Prupe.4G240500_v2.0.a1

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
N/A
Physical Location & Seq
Forward (+)
15823023 .. 15824869
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G240500.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 1323 bp
ATGCCTAGCTCAGCAGGAGCAGCAATTTCATGGGCTTACAAATTAGGCTTCCCTAAAGCAAATGACGACTTTGAGCCCTCCATCTTGAAGTTTAGAATGTCATCTTTCCAACCACATATCACTTGGGCCAATCCAGGGTCGGAGGAAGATTTTAAGGCCCAAACAAATTGGAGGTTGGTGGTTAATACATGGGTAACTTATAATGCTGCCACCAACAACCTCAATGTGTATTGCACAAATGATCAAAATCGGAACCCTTTTATTATCAAGGGTTTTTCTCTTGATCACCATATTGACTTGCGAAAGGTTCTCCCAGAATGGGTTACAATTGGTTTCTCAGTTGCTACTAGATTATACACGGAGCGGCATGTTATACATTCAAAGGAATTCATGACAAACTTAGATTATAATGGGAGAAGAAACAAAAGCAAGGAAAACAGCAGAAAGAAGAAATTCTTGATTGATGTGGCCACATATTGGTTGCTACCTGTGGTGTTAAGGAAGTACAAAAATAGTTATAACTTCCATGTTATTCTATCTATAAACACAGATCTTGAGAGACTAGCCTTGCCAAAACGATTCGCTTACAAAGACTTAGTTGCAGCCACCTATGGCTTTGCAAACGACATAAGGTTAGGCCAAAGGGGGTCAGGAAAAGTTTATAAAGGACTCATACAAGATCTAGGCTGCACCATTGCTGTCAAGAGAATTTTTGTGTACCGCATAATAAATAGGAACCTTGTGCAGTTCATTCGATGGTGTCATGAGGAGGGCGAATGCTTACTTGCTTATGCATACATGCCTAACAGCAGCCTTGACACATATCTATTTGGCCCTAGAGCAACCCTGCAATGGGATTTTAGGTATGTGGAGCAGTGTGTGGTTCACAGGGATATCAAATCAGCTAACATATTATTAGACAACGATTTTAGCACTAAGCTTGGTGATTTTGGGATTGCTAAGCTGGTGGATCTGCAGTTCTGGACTCAGACAACAGGGGTGGTAGGGACTTTCGGATACATGGCACATAATATGCAAATGGGGGGAGGGCTACTGTACCTTGCAAGAAATATTCTTAATGTAGCTGATGAGAGAATGGGTGAGAATTTTGATAAAAAAGAAATGAAGTGTTTGTTAATTGTTGGATTATGGTGCATTCACCCTAACAGCAAAGAAAGACCAAAAGCAGGCCAAATGATGAAGGTTCTTCAGCTTGAAGCACCATTGCCAGTACTTCCATATGACATGCACGGATATGATCATCTCATGCCTCAAGACAATAATTTAAGTCCTTCAGCCGACGTACCATTGCCTAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

441

Amino Acids

50.58

Weight (kDa)

