Prupe.4G230300_v2.0.a1

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
14750292 .. 14751885
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G230300.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 426 bp
ATGCGAAAACCGAAAAGAGAAAACAAAACATCACAAGAGAAAATTCACAAGTTTTTCTCTGCTAGGAAGCATTGGTTGGTAGATGCTGCAGTTAGAAGCCGCAGTTCTGATAGGACCGCTGTTGTTACTCTACCTGGTGGGATATTGCTAGAAAGGATCGGATCGGAGCTTCCAGTTCCTTTCTTGTTGATGAACTATGACTCATTCTATTCAAAGCTTCTAGGCTTCCTTGATGATTGTAAGGACTGCGGCATCCTCTCCAACGGAGAGATTACATCTCTGTGGAAGGTTTGTGATGGTAACTCAGAGGCTTTGGTTTATTTGGCAGGGTTAGAGAAAGATTCAAGTATGCATGCTAAACATGAGGGATATGCCATAAACCCATGCTTGGTTTTTGTGATTTTCATGAAGAAAACAAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

15.9

Weight (kDa)

9.06

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 100, 117, 249
AclWI GGATC 2 cut(s) 164, 169
AcsI RAATTY 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 2 cut(s) 213, 345
AjnI CCWGG 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 2 cut(s) 169, 217
AluI AGCT 2 cut(s) 169, 217
AlwI GGATC 2 cut(s) 164, 169
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 114
AvaII GGWCC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 135
BfaI CTAG 3 cut(s) 63, 149, 221
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 3 cut(s) 87, 100, 250
BlsI GCNGC 3 cut(s) 88, 101, 251
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 73, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 388
Bsp143I GATC 2 cut(s) 156, 161
BspACI CCGC 3 cut(s) 100, 117, 249
BspCNI CTCAG 1 cut(s) 317
BspHI TCATGA 1 cut(s) 405
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 2 cut(s) 164, 169
BsrI ACTGG 1 cut(s) 173
BssMI GATC 2 cut(s) 156, 161
Bst2UI CCWGG 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 304
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 2 cut(s) 159, 164
BstMBI GATC 2 cut(s) 156, 161
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 114
CsiI ACCWGGT 1 cut(s) 133
CviAII CATG 4 cut(s) 353, 362, 384, 406
CviJI RGCY 5 cut(s) 99, 169, 217, 225, 311
CviKI_1 RGCY 5 cut(s) 99, 169, 217, 225, 311
DdeI CTNAG 1 cut(s) 304
DpnI GATC 2 cut(s) 158, 163
DpnII GATC 2 cut(s) 156, 161
Eco47I GGWCC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 354
FaeI CATG 4 cut(s) 356, 365, 387, 409
FaiI YATR 8 cut(s) 198, 350, 354, 363, 372, 377, 385, 407
FatI CATG 4 cut(s) 352, 361, 383, 405
Fnu4HI GCNGC 3 cut(s) 87, 100, 250
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 3 cut(s) 87, 100, 250
FspBI CTAG 3 cut(s) 63, 149, 221
GluI GCNGC 3 cut(s) 87, 100, 250
Hin1II CATG 4 cut(s) 356, 365, 387, 409
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 2 cut(s) 200, 341
Hpy188I TCNGA 4 cut(s) 109, 161, 166, 307
Hpy188III TCNNGA 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 89, 352
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 4 cut(s) 356, 365, 387, 409
Kzo9I GATC 2 cut(s) 156, 161
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 4 cut(s) 120, 147, 186, 312
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 2 cut(s) 73, 261
MabI ACCWGGT 1 cut(s) 133
MaeI CTAG 3 cut(s) 63, 149, 221
MaeIII GTNAC 2 cut(s) 124, 299
MalI GATC 2 cut(s) 158, 163
MboI GATC 2 cut(s) 156, 161
MboII GAAGA 1 cut(s) 421
MluCI AATT 1 cut(s) 42
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 3 cut(s) 266, 301, 358
Mph1103I ATGCAT 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
NdeII GATC 2 cut(s) 156, 161
NlaIII CATG 4 cut(s) 356, 365, 387, 409
NsiI ATGCAT 1 cut(s) 354
NspI RCATGY 1 cut(s) 356
PaeI GCATGC 1 cut(s) 356
PagI TCATGA 1 cut(s) 405
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 3 cut(s) 88, 101, 251
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspPI GGNCC 1 cut(s) 114
PstI CTGCAG 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 280
SatI GCNGC 3 cut(s) 87, 100, 250
Sau3AI GATC 2 cut(s) 156, 161
Sau96I GGNCC 1 cut(s) 114
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 135
SetI ASST 4 cut(s) 136, 171, 219, 291
SexAI ACCWGGT 1 cut(s) 133
SfaNI GCATC 2 cut(s) 73, 261
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 280
SphI GCATGC 1 cut(s) 356
Sse9I AATT 1 cut(s) 42
SsiI CCGC 3 cut(s) 100, 117, 249
SspMI CTAG 3 cut(s) 63, 149, 221
StyD4I CCNGG 1 cut(s) 133
TasI AATT 1 cut(s) 42
TauI GCSGC 2 cut(s) 102, 252
TfiI GAWTC 1 cut(s) 341
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 206, 394, 422
TspGWI ACGGA 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 1 cut(s) 42
XceI RCATGY 1 cut(s) 356
XspI CTAG 3 cut(s) 63, 149, 221
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.