(s) 109, 143
MnlI CCTC 5 cut(s) 28, 43, 46, 94, 133
MseI TTAA 1 cut(s) 29
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 127
PkrI GCNGC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 246
PsuI RGATCY 1 cut(s) 93
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 93
SnaBI TACGTA 1 cut(s) 246
Sse9I AATT 2 cut(s) 109, 143
TaiI ACGT 2 cut(s) 69, 248
TasI AATT 2 cut(s) 109, 143
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 120
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 120
XapI RAATTY 2 cut(s) 109, 143
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.