9.1

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 201, 408, 519, 663
AccB7I CCANNNNNTGG 1 cut(s) 477
AccBSI CCGCTC 1 cut(s) 364
AciI CCGC 2 cut(s) 364, 721
AclWI GGATC 1 cut(s) 978
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 4 cut(s) 386, 452, 708, 1105
AcuI CTGAAG 2 cut(s) 1193, 1278
AfaI GTAC 5 cut(s) 506, 719, 1058, 1233, 1305
AfiI CCNNNNNNNGG 6 cut(s) 135, 319, 477, 852, 853, 1187
AgsI TTSAA 3 cut(s) 88, 381, 1217
AjnI CCWGG 1 cut(s) 133
AloI GAACNNNNNNTCC 2 cut(s) 962, 994
AluBI AGCT 6 cut(s) 9, 905, 940, 964, 1085, 1213
AluI AGCT 6 cut(s) 9, 905, 940, 964, 1085, 1213
Alw26I GTCTC 1 cut(s) 553
AlwI GGATC 1 cut(s) 978
AoxI GGCC 6 cut(s) 126, 156, 468, 637, 832, 1189
ApeKI GCWGC 5 cut(s) 20, 206, 602, 687, 810
ApoI RAATTY 4 cut(s) 386, 452, 708, 1105
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 3 cut(s) 126, 157, 833
AsuHPI GGTGA 4 cut(s) 278, 956, 1112, 1151
BalI TGGCCA 1 cut(s) 470
BanII GRGCYC 1 cut(s) 78
BbvI GCAGC 5 cut(s) 32, 193, 614, 674, 822
BccI CCATC 2 cut(s) 89, 750
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 1 cut(s) 135
BciVI GTATCC 1 cut(s) 1010
BclI TGATCA 3 cut(s) 241, 283, 1258
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 5 cut(s) 6, 348, 563, 683, 837
BfmI CTRYAG 1 cut(s) 974
BfuI GTATCC 1 cut(s) 1010
BglII AGATCT 2 cut(s) 550, 679
BisI GCNGC 6 cut(s) 21, 207, 365, 603, 688, 811
BlpI GCTNAGC 2 cut(s) 10, 960
BlsI GCNGC 6 cut(s) 22, 208, 366, 604, 689, 812
BmcAI AGTACT 1 cut(s) 1233
Bme1390I CCNGG 1 cut(s) 135
BmgT120I GGNCC 3 cut(s) 126, 157, 833
BmiI GGNNCC 2 cut(s) 254, 737
BmrFI CCNGG 1 cut(s) 135
Bpu1102I GCTNAGC 2 cut(s) 10, 960
BpuEI CTTGAG 2 cut(s) 575, 1257
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 6 cut(s) 135, 319, 477, 852, 853, 1187
Bse1I ACTGG 1 cut(s) 1229
Bse3DI GCAATG 4 cut(s) 693, 857, 1223, 1307
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 134
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 6 cut(s) 135, 319, 477, 852, 853, 1187
BseMI GCAATG 4 cut(s) 693, 857, 1223, 1307
BseMII CTCAG 3 cut(s) 24, 351, 1001
BseNI ACTGG 1 cut(s) 1229
BseRI GAGGAG 1 cut(s) 782
BseXI GCAGC 5 cut(s) 32, 193, 614, 674, 822
BsgI GTGCAG 2 cut(s) 673, 764
BshFI GGCC 6 cut(s) 128, 158, 470, 639, 834, 1191
BslFI GGGAC 1 cut(s) 1021
BslI CCNNNNNNNGG 6 cut(s) 135, 319, 477, 852, 853, 1187
BsmAI GTCTC 1 cut(s) 553
BsmFI GGGAC 1 cut(s) 1021
BsmI GAATGC 2 cut(s) 782, 1155
BsnI GGCC 6 cut(s) 128, 158, 470, 639, 834, 1191
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 6 cut(s) 241, 283, 550, 679, 970, 1258
Bsp1720I GCTNAGC 2 cut(s) 10, 960
BspACI CCGC 2 cut(s) 364, 721
BspANI GGCC 6 cut(s) 128, 158, 470, 639, 834, 1191
BspCNI CTCAG 3 cut(s) 23, 350, 1000
BspHI TCATGA 2 cut(s) 390, 763
BspLI GGNNCC 2 cut(s) 254, 737
BspMAI CTGCAG 1 cut(s) 978
BspPI GGATC 1 cut(s) 978
BsrBI CCGCTC 1 cut(s) 364
BsrDI GCAATG 4 cut(s) 693, 857, 1223, 1307
BsrI ACTGG 1 cut(s) 1229
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 6 cut(s) 241, 283, 550, 679, 970, 1258
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 1056
BstC8I GCNNGC 1 cut(s) 1189
BstDEI CTNAG 7 cut(s) 10, 337, 400, 595, 936, 960, 987
BstKTI GATC 6 cut(s) 244, 286, 553, 682, 973, 1261
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 6 cut(s) 241, 283, 550, 679, 970, 1258
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 3 cut(s) 371, 802, 1249
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 974
BstV1I GCAGC 5 cut(s) 32, 193, 614, 674, 822
BstX2I RGATCY 3 cut(s) 550, 679, 970
BstYI RGATCY 3 cut(s) 550, 679, 970
BsuI GTATCC 1 cut(s) 1010
BsuRI GGCC 6 cut(s) 128, 158, 470, 639, 834, 1191
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 1 cut(s) 881
Cac8I GCNNGC 1 cut(s) 1189
CciI TCATGA 2 cut(s) 390, 763
Cfr13I GGNCC 3 cut(s) 126, 157, 833
Csp6I GTAC 5 cut(s) 505, 718, 1057, 1232, 1304
CspCI CAANNNNNGTGG 2 cut(s) 981, 1016
CviQI GTAC 5 cut(s) 505, 718, 1057, 1232, 1304
DdeI CTNAG 7 cut(s) 10, 337, 400, 595, 936, 960, 987
DpnI GATC 6 cut(s) 243, 285, 552, 681, 972, 1260
DpnII GATC 6 cut(s) 241, 283, 550, 679, 970, 1258
EaeI YGGCCR 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 895
