Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

15118949 .. 15119512

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G234300.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGAATAGAATCTATCGATTTCATGGTTCTGTAAGAATTATACAAATATCAGAACTTAGATTCAATCTCCCACCCGGTCCGCGTCCATGGCCGATCGTCGGAAACCTCTACGACATAAAGCTATCTTCATCGTCTTCTCTGCAAGTTCCTGTACAGCTTCGATGTGTTCGCATCGGAAGAAGTGGAGTCTCTGCTCCCTCCCGGCCTCGGATTCTTCCTGTGGTTGCAGCAAAGAAGCAAACATTTTCCTCCTTTGAGGATTTGCTGGCTACTACTGACAAACCTGTTTTGGTTGACTTCTATGCAACCTGGTGTGGTCCTTGTCAATTTATGGCTCCTATCCTCAATGAAGTGAGTATTACTCTGAATGACAAGATCCAGGTGGTGAAAATTGACACTGAGAAGTATCTAGGTGCTATCTTTGATATTACAGCAACAAATGGTCTTGATACGGGCAGGAAACTATGTATCTTCGGGTTTTGCCGTTCCATTGAGATGCTAAAGCACAAGTTGTGGGTTGGCCACCAGTGCGATCATACCTGGAGCTACTGGAAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

188

Amino Acids

21.18

Weight (kDa)

9.53

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	85
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	2 cut(s)	92, 523
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	101, 210
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	3 cut(s)	311, 381, 542
AluBI	AGCT	3 cut(s)	124, 160, 549
AluI	AGCT	3 cut(s)	124, 160, 549
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	3 cut(s)	92, 206, 523
ApeKI	GCWGC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	80, 320
AsuC2I	CCSGG	2 cut(s)	78, 205
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	2 cut(s)	80, 320
BalI	TGGCCA	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	3 cut(s)	313, 383, 544
BcnI	CCSGG	2 cut(s)	78, 205
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	413
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	5 cut(s)	78, 205, 313, 383, 544
Bme18I	GGWCC	2 cut(s)	80, 320
BmgT120I	GGNCC	2 cut(s)	80, 320
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	5 cut(s)	78, 205, 313, 383, 544
BmsI	GCATC	2 cut(s)	183, 489
BpiI	GAAGAC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpuMI	CCSGG	2 cut(s)	78, 205
Bsa29I	ATCGAT	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	89, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 210
Bse1I	ACTGG	2 cut(s)	529, 557
BseBI	CCWGG	3 cut(s)	313, 383, 544
BseCI	ATCGAT	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	89, 209
BseLI	CCNNNNNNNGG	2 cut(s)	101, 210
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	529, 557
BseXI	GCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	94, 208, 525
BshVI	ATCGAT	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	78, 205
BslI	CCNNNNNNNGG	2 cut(s)	101, 210
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	3 cut(s)	94, 208, 525
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	96, 378, 535
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	3 cut(s)	94, 208, 525
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	373
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	529, 557
BssECI	CCNNGG	2 cut(s)	89, 209
BssMI	GATC	3 cut(s)	96, 378, 535
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	3 cut(s)	313, 383, 544
BstAUI	TGTACA	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	59, 402
BstDSI	CCRYGG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	3 cut(s)	99, 381, 538
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	96, 378, 535
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 531
BstNI	CCWGG	3 cut(s)	313, 383, 544
BstSCI	CCNGG	5 cut(s)	76, 203, 311, 381, 542
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	94, 208, 525
BsuTUI	ATCGAT	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	399, 536
Cac8I	GCNNGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	80, 320
ClaI	ATCGAT	1 cut(s)	19
CpoI	CGGWCCG	1 cut(s)	80
CseI	GACGC	1 cut(s)	74
CsiI	ACCWGGT	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	155
CspI	CGGWCCG	1 cut(s)	80
CviAII	CATG	2 cut(s)	26, 90
CviJI	RGCY	8 cut(s)	94, 124, 160, 208, 272, 338, 525, 549
CviKI_1	RGCY	8 cut(s)	94, 124, 160, 208, 272, 338, 525, 549
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	2 cut(s)	59, 402
DpnI	GATC	3 cut(s)	98, 380, 537
DpnII	GATC	3 cut(s)	96, 378, 535
EaeI	YGGCCR	2 cut(s)	92, 523
Eco130I	CCWWGG	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	80, 320
EcoRII	CCWGG	3 cut(s)	311, 381, 542
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	2 cut(s)	29, 93
FaiI	YATR	8 cut(s)	27, 44, 91, 119, 306, 335, 469, 540
FatI	CATG	2 cut(s)	25, 89
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	94, 208, 525
HapII	CCGG	2 cut(s)	78, 205
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	29, 93
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	4 cut(s)	12, 63, 189, 214
HpaII	CCGG	2 cut(s)	78, 205
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	5 cut(s)	55, 104, 179, 213, 369
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	145, 230, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 531
HpyF3I	CTNAG	2 cut(s)	59, 402
Hsp92II	CATG	2 cut(s)	29, 93
Kzo9I	GATC	3 cut(s)	96, 378, 535
LmnI	GCTCC	3 cut(s)	202, 343, 546
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	2 cut(s)	183, 489
MabI	ACCWGGT	1 cut(s)	311
MaeI	CTAG	1 cut(s)	413
MalI	GATC	3 cut(s)	98, 380, 537
MboI	GATC	3 cut(s)	96, 378, 535
MboII	GAAGA	6 cut(s)	16, 120, 129, 192, 209, 466
MflI	RGATCY	1 cut(s)	378
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	3 cut(s)	39, 329, 393
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	6 cut(s)	119, 211, 219, 253, 262, 356
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	525
MspI	CCGG	2 cut(s)	78, 205
MspR9I	CCNGG	5 cut(s)	78, 205, 313, 383, 544
MvaI	CCWGG	3 cut(s)	313, 383, 544
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	91, 531
NciI	CCSGG	2 cut(s)	78, 205
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	3 cut(s)	96, 378, 535
NlaIII	CATG	2 cut(s)	29, 93
NlaIV	GGNNCC	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	12, 63, 214
PkrI	GCNGC	1 cut(s)	232
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp6I	CCWGG	3 cut(s)	311, 381, 542
PspGI	CCWGG	3 cut(s)	311, 381, 542
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	2 cut(s)	80, 320
PsuI	RGATCY	1 cut(s)	378
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	497
Rsr2I	CGGWCCG	1 cut(s)	80
RsrII	CGGWCCG	1 cut(s)	80
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	96, 378, 535
Sau96I	GGNCC	2 cut(s)	80, 320
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	5 cut(s)	78, 205, 313, 383, 544
SexAI	ACCWGGT	1 cut(s)	311
SfaNI	GCATC	2 cut(s)	183, 489
SinI	GGWCC	2 cut(s)	80, 320
SmiMI	CAYNNNNRTG	1 cut(s)	497
Sse9I	AATT	3 cut(s)	39, 329, 393
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	5 cut(s)	76, 203, 311, 381, 542
StyI	CCWWGG	1 cut(s)	89
TaqI	TCGA	2 cut(s)	19, 163
TasI	AATT	3 cut(s)	39, 329, 393
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	3 cut(s)	12, 63, 214
TscAI	CASTG	2 cut(s)	406, 536
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	4 cut(s)	14, 17, 120, 366
TspRI	CASTG	2 cut(s)	406, 536
VpaK11BI	GGWCC	2 cut(s)	80, 320
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.