Prupe.4G233700_v2.0.a1

Ubiquitin thioesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Reverse (-)
15078911 .. 15082808
3898 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G233700.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 441 bp
ATGGAAGGTATTGTAGTAAGAAGGGCTATTCCCTCAGACAATAGTTGCCTCTTCAATGCGGTTGGGTATGCTATCGACCATGACAAGAAAAAAGCTCCTGAGTTGAGACAGGTTATAGCAGCAACAGTAGCAAGTGATCCAACTAAGTATTCTGAAGCATTTCTCGGTAAACCAAATGAAGAGTATTGTTCTTGGATTCTTGACTCTGAGAAGTGGGGAGAATGTTTATGCCCATTTTCGTATGGGGTACTTTTGACAAGAGCTCTGCTGATCTATGATGGGCTTCATTACGATGCTTTAGCTTTAATGGTCATTGGTTTCTGCATCATATTGTCTCAGATGTCACCCTTTGAGGAGCTCCAGAGGAGTTTGATCAGACTATATTTGCAGTTAAGGACAGTGCCATTGGGCCGGTTGAGGGGCTCGCTCTTAATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
OTU

Protein Analysis

147

Amino Acids

16.43

Weight (kDa)

6.1

Isoelectric Point (pI)

64.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 418
AgsI TTSAA 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 4 cut(s) 95, 263, 302, 358
AluI AGCT 4 cut(s) 95, 263, 302, 358
Alw21I GWGCWC 2 cut(s) 265, 360
Alw26I GTCTC 2 cut(s) 100, 339
AlwI GGATC 1 cut(s) 131
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 336
BanII GRGCYC 3 cut(s) 265, 360, 425
Bbv12I GWGCWC 2 cut(s) 265, 360
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 272
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 100, 339
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 409
BmsI GCATC 2 cut(s) 283, 333
BpmI CTGGAG 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse118I RCCGGY 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMII CTCAG 4 cut(s) 48, 90, 198, 350
BseRI GAGGAG 2 cut(s) 368, 379
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 265, 360
BsiSI CCGG 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 2 cut(s) 100, 339
BsnI GGCC 1 cut(s) 411
Bsp1286I GDGCHC 3 cut(s) 265, 360, 425
Bsp143I GATC 3 cut(s) 136, 270, 372
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 4 cut(s) 47, 91, 199, 349
BspPI GGATC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 411
BssMI GATC 3 cut(s) 136, 270, 372
Bst4CI ACNGT 2 cut(s) 127, 400
Bst6I CTCTTC 2 cut(s) 56, 174
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 5 cut(s) 34, 99, 144, 207, 336
BstKTI GATC 3 cut(s) 139, 273, 375
BstMAI GTCTC 2 cut(s) 100, 339
BstMBI GATC 3 cut(s) 136, 270, 372
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 425
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 409
Csp6I GTAC 1 cut(s) 248
CviAII CATG 1 cut(s) 80
CviJI RGCY 8 cut(s) 26, 95, 263, 283, 302, 358, 411, 423
CviKI_1 RGCY 8 cut(s) 26, 95, 263, 283, 302, 358, 411, 423
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 5 cut(s) 34, 99, 144, 207, 336
DpnI GATC 3 cut(s) 138, 272, 374
DpnII GATC 3 cut(s) 136, 270, 372
Eam1104I CTCTTC 2 cut(s) 56, 174
EarI CTCTTC 2 cut(s) 56, 174
Ecl136II GAGCTC 2 cut(s) 263, 358
Eco24I GRGCYC 3 cut(s) 265, 360, 425
Eco53kI GAGCTC 2 cut(s) 263, 358
Eco57I CTGAAG 1 cut(s) 174
EcoICRI GAGCTC 2 cut(s) 263, 358
EcoT38I GRGCYC 3 cut(s) 265, 360, 425
FaeI CATG 1 cut(s) 83
FaiI YATR 8 cut(s) 69, 81, 116, 229, 243, 276, 329, 382
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 120
FriOI GRGCYC 3 cut(s) 265, 360, 425
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 411
HapII CCGG 1 cut(s) 412
Hin1II CATG 1 cut(s) 83
HinfI GANTC 2 cut(s) 196, 203
HpaII CCGG 1 cut(s) 412
HphI GGTGA 1 cut(s) 336
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 5 cut(s) 37, 154, 208, 339, 377
Hpy188III TCNNGA 3 cut(s) 98, 200, 361
Hpy8I GTNNAC 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 127, 400
HpyCH4V TGCA 2 cut(s) 324, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 5 cut(s) 34, 99, 144, 207, 336
Hsp92II CATG 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 3 cut(s) 136, 270, 372
LmnI GCTCC 3 cut(s) 100, 355, 363
LpnPI CCDG 4 cut(s) 95, 111, 374, 425
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 2 cut(s) 283, 333
MaeIII GTNAC 1 cut(s) 342
MalI GATC 3 cut(s) 138, 272, 374
MboI GATC 3 cut(s) 136, 270, 372
MboII GAAGA 2 cut(s) 43, 191
MhlI GDGCHC 3 cut(s) 265, 360, 425
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 5 cut(s) 43, 59, 346, 357, 411
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 3 cut(s) 305, 392, 431
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 3 cut(s) 136, 270, 372
NlaIII CATG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Psp124BI GAGCTC 2 cut(s) 265, 360
PspPI GGNCC 1 cut(s) 409
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 291
SacI GAGCTC 2 cut(s) 265, 360
SaqAI TTAA 3 cut(s) 305, 392, 431
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 3 cut(s) 136, 270, 372
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 3 cut(s) 265, 360, 425
SetI ASST 6 cut(s) 10, 97, 114, 265, 304, 360
SfaNI GCATC 2 cut(s) 283, 333
SmiMI CAYNNNNRTG 1 cut(s) 291
SsiI CCGC 1 cut(s) 59
SstI GAGCTC 2 cut(s) 265, 360
TaaI ACNGT 2 cut(s) 127, 400
TaqI TCGA 1 cut(s) 75
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 305, 392, 431
Tru9I TTAA 3 cut(s) 305, 392, 431
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 192, 275
TspRI CASTG 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.