Eco57I CTGAAG 2 cut(s) 1193, 1278
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 133
EcoRV GATATC 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 1 cut(s) 78
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 1021
FauNDI CATATG 1 cut(s) 1240
FbaI TGATCA 3 cut(s) 241, 283, 1258
Fnu4HI GCNGC 6 cut(s) 21, 207, 365, 603, 688, 811
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 6 cut(s) 21, 207, 365, 603, 688, 811
FspBI CTAG 5 cut(s) 6, 348, 563, 683, 837
GluI GCNGC 6 cut(s) 21, 207, 365, 603, 688, 811
HaeIII GGCC 6 cut(s) 128, 158, 470, 639, 834, 1191
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 3 cut(s) 579, 669, 985
HphI GGTGA 4 cut(s) 278, 956, 1112, 1151
Hpy166II GTNNAC 2 cut(s) 718, 886
Hpy188I TCNGA 4 cut(s) 142, 252, 990, 1016
Hpy8I GTNNAC 2 cut(s) 718, 886
Hpy99I CGWCG 1 cut(s) 1304
HpyAV CCTTC 2 cut(s) 1195, 1302
HpyCH4III ACNGT 1 cut(s) 1056
HpyCH4IV ACGT 1 cut(s) 1302
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 7 cut(s) 10, 337, 400, 595, 936, 960, 987
HpySE526I ACGT 1 cut(s) 1302
Ksp22I TGATCA 3 cut(s) 241, 283, 1258
Kzo9I GATC 6 cut(s) 241, 283, 550, 679, 970, 1258
LmnI GCTCC 3 cut(s) 17, 361, 871
Lsp1109I GCAGC 5 cut(s) 32, 193, 614, 674, 822
MaeI CTAG 5 cut(s) 6, 348, 563, 683, 837
MaeII ACGT 1 cut(s) 1302
MaeIII GTNAC 2 cut(s) 193, 322
MalI GATC 6 cut(s) 243, 285, 552, 681, 972, 1260
MbiI CCGCTC 1 cut(s) 364
MboI GATC 6 cut(s) 241, 283, 550, 679, 970, 1258
MboII GAAGA 4 cut(s) 158, 429, 460, 1199
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 3 cut(s) 550, 679, 970
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 470
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 2 cut(s) 663, 979
MmeI TCCRAC 3 cut(s) 120, 133, 1123
MnlI CCTC 8 cut(s) 88, 136, 165, 230, 760, 763, 1040, 1281
Mox20I TGGCCA 1 cut(s) 470
Mph1103I ATGCAT 1 cut(s) 796
MroXI GAANNNNTTC 1 cut(s) 452
MscI TGGCCA 1 cut(s) 470
MseI TTAA 6 cut(s) 153, 183, 497, 1077, 1136, 1286
MslI CAYNNNNRTG 1 cut(s) 1254
Msp20I TGGCCA 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 2 cut(s) 782, 1155
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeI CATATG 1 cut(s) 1240
NdeII GATC 6 cut(s) 241, 283, 550, 679, 970, 1258
NlaIV GGNNCC 2 cut(s) 254, 737
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 3 cut(s) 371, 802, 1249
PagI TCATGA 2 cut(s) 390, 763
PctI GAATGC 2 cut(s) 782, 1155
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 579
PflMI CCANNNNNTGG 1 cut(s) 477
PkrI GCNGC 6 cut(s) 22, 208, 366, 604, 689, 812
PleI GAGTC 2 cut(s) 663, 979
PpsI GAGTC 2 cut(s) 663, 979
PsiI TTATAA 4 cut(s) 201, 408, 519, 663
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 254, 737
PspPI GGNCC 3 cut(s) 126, 157, 833
PstI CTGCAG 1 cut(s) 978
PsuI RGATCY 3 cut(s) 550, 679, 970
RsaI GTAC 5 cut(s) 506, 719, 1058, 1233, 1305
RsaNI GTAC 5 cut(s) 505, 718, 1057, 1232, 1304
RseI CAYNNNNRTG 1 cut(s) 1254
SaqAI TTAA 6 cut(s) 153, 183, 497, 1077, 1136, 1286
SatI GCNGC 6 cut(s) 21, 207, 365, 603, 688, 811
Sau3AI GATC 6 cut(s) 241, 283, 550, 679, 970, 1258
Sau96I GGNCC 3 cut(s) 126, 157, 833
ScaI AGTACT 1 cut(s) 1233
SchI GAGTC 2 cut(s) 663, 979
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 974
SmiMI CAYNNNNRTG 1 cut(s) 1254
SmlI CTYRAG 2 cut(s) 554, 1272
SmoI CTYRAG 2 cut(s) 554, 1272
SsiI CCGC 2 cut(s) 364, 721
SspI AATATT 1 cut(s) 1072
SspMI CTAG 5 cut(s) 6, 348, 563, 683, 837
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 1056
TaiI ACGT 1 cut(s) 1305
TaqI TCGA 1 cut(s) 754
TatI WGTACW 2 cut(s) 504, 1231
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 1 cut(s) 579
Tru1I TTAA 6 cut(s) 153, 183, 497, 1077, 1136, 1286
Tru9I TTAA 6 cut(s) 153, 183, 497, 1077, 1136, 1286
TscAI CASTG 1 cut(s) 881
TseI GCWGC 5 cut(s) 20, 206, 602, 687, 810
TspDTI ATGAA 5 cut(s) 18, 379, 739, 1139, 1214
TspGWI ACGGA 2 cut(s) 374, 1266
TspRI CASTG 1 cut(s) 881
Van91I CCANNNNNTGG 1 cut(s) 477
XapI RAATTY 4 cut(s) 386, 452, 708, 1105
XceI RCATGY 3 cut(s) 371, 802, 1249
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 5 cut(s) 6, 348, 563, 683, 837
ZrmI AGTACT 1 cut(s) 1233
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.