Prupe.4G228300_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
14584473 .. 14585216
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G228300.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 330 bp
ATGGCTCAGCAGAAGGTGGTCCTCAAGGTCATGACGATGACTGATGACAAAACAAAGCAGAAAGCCATTGAAGCTGCCGCTGATATATTTGGGATTGATTCAATAGCAGCAGATCTAAAGGACCAGAAGAGAAAAGGATCCAGAGTGGGAGGGCCTACATGTTTCGTCATGAGCCCCTACAACAATAAAATGACACCTCCCTCAGCAGATCAAAACCATTTCTACAACAATAAAATGACACCTCAATCAACTGGTCAACAGAGCTGCGTCGCGGCTCGAGCAAGCAGCCCAAGCCAGTTCGGTAGGCGCACCAATTTGATCATCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

110

Amino Acids

11.97

Weight (kDa)

9.88

Isoelectric Point (pI)

66.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 272
AciI CCGC 3 cut(s) 78, 272, 325
AclWI GGATC 2 cut(s) 132, 145
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 2 cut(s) 71, 102
AluBI AGCT 2 cut(s) 74, 264
AluI AGCT 2 cut(s) 74, 264
AlwI GGATC 2 cut(s) 132, 145
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 4 cut(s) 74, 107, 264, 285
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 3 cut(s) 19, 121, 152
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 2 cut(s) 19, 121
BamHI GGATCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 202
BbvI GCAGC 4 cut(s) 61, 119, 251, 297
BclI TGATCA 1 cut(s) 318
BglII AGATCT 1 cut(s) 112
BisI GCNGC 6 cut(s) 75, 78, 108, 265, 273, 286
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 6 cut(s) 76, 79, 109, 266, 274, 287
Bme18I GGWCC 2 cut(s) 19, 121
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 3 cut(s) 19, 121, 152
BmiI GGNNCC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 202
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 256, 295
BseGI GGATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 20, 216
BseNI ACTGG 2 cut(s) 256, 295
BseXI GCAGC 4 cut(s) 61, 119, 251, 297
Bsh1236I CGCG 1 cut(s) 272
BshFI GGCC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 276
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 4 cut(s) 112, 137, 208, 318
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 3 cut(s) 78, 272, 325
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 19, 215
BspFNI CGCG 1 cut(s) 272
BspHI TCATGA 2 cut(s) 30, 168
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 2 cut(s) 132, 145
BsrI ACTGG 2 cut(s) 256, 295
BssMI GATC 4 cut(s) 112, 137, 208, 318
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 6, 202
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 4 cut(s) 115, 140, 211, 321
BstMBI GATC 4 cut(s) 112, 137, 208, 318
BstMWI GCNNNNNNNGC 3 cut(s) 71, 278, 291
BstNSI RCATGY 1 cut(s) 162
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 4 cut(s) 61, 119, 251, 297
BstX2I RGATCY 2 cut(s) 112, 137
BstYI RGATCY 2 cut(s) 112, 137
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 283
CciI TCATGA 2 cut(s) 30, 168
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 3 cut(s) 19, 121, 152
CseI GACGC 1 cut(s) 256
CviAII CATG 3 cut(s) 31, 159, 169
CviJI RGCY 9 cut(s) 5, 65, 74, 154, 174, 264, 275, 288, 294
CviKI_1 RGCY 9 cut(s) 5, 65, 74, 154, 174, 264, 275, 288, 294
DdeI CTNAG 2 cut(s) 6, 202
DpnI GATC 4 cut(s) 114, 139, 210, 320
DpnII GATC 4 cut(s) 112, 137, 208, 318
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 19, 121
Eco88I CYCGRG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 176
FaeI CATG 3 cut(s) 34, 162, 172
FaiI YATR 4 cut(s) 32, 86, 160, 170
FatI CATG 3 cut(s) 30, 158, 168
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 6 cut(s) 75, 78, 108, 265, 273, 286
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 6 cut(s) 75, 78, 108, 265, 273, 286
GlaI GCGC 1 cut(s) 308
GluI GCNGC 6 cut(s) 75, 78, 108, 265, 273, 286
HaeIII GGCC 1 cut(s) 154
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 309
Hin1II CATG 3 cut(s) 34, 162, 172
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 257
HindII GTYRAC 1 cut(s) 257
HinfI GANTC 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 257
Hpy188III TCNNGA 3 cut(s) 31, 141, 169
Hpy8I GTNNAC 1 cut(s) 257
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 278, 291
HpyF3I CTNAG 2 cut(s) 6, 202
Hsp92II CATG 3 cut(s) 34, 162, 172
HspAI GCGC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 4 cut(s) 112, 137, 208, 318
LpnPI CCDG 4 cut(s) 137, 154, 237, 308
Lsp1109I GCAGC 4 cut(s) 61, 119, 251, 297
MalI GATC 4 cut(s) 114, 139, 210, 320
MboI GATC 4 cut(s) 112, 137, 208, 318
MboII GAAGA 1 cut(s) 139
MflI RGATCY 2 cut(s) 112, 137
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 1 cut(s) 313
MnlI CCTC 5 cut(s) 32, 143, 207, 211, 252
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 2 cut(s) 80, 327
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 71, 278, 291
NdeII GATC 4 cut(s) 112, 137, 208, 318
NlaIII CATG 3 cut(s) 34, 162, 172
NlaIV GGNNCC 1 cut(s) 139
NspI RCATGY 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 276
PagI TCATGA 2 cut(s) 30, 168
PciI ACATGT 1 cut(s) 158
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 6 cut(s) 76, 79, 109, 266, 274, 287
PscI ACATGT 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 3 cut(s) 19, 121, 152
PspXI VCTCGAGB 1 cut(s) 276
PsuI RGATCY 2 cut(s) 112, 137
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 6 cut(s) 75, 78, 108, 265, 273, 286
Sau3AI GATC 4 cut(s) 112, 137, 208, 318
Sau96I GGNCC 3 cut(s) 19, 121, 152
SduI GDGCHC 1 cut(s) 176
SetI ASST 6 cut(s) 18, 30, 76, 199, 244, 266
Sfr274I CTCGAG 1 cut(s) 276
SinI GGWCC 2 cut(s) 19, 121
SlaI CTCGAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 23, 276
SmoI CTYRAG 2 cut(s) 23, 276
Sse9I AATT 1 cut(s) 313
SsiI CCGC 3 cut(s) 78, 272, 325
TaqI TCGA 1 cut(s) 277
TasI AATT 1 cut(s) 313
TauI GCSGC 2 cut(s) 80, 275
TfiI GAWTC 1 cut(s) 98
TseI GCWGC 4 cut(s) 74, 107, 264, 285
VpaK11BI GGWCC 2 cut(s) 19, 121
XceI RCATGY 1 cut(s) 162
XhoI CTCGAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.